Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15945 and EX31_RS15950 are separated by 51 nucleotides EX31_RS15950 and EX31_RS15955 are separated by 3 nucleotides EX31_RS15955 and EX31_RS15960 overlap by 8 nucleotides
EX31_RS15945: EX31_RS15945 - gamma carbonic anhydrase family protein, at 509 to 1,051
_RS15945
EX31_RS15950: EX31_RS15950 - shikimate dehydrogenase, at 1,103 to 1,930
_RS15950
EX31_RS15955: EX31_RS15955 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 1,934 to 2,503
_RS15955
EX31_RS15960: EX31_RS15960 - hypothetical protein, at 2,496 to 3,056
_RS15960
Position (kb) 1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.320 kb on + strand at 0.320 kb on + strand at 0.322 kb on + strand at 0.450 kb on + strand at 0.450 kb on + strand at 0.450 kb on + strand at 0.451 kb on - strand at 0.451 kb on - strand at 0.451 kb on - strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.470 kb on - strand at 0.470 kb on - strand at 0.470 kb on - strand at 0.470 kb on - strand at 0.470 kb on - strand at 0.470 kb on - strand at 0.470 kb on - strand at 0.471 kb on + strand at 0.472 kb on - strand at 0.472 kb on - strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.484 kb on - strand at 0.484 kb on - strand at 0.484 kb on - strand at 0.486 kb on + strand at 0.486 kb on + strand at 0.486 kb on + strand at 0.494 kb on + strand at 0.494 kb on + strand at 0.501 kb on + strand at 0.522 kb on + strand at 0.523 kb on - strand at 0.530 kb on + strand at 0.531 kb on - strand at 0.540 kb on + strand at 0.540 kb on + strand at 0.540 kb on + strand at 0.541 kb on - strand at 0.541 kb on - strand at 0.541 kb on - strand at 0.541 kb on - strand at 0.604 kb on + strand, within EX31_RS15945 at 0.622 kb on + strand, within EX31_RS15945 at 0.622 kb on + strand, within EX31_RS15945 at 0.639 kb on + strand, within EX31_RS15945 at 0.639 kb on + strand, within EX31_RS15945 at 0.639 kb on + strand, within EX31_RS15945 at 0.640 kb on - strand, within EX31_RS15945 at 0.640 kb on - strand, within EX31_RS15945 at 0.640 kb on - strand, within EX31_RS15945 at 0.640 kb on - strand, within EX31_RS15945 at 0.640 kb on - strand, within EX31_RS15945 at 0.640 kb on - strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.642 kb on + strand, within EX31_RS15945 at 0.643 kb on - strand, within EX31_RS15945 at 0.643 kb on - strand, within EX31_RS15945 at 0.643 kb on - strand, within EX31_RS15945 at 0.643 kb on - strand, within EX31_RS15945 at 0.643 kb on - strand, within EX31_RS15945 at 0.658 kb on + strand, within EX31_RS15945 at 0.659 kb on - strand, within EX31_RS15945 at 0.682 kb on + strand, within EX31_RS15945 at 0.682 kb on + strand, within EX31_RS15945 at 0.682 kb on + strand, within EX31_RS15945 at 0.683 kb on - strand, within EX31_RS15945 at 0.730 kb on + strand, within EX31_RS15945 at 0.730 kb on + strand, within EX31_RS15945 at 0.730 kb on + strand, within EX31_RS15945 at 0.731 kb on - strand, within EX31_RS15945 at 0.731 kb on - strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.751 kb on + strand, within EX31_RS15945 at 0.752 kb on - strand, within EX31_RS15945 at 0.752 kb on - strand, within EX31_RS15945 at 0.752 kb on - strand, within EX31_RS15945 at 0.752 kb on - strand, within EX31_RS15945 at 0.752 kb on - strand, within EX31_RS15945 at 0.754 kb on + strand, within EX31_RS15945 at 0.754 kb on + strand, within EX31_RS15945 at 0.754 kb on + strand, within EX31_RS15945 at 0.755 kb on - strand, within EX31_RS15945 at 0.781 kb on + strand, within EX31_RS15945 at 0.840 kb on + strand, within EX31_RS15945 at 0.841 kb on - strand, within EX31_RS15945 at 0.927 kb on - strand, within EX31_RS15945 at 0.932 kb on + strand, within EX31_RS15945 at 0.932 kb on + strand, within EX31_RS15945 at 0.932 kb on + strand, within EX31_RS15945 at 0.933 kb on - strand, within EX31_RS15945 at 0.936 kb on + strand, within EX31_RS15945 at 0.936 kb on + strand, within EX31_RS15945 at 0.936 kb on + strand, within EX31_RS15945 at 0.949 kb on + strand, within EX31_RS15945 at 0.957 kb on + strand, within EX31_RS15945 at 0.957 kb on + strand, within EX31_RS15945 at 0.957 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.995 kb on + strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 0.996 kb on - strand, within EX31_RS15945 at 1.003 kb on + strand at 1.003 kb on + strand at 1.006 kb on + strand at 1.006 kb on + strand at 1.006 kb on + strand at 1.006 kb on + strand at 1.006 kb on + strand at 1.006 kb on + strand at 1.006 kb on + strand at 1.007 kb on - strand at 1.007 kb on - strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.010 kb on + strand at 1.011 kb on - strand at 1.011 kb on - strand at 1.011 kb on - strand at 1.011 kb on - strand at 1.011 kb on - strand at 1.031 kb on + strand at 1.031 kb on + strand at 1.031 kb on + strand at 1.032 kb on - strand at 1.049 kb on + strand at 1.050 kb on - strand at 1.050 kb on - strand at 1.058 kb on + strand at 1.059 kb on - strand at 1.072 kb on + strand at 1.072 kb on + strand at 1.072 kb on + strand at 1.075 kb on + strand at 1.075 kb on + strand at 1.075 kb on + strand at 1.075 kb on + strand at 1.076 kb on - strand at 1.076 kb on - strand at 1.076 kb on - strand at 1.124 kb on + strand at 1.125 kb on - strand at 1.125 kb on - strand at 1.125 kb on - strand at 1.146 kb on - strand at 1.949 kb on - strand at 2.513 kb on + strand at 2.514 kb on - strand at 2.521 kb on - strand at 2.526 kb on + strand at 2.547 kb on - strand at 2.559 kb on + strand, within EX31_RS15960 at 2.560 kb on - strand, within EX31_RS15960 at 2.560 kb on - strand, within EX31_RS15960 at 2.564 kb on + strand, within EX31_RS15960 at 2.564 kb on + strand, within EX31_RS15960 at 2.564 kb on + strand, within EX31_RS15960 at 2.564 kb on + strand, within EX31_RS15960 at 2.564 kb on + strand, within EX31_RS15960 at 2.564 kb on + strand, within EX31_RS15960 at 2.565 kb on - strand, within EX31_RS15960 at 2.565 kb on - strand, within EX31_RS15960 at 2.565 kb on - strand, within EX31_RS15960 at 2.565 kb on - strand, within EX31_RS15960 at 2.565 kb on - strand, within EX31_RS15960 at 2.636 kb on + strand, within EX31_RS15960 at 2.636 kb on + strand, within EX31_RS15960 at 2.637 kb on - strand, within EX31_RS15960 at 2.637 kb on - strand, within EX31_RS15960 at 2.637 kb on - strand, within EX31_RS15960 at 2.637 kb on - strand, within EX31_RS15960 at 2.637 kb on - strand, within EX31_RS15960 at 2.639 kb on + strand, within EX31_RS15960 at 2.640 kb on - strand, within EX31_RS15960 at 2.640 kb on - strand, within EX31_RS15960 at 2.640 kb on - strand, within EX31_RS15960 at 2.640 kb on - strand, within EX31_RS15960 at 2.686 kb on - strand, within EX31_RS15960 at 2.750 kb on + strand, within EX31_RS15960 at 2.750 kb on + strand, within EX31_RS15960 at 2.750 kb on + strand, within EX31_RS15960 at 2.750 kb on + strand, within EX31_RS15960 at 2.750 kb on + strand, within EX31_RS15960 at 2.751 kb on - strand, within EX31_RS15960 at 2.771 kb on + strand, within EX31_RS15960 at 2.772 kb on - strand, within EX31_RS15960 at 2.772 kb on - strand, within EX31_RS15960 at 2.780 kb on + strand, within EX31_RS15960 at 2.780 kb on + strand, within EX31_RS15960 at 2.781 kb on - strand, within EX31_RS15960 at 2.814 kb on - strand, within EX31_RS15960 at 2.814 kb on - strand, within EX31_RS15960 at 2.894 kb on + strand, within EX31_RS15960 at 2.895 kb on - strand, within EX31_RS15960 at 2.929 kb on + strand, within EX31_RS15960 at 2.929 kb on + strand, within EX31_RS15960 at 2.929 kb on + strand, within EX31_RS15960 at 2.929 kb on + strand, within EX31_RS15960 at 2.929 kb on + strand, within EX31_RS15960 at 2.929 kb on + strand, within EX31_RS15960 at 2.930 kb on - strand, within EX31_RS15960 at 2.930 kb on - strand, within EX31_RS15960 at 2.930 kb on - strand, within EX31_RS15960 at 2.930 kb on - strand, within EX31_RS15960
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 320 + +0.5 320 + -0.9 322 + +0.9 450 + +1.6 450 + +0.5 450 + -0.2 451 - -1.3 451 - -0.7 451 - -0.9 469 + +0.4 469 + +1.0 469 + +1.8 469 + +0.3 469 + +0.0 469 + +0.1 469 + +0.9 469 + +0.1 469 + -0.1 469 + -0.1 469 + +0.2 469 + +0.9 470 - +0.6 470 - -0.2 470 - +0.1 470 - -0.5 470 - +0.9 470 - +0.5 470 - +0.7 471 + +0.1 472 - +1.2 472 - -0.5 483 + -0.1 483 + -1.4 484 - -0.8 484 - -0.3 484 - -0.1 486 + +1.0 486 + +0.2 486 + +0.9 494 + -0.1 494 + +0.8 501 + +1.4 522 + -0.1 523 - -0.1 530 + +0.5 531 - +0.7 540 + +0.9 540 + +1.2 540 + -0.3 541 - -1.0 541 - +1.4 541 - +0.2 541 - -0.6 604 + EX31_RS15945 0.17 +0.1 622 + EX31_RS15945 0.21 +0.4 622 + EX31_RS15945 0.21 +0.2 639 + EX31_RS15945 0.24 -0.2 639 + EX31_RS15945 0.24 -1.2 639 + EX31_RS15945 0.24 -0.5 640 - EX31_RS15945 0.24 -0.2 640 - EX31_RS15945 0.24 +0.8 640 - EX31_RS15945 0.24 +0.4 640 - EX31_RS15945 0.24 -0.3 640 - EX31_RS15945 0.24 +1.4 640 - EX31_RS15945 0.24 +0.2 642 + EX31_RS15945 0.24 -0.1 642 + EX31_RS15945 0.24 -1.6 642 + EX31_RS15945 0.24 +0.0 642 + EX31_RS15945 0.24 -0.9 642 + EX31_RS15945 0.24 -0.2 642 + EX31_RS15945 0.24 +1.3 642 + EX31_RS15945 0.24 -1.8 643 - EX31_RS15945 0.25 -1.2 643 - EX31_RS15945 0.25 -0.8 643 - EX31_RS15945 0.25 -0.2 643 - EX31_RS15945 0.25 +0.7 643 - EX31_RS15945 0.25 +1.1 658 + EX31_RS15945 0.27 -1.4 659 - EX31_RS15945 0.28 -0.8 682 + EX31_RS15945 0.32 +1.2 682 + EX31_RS15945 0.32 -1.5 682 + EX31_RS15945 0.32 +0.0 683 - EX31_RS15945 0.32 -2.0 730 + EX31_RS15945 0.41 +0.5 730 + EX31_RS15945 0.41 -0.1 730 + EX31_RS15945 0.41 +0.9 731 - EX31_RS15945 0.41 +0.9 731 - EX31_RS15945 0.41 +1.1 751 + EX31_RS15945 0.45 +0.1 751 + EX31_RS15945 0.45 -0.0 751 + EX31_RS15945 0.45 +0.5 751 + EX31_RS15945 0.45 -0.5 751 + EX31_RS15945 0.45 -1.5 751 + EX31_RS15945 0.45 -1.3 751 + EX31_RS15945 0.45 -0.4 751 + EX31_RS15945 0.45 -0.2 751 + EX31_RS15945 0.45 -0.1 752 - EX31_RS15945 0.45 +0.6 752 - EX31_RS15945 0.45 -0.1 752 - EX31_RS15945 0.45 -1.3 752 - EX31_RS15945 0.45 +1.0 752 - EX31_RS15945 0.45 +1.8 754 + EX31_RS15945 0.45 +0.1 754 + EX31_RS15945 0.45 -1.2 754 + EX31_RS15945 0.45 +1.1 755 - EX31_RS15945 0.45 -0.2 781 + EX31_RS15945 0.50 -1.1 840 + EX31_RS15945 0.61 +0.0 841 - EX31_RS15945 0.61 +0.3 927 - EX31_RS15945 0.77 -0.6 932 + EX31_RS15945 0.78 +0.3 932 + EX31_RS15945 0.78 +1.1 932 + EX31_RS15945 0.78 +0.2 933 - EX31_RS15945 0.78 -0.2 936 + EX31_RS15945 0.79 +0.4 936 + EX31_RS15945 0.79 +0.3 936 + EX31_RS15945 0.79 -0.0 949 + EX31_RS15945 0.81 -2.0 957 + EX31_RS15945 0.83 +1.3 957 + EX31_RS15945 0.83 -1.1 957 + EX31_RS15945 0.83 -0.4 995 + EX31_RS15945 0.90 -1.0 995 + EX31_RS15945 0.90 +0.6 995 + EX31_RS15945 0.90 -0.4 995 + EX31_RS15945 0.90 -0.3 995 + EX31_RS15945 0.90 +0.1 995 + EX31_RS15945 0.90 -0.1 995 + EX31_RS15945 0.90 +0.4 995 + EX31_RS15945 0.90 -0.4 995 + EX31_RS15945 0.90 +0.4 995 + EX31_RS15945 0.90 +0.2 996 - EX31_RS15945 0.90 -2.9 996 - EX31_RS15945 0.90 -2.4 996 - EX31_RS15945 0.90 -0.1 996 - EX31_RS15945 0.90 +0.5 996 - EX31_RS15945 0.90 +0.9 996 - EX31_RS15945 0.90 -0.5 996 - EX31_RS15945 0.90 -2.0 996 - EX31_RS15945 0.90 +0.1 996 - EX31_RS15945 0.90 +1.0 996 - EX31_RS15945 0.90 -0.3 996 - EX31_RS15945 0.90 +2.2 1,003 + +0.6 1,003 + -0.2 1,006 + +0.5 1,006 + -1.1 1,006 + +0.1 1,006 + +0.3 1,006 + +0.3 1,006 + +0.2 1,006 + -0.2 1,007 - +1.6 1,007 - +0.2 1,010 + -0.6 1,010 + +0.1 1,010 + +0.1 1,010 + +0.4 1,010 + +0.5 1,010 + -0.4 1,010 + +0.6 1,010 + +0.6 1,011 - +0.4 1,011 - -0.8 1,011 - +1.6 1,011 - +0.4 1,011 - -0.2 1,031 + -0.1 1,031 + +1.4 1,031 + +0.7 1,032 - +0.4 1,049 + +0.1 1,050 - +0.2 1,050 - +0.3 1,058 + -0.4 1,059 - +1.1 1,072 + +0.1 1,072 + +0.8 1,072 + +0.9 1,075 + -0.3 1,075 + +1.4 1,075 + +2.2 1,075 + +2.1 1,076 - -1.5 1,076 - -1.8 1,076 - +0.4 1,124 + -1.7 1,125 - -0.9 1,125 - +2.4 1,125 - +0.0 1,146 - -0.9 1,949 - +1.4 2,513 + +0.4 2,514 - -0.3 2,521 - +0.3 2,526 + -2.4 2,547 - -0.6 2,559 + EX31_RS15960 0.11 -0.3 2,560 - EX31_RS15960 0.11 +0.7 2,560 - EX31_RS15960 0.11 -0.9 2,564 + EX31_RS15960 0.12 -0.2 2,564 + EX31_RS15960 0.12 -0.7 2,564 + EX31_RS15960 0.12 +0.3 2,564 + EX31_RS15960 0.12 -0.5 2,564 + EX31_RS15960 0.12 +0.1 2,564 + EX31_RS15960 0.12 +0.1 2,565 - EX31_RS15960 0.12 +0.1 2,565 - EX31_RS15960 0.12 +0.4 2,565 - EX31_RS15960 0.12 +0.3 2,565 - EX31_RS15960 0.12 -1.5 2,565 - EX31_RS15960 0.12 -1.5 2,636 + EX31_RS15960 0.25 +2.0 2,636 + EX31_RS15960 0.25 +0.4 2,637 - EX31_RS15960 0.25 -0.4 2,637 - EX31_RS15960 0.25 -0.8 2,637 - EX31_RS15960 0.25 -0.1 2,637 - EX31_RS15960 0.25 +2.2 2,637 - EX31_RS15960 0.25 +1.8 2,639 + EX31_RS15960 0.25 -0.2 2,640 - EX31_RS15960 0.26 +0.1 2,640 - EX31_RS15960 0.26 -0.8 2,640 - EX31_RS15960 0.26 +0.1 2,640 - EX31_RS15960 0.26 +2.2 2,686 - EX31_RS15960 0.34 +0.3 2,750 + EX31_RS15960 0.45 -1.2 2,750 + EX31_RS15960 0.45 +1.0 2,750 + EX31_RS15960 0.45 -0.5 2,750 + EX31_RS15960 0.45 +0.8 2,750 + EX31_RS15960 0.45 +0.1 2,751 - EX31_RS15960 0.45 +0.5 2,771 + EX31_RS15960 0.49 +1.1 2,772 - EX31_RS15960 0.49 -0.4 2,772 - EX31_RS15960 0.49 -2.2 2,780 + EX31_RS15960 0.51 -0.7 2,780 + EX31_RS15960 0.51 +0.2 2,781 - EX31_RS15960 0.51 +0.1 2,814 - EX31_RS15960 0.57 -0.3 2,814 - EX31_RS15960 0.57 +0.1 2,894 + EX31_RS15960 0.71 -0.0 2,895 - EX31_RS15960 0.71 +0.4 2,929 + EX31_RS15960 0.77 +0.8 2,929 + EX31_RS15960 0.77 +0.7 2,929 + EX31_RS15960 0.77 +0.7 2,929 + EX31_RS15960 0.77 +0.6 2,929 + EX31_RS15960 0.77 -0.2 2,929 + EX31_RS15960 0.77 -0.2 2,930 - EX31_RS15960 0.77 +0.4 2,930 - EX31_RS15960 0.77 -0.1 2,930 - EX31_RS15960 0.77 -2.0 2,930 - EX31_RS15960 0.77 -0.9
Or see this region's nucleotide sequence