Strain Fitness in Rahnella sp. WP5 around EX31_RS15360

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15345 and EX31_RS15350 overlap by 14 nucleotidesEX31_RS15350 and EX31_RS15355 are separated by 154 nucleotidesEX31_RS15355 and EX31_RS15360 are separated by 17 nucleotidesEX31_RS15360 and EX31_RS15365 are separated by 46 nucleotides EX31_RS15345: EX31_RS15345 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 20,494 to 21,879 _RS15345 EX31_RS15350: EX31_RS15350 - nitrogen fixation protein NifX, at 21,866 to 22,330 _RS15350 EX31_RS15355: EX31_RS15355 - hypothetical protein, at 22,485 to 22,823 _RS15355 EX31_RS15360: EX31_RS15360 - Fe-S cluster assembly protein NifU, at 22,841 to 23,668 _RS15360 EX31_RS15365: EX31_RS15365 - cysteine desulfurase NifS, at 23,715 to 24,920 _RS15365 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.992 kb on + strand, within EX31_RS15350at 22.112 kb on + strand, within EX31_RS15350at 22.112 kb on + strand, within EX31_RS15350at 22.112 kb on + strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.345 kb on + strandat 22.346 kb on - strandat 22.364 kb on - strandat 22.405 kb on + strandat 22.405 kb on + strandat 22.406 kb on - strandat 22.419 kb on - strandat 22.461 kb on + strandat 22.461 kb on + strandat 22.462 kb on - strandat 22.462 kb on - strandat 22.493 kb on - strandat 22.573 kb on + strand, within EX31_RS15355at 22.573 kb on + strand, within EX31_RS15355at 22.573 kb on + strand, within EX31_RS15355at 22.574 kb on - strand, within EX31_RS15355at 22.574 kb on - strand, within EX31_RS15355at 22.645 kb on + strand, within EX31_RS15355at 22.645 kb on + strand, within EX31_RS15355at 22.646 kb on - strand, within EX31_RS15355at 22.646 kb on - strand, within EX31_RS15355at 22.696 kb on + strand, within EX31_RS15355at 22.696 kb on + strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.747 kb on + strand, within EX31_RS15355at 22.748 kb on - strand, within EX31_RS15355at 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.800 kb on - strandat 22.800 kb on - strandat 22.835 kb on - strandat 22.850 kb on + strandat 23.198 kb on + strand, within EX31_RS15360at 23.198 kb on + strand, within EX31_RS15360at 23.198 kb on + strand, within EX31_RS15360at 23.199 kb on - strand, within EX31_RS15360at 23.199 kb on - strand, within EX31_RS15360at 23.199 kb on - strand, within EX31_RS15360at 23.201 kb on + strand, within EX31_RS15360at 23.202 kb on - strand, within EX31_RS15360at 23.245 kb on + strand, within EX31_RS15360at 23.333 kb on + strand, within EX31_RS15360at 23.333 kb on + strand, within EX31_RS15360at 23.333 kb on + strand, within EX31_RS15360at 23.334 kb on - strand, within EX31_RS15360at 23.632 kb on + strandat 23.633 kb on - strandat 23.633 kb on - strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.642 kb on + strandat 23.643 kb on - strandat 23.643 kb on - strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.644 kb on + strandat 23.645 kb on - strandat 23.645 kb on - strandat 23.645 kb on - strandat 23.645 kb on - strandat 23.645 kb on - strandat 23.700 kb on - strandat 23.727 kb on + strandat 23.727 kb on + strandat 23.727 kb on + strandat 23.727 kb on + strandat 23.787 kb on + strandat 23.799 kb on + strandat 23.898 kb on + strand, within EX31_RS15365at 23.898 kb on + strand, within EX31_RS15365at 23.898 kb on + strand, within EX31_RS15365at 23.899 kb on - strand, within EX31_RS15365at 23.899 kb on - strand, within EX31_RS15365at 23.899 kb on - strand, within EX31_RS15365at 23.900 kb on + strand, within EX31_RS15365at 23.901 kb on - strand, within EX31_RS15365at 23.901 kb on - strand, within EX31_RS15365at 23.913 kb on - strand, within EX31_RS15365at 23.955 kb on + strand, within EX31_RS15365at 23.955 kb on + strand, within EX31_RS15365at 23.956 kb on - strand, within EX31_RS15365at 23.993 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.057 kb on + strand, within EX31_RS15365at 24.058 kb on - strand, within EX31_RS15365at 24.058 kb on - strand, within EX31_RS15365at 24.058 kb on - strand, within EX31_RS15365at 24.058 kb on - strand, within EX31_RS15365at 24.072 kb on - strand, within EX31_RS15365at 24.111 kb on + strand, within EX31_RS15365at 24.111 kb on + strand, within EX31_RS15365at 24.112 kb on - strand, within EX31_RS15365at 24.112 kb on - strand, within EX31_RS15365at 24.112 kb on - strand, within EX31_RS15365at 24.112 kb on - strand, within EX31_RS15365at 24.114 kb on + strand, within EX31_RS15365at 24.115 kb on - strand, within EX31_RS15365at 24.115 kb on - strand, within EX31_RS15365at 24.115 kb on - strand, within EX31_RS15365at 24.181 kb on + strand, within EX31_RS15365at 24.181 kb on + strand, within EX31_RS15365at 24.182 kb on - strand, within EX31_RS15365at 24.182 kb on - strand, within EX31_RS15365at 24.317 kb on + strand, within EX31_RS15365at 24.317 kb on + strand, within EX31_RS15365at 24.318 kb on - strand, within EX31_RS15365at 24.351 kb on + strand, within EX31_RS15365at 24.352 kb on - strand, within EX31_RS15365at 24.352 kb on - strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.482 kb on + strand, within EX31_RS15365at 24.483 kb on - strand, within EX31_RS15365at 24.483 kb on - strand, within EX31_RS15365at 24.483 kb on - strand, within EX31_RS15365at 24.483 kb on - strand, within EX31_RS15365at 24.483 kb on - strand, within EX31_RS15365at 24.483 kb on - strand, within EX31_RS15365at 24.593 kb on + strand, within EX31_RS15365at 24.593 kb on + strand, within EX31_RS15365at 24.593 kb on + strand, within EX31_RS15365at 24.594 kb on - strand, within EX31_RS15365at 24.594 kb on - strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.615 kb on + strand, within EX31_RS15365at 24.616 kb on - strand, within EX31_RS15365at 24.616 kb on - strand, within EX31_RS15365at 24.616 kb on - strand, within EX31_RS15365at 24.616 kb on - strand, within EX31_RS15365at 24.616 kb on - strand, within EX31_RS15365at 24.617 kb on + strand, within EX31_RS15365at 24.617 kb on + strand, within EX31_RS15365at 24.618 kb on - strand, within EX31_RS15365at 24.618 kb on - strand, within EX31_RS15365at 24.647 kb on + strand, within EX31_RS15365at 24.648 kb on - strand, within EX31_RS15365at 24.659 kb on + strand, within EX31_RS15365

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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21,992 + EX31_RS15350 0.27 -0.2
22,112 + EX31_RS15350 0.53 +0.3
22,112 + EX31_RS15350 0.53 -0.3
22,112 + EX31_RS15350 0.53 +0.1
22,113 - EX31_RS15350 0.53 +0.4
22,113 - EX31_RS15350 0.53 -2.1
22,113 - EX31_RS15350 0.53 -1.6
22,113 - EX31_RS15350 0.53 +0.7
22,345 + +0.4
22,346 - +1.1
22,364 - -1.0
22,405 + -0.2
22,405 + +0.0
22,406 - +1.0
22,419 - -0.4
22,461 + +1.0
22,461 + -0.0
22,462 - -1.3
22,462 - +1.2
22,493 - +0.7
22,573 + EX31_RS15355 0.26 -0.1
22,573 + EX31_RS15355 0.26 -3.0
22,573 + EX31_RS15355 0.26 +0.4
22,574 - EX31_RS15355 0.26 +1.1
22,574 - EX31_RS15355 0.26 +0.4
22,645 + EX31_RS15355 0.47 +0.4
22,645 + EX31_RS15355 0.47 +0.0
22,646 - EX31_RS15355 0.47 +1.7
22,646 - EX31_RS15355 0.47 -1.6
22,696 + EX31_RS15355 0.62 -0.0
22,696 + EX31_RS15355 0.62 +1.4
22,700 - EX31_RS15355 0.63 -0.8
22,700 - EX31_RS15355 0.63 -1.1
22,700 - EX31_RS15355 0.63 -1.1
22,700 - EX31_RS15355 0.63 -0.6
22,747 + EX31_RS15355 0.77 -1.7
22,748 - EX31_RS15355 0.78 -0.6
22,799 + +0.4
22,799 + +0.6
22,799 + +1.0
22,799 + +0.1
22,799 + +0.5
22,799 + -1.9
22,800 - +1.0
22,800 - +0.7
22,835 - -1.1
22,850 + +0.4
23,198 + EX31_RS15360 0.43 +0.4
23,198 + EX31_RS15360 0.43 +0.8
23,198 + EX31_RS15360 0.43 +1.2
23,199 - EX31_RS15360 0.43 +0.6
23,199 - EX31_RS15360 0.43 +0.9
23,199 - EX31_RS15360 0.43 +1.4
23,201 + EX31_RS15360 0.43 +0.3
23,202 - EX31_RS15360 0.44 +2.0
23,245 + EX31_RS15360 0.49 +1.4
23,333 + EX31_RS15360 0.59 +0.6
23,333 + EX31_RS15360 0.59 -2.9
23,333 + EX31_RS15360 0.59 +1.3
23,334 - EX31_RS15360 0.60 +1.7
23,632 + +0.4
23,633 - +0.4
23,633 - +2.3
23,642 + +0.1
23,642 + -0.6
23,642 + +0.2
23,642 + +1.0
23,642 + +0.3
23,642 + -0.2
23,642 + +0.4
23,642 + +2.4
23,642 + +0.4
23,643 - -3.4
23,643 - -0.6
23,644 + +0.3
23,644 + +1.0
23,644 + -0.0
23,644 + -1.1
23,644 + -0.4
23,644 + +0.1
23,644 + +0.3
23,644 + +0.3
23,644 + -1.0
23,644 + +1.2
23,644 + +0.5
23,644 + +2.0
23,644 + +0.7
23,645 - +0.4
23,645 - +1.4
23,645 - +0.4
23,645 - +0.9
23,645 - +0.1
23,700 - -1.1
23,727 + -0.6
23,727 + -2.7
23,727 + +1.9
23,727 + -0.3
23,787 + +0.1
23,799 + -0.4
23,898 + EX31_RS15365 0.15 +0.3
23,898 + EX31_RS15365 0.15 +1.6
23,898 + EX31_RS15365 0.15 -0.6
23,899 - EX31_RS15365 0.15 -0.6
23,899 - EX31_RS15365 0.15 -1.1
23,899 - EX31_RS15365 0.15 -1.8
23,900 + EX31_RS15365 0.15 -0.6
23,901 - EX31_RS15365 0.15 +0.7
23,901 - EX31_RS15365 0.15 -0.3
23,913 - EX31_RS15365 0.16 -0.0
23,955 + EX31_RS15365 0.20 +0.2
23,955 + EX31_RS15365 0.20 -1.1
23,956 - EX31_RS15365 0.20 -0.1
23,993 + EX31_RS15365 0.23 -0.1
24,057 + EX31_RS15365 0.28 +0.3
24,057 + EX31_RS15365 0.28 -0.6
24,057 + EX31_RS15365 0.28 +2.3
24,057 + EX31_RS15365 0.28 +0.4
24,057 + EX31_RS15365 0.28 +1.0
24,057 + EX31_RS15365 0.28 +0.6
24,057 + EX31_RS15365 0.28 +0.3
24,058 - EX31_RS15365 0.28 -0.6
24,058 - EX31_RS15365 0.28 -0.0
24,058 - EX31_RS15365 0.28 -0.1
24,058 - EX31_RS15365 0.28 +0.3
24,072 - EX31_RS15365 0.30 +0.0
24,111 + EX31_RS15365 0.33 +2.0
24,111 + EX31_RS15365 0.33 -0.0
24,112 - EX31_RS15365 0.33 +0.0
24,112 - EX31_RS15365 0.33 +1.9
24,112 - EX31_RS15365 0.33 +0.3
24,112 - EX31_RS15365 0.33 -0.4
24,114 + EX31_RS15365 0.33 -1.1
24,115 - EX31_RS15365 0.33 +0.9
24,115 - EX31_RS15365 0.33 -0.3
24,115 - EX31_RS15365 0.33 -1.1
24,181 + EX31_RS15365 0.39 +1.1
24,181 + EX31_RS15365 0.39 -0.1
24,182 - EX31_RS15365 0.39 -0.9
24,182 - EX31_RS15365 0.39 -0.3
24,317 + EX31_RS15365 0.50 +1.0
24,317 + EX31_RS15365 0.50 +0.6
24,318 - EX31_RS15365 0.50 -1.0
24,351 + EX31_RS15365 0.53 +0.4
24,352 - EX31_RS15365 0.53 -1.3
24,352 - EX31_RS15365 0.53 +0.4
24,482 + EX31_RS15365 0.64 +1.1
24,482 + EX31_RS15365 0.64 +0.9
24,482 + EX31_RS15365 0.64 +0.4
24,482 + EX31_RS15365 0.64 +1.4
24,482 + EX31_RS15365 0.64 -3.3
24,482 + EX31_RS15365 0.64 -2.1
24,482 + EX31_RS15365 0.64 +2.0
24,483 - EX31_RS15365 0.64 +0.0
24,483 - EX31_RS15365 0.64 -0.3
24,483 - EX31_RS15365 0.64 +0.9
24,483 - EX31_RS15365 0.64 +0.3
24,483 - EX31_RS15365 0.64 -1.1
24,483 - EX31_RS15365 0.64 +0.0
24,593 + EX31_RS15365 0.73 +1.5
24,593 + EX31_RS15365 0.73 -0.1
24,593 + EX31_RS15365 0.73 +0.6
24,594 - EX31_RS15365 0.73 -0.3
24,594 - EX31_RS15365 0.73 +0.4
24,615 + EX31_RS15365 0.75 +0.3
24,615 + EX31_RS15365 0.75 -0.4
24,615 + EX31_RS15365 0.75 +0.1
24,615 + EX31_RS15365 0.75 +2.4
24,615 + EX31_RS15365 0.75 -1.6
24,615 + EX31_RS15365 0.75 +1.4
24,615 + EX31_RS15365 0.75 +1.0
24,615 + EX31_RS15365 0.75 -0.8
24,616 - EX31_RS15365 0.75 +0.4
24,616 - EX31_RS15365 0.75 +1.4
24,616 - EX31_RS15365 0.75 -0.8
24,616 - EX31_RS15365 0.75 +0.8
24,616 - EX31_RS15365 0.75 +0.4
24,617 + EX31_RS15365 0.75 +0.9
24,617 + EX31_RS15365 0.75 -0.0
24,618 - EX31_RS15365 0.75 -0.0
24,618 - EX31_RS15365 0.75 -0.1
24,647 + EX31_RS15365 0.77 -0.4
24,648 - EX31_RS15365 0.77 -0.1
24,659 + EX31_RS15365 0.78 +0.4

Or see this region's nucleotide sequence