Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14590 and EX31_RS14595 are separated by 61 nucleotides EX31_RS14595 and EX31_RS14600 are separated by 60 nucleotides EX31_RS14600 and EX31_RS14605 are separated by 2 nucleotides EX31_RS14605 and EX31_RS14610 are separated by 3 nucleotides EX31_RS14610 and EX31_RS14615 are separated by 73 nucleotides
EX31_RS14590: EX31_RS14590 - transcription/translation regulatory transformer protein RfaH, at 11,504 to 12,043
_RS14590
EX31_RS14595: EX31_RS14595 - 3'-5' ssDNA/RNA exonuclease TatD, at 12,105 to 12,896
_RS14595
EX31_RS14600: EX31_RS14600 - Sec-independent protein translocase subunit TatC, at 12,957 to 13,724
_RS14600
EX31_RS14605: EX31_RS14605 - Sec-independent protein translocase subunit TatB, at 13,727 to 14,374
_RS14605
EX31_RS14610: EX31_RS14610 - twin-arginine translocase subunit TatE, at 14,378 to 14,644
_RS14610
EX31_RS14615: EX31_RS14615 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 14,718 to 16,349
_RS14615
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 11.983 kb on + strand, within EX31_RS14590 at 12.014 kb on - strand at 12.061 kb on + strand at 12.061 kb on + strand at 12.061 kb on + strand at 12.061 kb on + strand at 12.094 kb on + strand at 12.094 kb on + strand at 12.095 kb on - strand at 12.095 kb on - strand at 12.095 kb on - strand at 12.134 kb on + strand at 12.155 kb on + strand at 12.155 kb on + strand at 12.155 kb on + strand at 12.209 kb on + strand, within EX31_RS14595 at 12.209 kb on + strand, within EX31_RS14595 at 12.273 kb on + strand, within EX31_RS14595 at 12.273 kb on + strand, within EX31_RS14595 at 12.273 kb on + strand, within EX31_RS14595 at 12.274 kb on - strand, within EX31_RS14595 at 12.274 kb on - strand, within EX31_RS14595 at 12.277 kb on + strand, within EX31_RS14595 at 12.277 kb on + strand, within EX31_RS14595 at 12.277 kb on + strand, within EX31_RS14595 at 12.278 kb on - strand, within EX31_RS14595 at 12.278 kb on - strand, within EX31_RS14595 at 12.278 kb on - strand, within EX31_RS14595 at 12.278 kb on - strand, within EX31_RS14595 at 12.278 kb on - strand, within EX31_RS14595 at 12.300 kb on + strand, within EX31_RS14595 at 12.336 kb on + strand, within EX31_RS14595 at 12.336 kb on + strand, within EX31_RS14595 at 12.336 kb on + strand, within EX31_RS14595 at 12.378 kb on - strand, within EX31_RS14595 at 12.399 kb on + strand, within EX31_RS14595 at 12.399 kb on + strand, within EX31_RS14595 at 12.399 kb on + strand, within EX31_RS14595 at 12.400 kb on - strand, within EX31_RS14595 at 12.400 kb on - strand, within EX31_RS14595 at 12.400 kb on - strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.403 kb on + strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.404 kb on - strand, within EX31_RS14595 at 12.534 kb on + strand, within EX31_RS14595 at 12.534 kb on + strand, within EX31_RS14595 at 12.534 kb on + strand, within EX31_RS14595 at 12.534 kb on + strand, within EX31_RS14595 at 12.855 kb on - strand at 12.855 kb on - strand at 12.879 kb on + strand at 12.879 kb on + strand at 12.879 kb on + strand at 12.879 kb on + strand at 12.879 kb on + strand at 12.879 kb on + strand at 12.880 kb on - strand at 12.880 kb on - strand at 12.880 kb on - strand at 12.880 kb on - strand at 12.880 kb on - strand at 12.937 kb on + strand at 12.937 kb on + strand at 12.937 kb on + strand at 12.937 kb on + strand at 12.937 kb on + strand at 12.937 kb on + strand at 12.937 kb on + strand at 12.938 kb on - strand at 12.938 kb on - strand at 12.938 kb on - strand at 12.938 kb on - strand at 12.938 kb on - strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.941 kb on + strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.942 kb on - strand at 12.943 kb on + strand at 12.959 kb on - strand at 12.959 kb on - strand at 13.018 kb on + strand at 13.019 kb on - strand at 13.057 kb on + strand, within EX31_RS14600 at 13.057 kb on + strand, within EX31_RS14600 at 13.058 kb on - strand, within EX31_RS14600 at 13.058 kb on - strand, within EX31_RS14600 at 13.141 kb on + strand, within EX31_RS14600 at 13.141 kb on + strand, within EX31_RS14600 at 13.142 kb on - strand, within EX31_RS14600 at 13.142 kb on - strand, within EX31_RS14600 at 13.264 kb on + strand, within EX31_RS14600 at 13.264 kb on + strand, within EX31_RS14600 at 13.265 kb on - strand, within EX31_RS14600 at 13.265 kb on - strand, within EX31_RS14600 at 13.265 kb on - strand, within EX31_RS14600 at 13.284 kb on + strand, within EX31_RS14600 at 13.285 kb on - strand, within EX31_RS14600 at 13.370 kb on - strand, within EX31_RS14600 at 13.511 kb on + strand, within EX31_RS14600 at 13.517 kb on + strand, within EX31_RS14600 at 13.600 kb on + strand, within EX31_RS14600 at 13.601 kb on - strand, within EX31_RS14600 at 13.601 kb on - strand, within EX31_RS14600 at 13.601 kb on - strand, within EX31_RS14600 at 13.618 kb on + strand, within EX31_RS14600 at 13.644 kb on - strand, within EX31_RS14600 at 13.653 kb on - strand at 13.653 kb on - strand at 13.653 kb on - strand at 13.653 kb on - strand at 13.662 kb on + strand at 13.662 kb on + strand at 13.663 kb on - strand at 13.697 kb on + strand at 13.709 kb on + strand at 13.895 kb on - strand, within EX31_RS14605 at 13.895 kb on - strand, within EX31_RS14605 at 14.102 kb on - strand, within EX31_RS14605 at 14.102 kb on - strand, within EX31_RS14605 at 14.102 kb on - strand, within EX31_RS14605 at 14.279 kb on + strand, within EX31_RS14605 at 14.280 kb on - strand, within EX31_RS14605 at 14.280 kb on - strand, within EX31_RS14605 at 14.280 kb on - strand, within EX31_RS14605 at 14.280 kb on - strand, within EX31_RS14605 at 14.357 kb on - strand at 14.380 kb on - strand at 14.380 kb on - strand at 14.380 kb on - strand at 14.380 kb on - strand at 14.381 kb on + strand at 14.382 kb on - strand at 14.382 kb on - strand at 14.382 kb on - strand at 14.382 kb on - strand at 14.382 kb on - strand at 14.382 kb on - strand at 14.595 kb on - strand, within EX31_RS14610 at 14.595 kb on - strand, within EX31_RS14610 at 14.595 kb on - strand, within EX31_RS14610 at 14.630 kb on - strand at 14.633 kb on - strand at 14.636 kb on - strand at 14.677 kb on + strand at 14.677 kb on + strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand at 14.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 11,983 + EX31_RS14590 0.89 +1.4 12,014 - -0.8 12,061 + -0.3 12,061 + -1.3 12,061 + -0.8 12,061 + +0.6 12,094 + +0.5 12,094 + +0.8 12,095 - +0.8 12,095 - -0.1 12,095 - -0.8 12,134 + +0.3 12,155 + +0.7 12,155 + -0.8 12,155 + +1.0 12,209 + EX31_RS14595 0.13 +0.7 12,209 + EX31_RS14595 0.13 -2.3 12,273 + EX31_RS14595 0.21 -0.5 12,273 + EX31_RS14595 0.21 +0.4 12,273 + EX31_RS14595 0.21 +0.8 12,274 - EX31_RS14595 0.21 +0.3 12,274 - EX31_RS14595 0.21 -0.1 12,277 + EX31_RS14595 0.22 +0.5 12,277 + EX31_RS14595 0.22 +1.2 12,277 + EX31_RS14595 0.22 -0.5 12,278 - EX31_RS14595 0.22 +0.5 12,278 - EX31_RS14595 0.22 -0.2 12,278 - EX31_RS14595 0.22 +1.0 12,278 - EX31_RS14595 0.22 +0.1 12,278 - EX31_RS14595 0.22 +0.2 12,300 + EX31_RS14595 0.25 +0.2 12,336 + EX31_RS14595 0.29 +1.3 12,336 + EX31_RS14595 0.29 +0.7 12,336 + EX31_RS14595 0.29 -0.7 12,378 - EX31_RS14595 0.34 +0.8 12,399 + EX31_RS14595 0.37 +1.1 12,399 + EX31_RS14595 0.37 -2.3 12,399 + EX31_RS14595 0.37 +0.5 12,400 - EX31_RS14595 0.37 -0.1 12,400 - EX31_RS14595 0.37 +1.0 12,400 - EX31_RS14595 0.37 -0.0 12,403 + EX31_RS14595 0.38 +1.2 12,403 + EX31_RS14595 0.38 -0.1 12,403 + EX31_RS14595 0.38 +1.2 12,403 + EX31_RS14595 0.38 -0.2 12,403 + EX31_RS14595 0.38 +1.5 12,403 + EX31_RS14595 0.38 +0.2 12,403 + EX31_RS14595 0.38 -1.8 12,403 + EX31_RS14595 0.38 -0.1 12,403 + EX31_RS14595 0.38 +0.7 12,403 + EX31_RS14595 0.38 +0.0 12,403 + EX31_RS14595 0.38 +0.0 12,404 - EX31_RS14595 0.38 +1.4 12,404 - EX31_RS14595 0.38 -0.4 12,404 - EX31_RS14595 0.38 +0.5 12,404 - EX31_RS14595 0.38 +2.4 12,404 - EX31_RS14595 0.38 +0.3 12,404 - EX31_RS14595 0.38 +1.3 12,404 - EX31_RS14595 0.38 +0.5 12,404 - EX31_RS14595 0.38 -1.2 12,534 + EX31_RS14595 0.54 +0.5 12,534 + EX31_RS14595 0.54 +0.7 12,534 + EX31_RS14595 0.54 -0.5 12,534 + EX31_RS14595 0.54 +1.0 12,855 - +0.1 12,855 - -0.0 12,879 + -1.0 12,879 + +0.3 12,879 + -0.7 12,879 + -0.8 12,879 + +0.6 12,879 + +0.5 12,880 - -0.2 12,880 - +0.5 12,880 - -0.1 12,880 - -0.2 12,880 - +0.3 12,937 + +1.1 12,937 + +0.7 12,937 + +2.0 12,937 + -0.1 12,937 + +0.7 12,937 + -1.0 12,937 + -0.2 12,938 - +1.2 12,938 - -0.1 12,938 - -0.3 12,938 - +0.2 12,938 - +0.5 12,941 + +1.0 12,941 + -1.6 12,941 + -0.1 12,941 + +0.9 12,941 + +1.1 12,941 + -1.0 12,941 + -1.1 12,941 + +0.8 12,941 + +0.0 12,941 + +0.2 12,941 + -2.1 12,941 + -0.4 12,941 + -1.0 12,941 + +0.0 12,941 + -0.1 12,941 + +0.6 12,941 + -1.7 12,941 + -0.8 12,942 - -0.3 12,942 - -0.3 12,942 - +0.1 12,942 - -1.1 12,942 - +0.6 12,942 - -0.2 12,942 - -0.6 12,942 - +0.5 12,942 - -0.6 12,942 - -0.7 12,942 - +0.2 12,942 - +0.7 12,942 - -0.0 12,942 - +0.1 12,942 - +0.2 12,942 - -0.7 12,943 + +0.9 12,959 - -0.1 12,959 - +1.3 13,018 + +1.0 13,019 - -1.5 13,057 + EX31_RS14600 0.13 -1.8 13,057 + EX31_RS14600 0.13 -0.8 13,058 - EX31_RS14600 0.13 -0.1 13,058 - EX31_RS14600 0.13 -0.1 13,141 + EX31_RS14600 0.24 +1.1 13,141 + EX31_RS14600 0.24 -0.7 13,142 - EX31_RS14600 0.24 -1.7 13,142 - EX31_RS14600 0.24 -0.1 13,264 + EX31_RS14600 0.40 +0.2 13,264 + EX31_RS14600 0.40 -0.5 13,265 - EX31_RS14600 0.40 -1.7 13,265 - EX31_RS14600 0.40 -0.1 13,265 - EX31_RS14600 0.40 -0.1 13,284 + EX31_RS14600 0.43 +1.5 13,285 - EX31_RS14600 0.43 -0.3 13,370 - EX31_RS14600 0.54 +1.8 13,511 + EX31_RS14600 0.72 +1.5 13,517 + EX31_RS14600 0.73 -0.3 13,600 + EX31_RS14600 0.84 -0.4 13,601 - EX31_RS14600 0.84 +0.9 13,601 - EX31_RS14600 0.84 +1.5 13,601 - EX31_RS14600 0.84 -1.1 13,618 + EX31_RS14600 0.86 -1.1 13,644 - EX31_RS14600 0.89 -1.5 13,653 - -0.3 13,653 - +0.3 13,653 - +1.2 13,653 - +0.5 13,662 + +0.2 13,662 + +2.2 13,663 - +0.9 13,697 + -0.5 13,709 + -0.8 13,895 - EX31_RS14605 0.26 +0.4 13,895 - EX31_RS14605 0.26 +0.5 14,102 - EX31_RS14605 0.58 -0.6 14,102 - EX31_RS14605 0.58 +0.1 14,102 - EX31_RS14605 0.58 +0.9 14,279 + EX31_RS14605 0.85 -1.3 14,280 - EX31_RS14605 0.85 +1.9 14,280 - EX31_RS14605 0.85 +0.5 14,280 - EX31_RS14605 0.85 -1.8 14,280 - EX31_RS14605 0.85 +0.3 14,357 - +0.8 14,380 - +0.4 14,380 - +0.6 14,380 - +3.2 14,380 - -0.2 14,381 + +0.5 14,382 - +0.7 14,382 - +0.0 14,382 - -0.2 14,382 - -1.6 14,382 - +1.5 14,382 - +0.9 14,595 - EX31_RS14610 0.81 +1.5 14,595 - EX31_RS14610 0.81 +1.0 14,595 - EX31_RS14610 0.81 +1.0 14,630 - +0.2 14,633 - -0.1 14,636 - +0.0 14,677 + +0.7 14,677 + +0.8 14,678 - +0.4 14,678 - -0.4 14,678 - +0.5 14,678 - +1.0 14,678 - +0.2 14,678 - +0.9 14,678 - +0.4 14,678 - -1.2 14,678 - -1.1
Or see this region's nucleotide sequence