Strain Fitness in Rahnella sp. WP5 around EX31_RS14220

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14215 and EX31_RS14220 are separated by 330 nucleotidesEX31_RS14220 and EX31_RS25365 are separated by 174 nucleotidesEX31_RS25365 and EX31_RS14225 are separated by 201 nucleotides EX31_RS14215: EX31_RS14215 - cystathionine gamma-synthase, at 23,291 to 24,451 _RS14215 EX31_RS14220: EX31_RS14220 - met regulon transcriptional regulator MetJ, at 24,782 to 25,099 _RS14220 EX31_RS25365: EX31_RS25365 - 50S ribosomal protein L31, at 25,274 to 25,486 _RS25365 EX31_RS14225: EX31_RS14225 - primosomal protein N', at 25,688 to 27,883 _RS14225 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2 3at 23.812 kb on + strand, within EX31_RS14215at 23.812 kb on + strand, within EX31_RS14215at 23.812 kb on + strand, within EX31_RS14215at 23.812 kb on + strand, within EX31_RS14215at 23.812 kb on + strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.813 kb on - strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.816 kb on + strand, within EX31_RS14215at 23.817 kb on - strand, within EX31_RS14215at 23.817 kb on - strand, within EX31_RS14215at 23.817 kb on - strand, within EX31_RS14215at 23.856 kb on + strand, within EX31_RS14215at 23.857 kb on - strand, within EX31_RS14215at 23.857 kb on - strand, within EX31_RS14215at 23.857 kb on - strand, within EX31_RS14215at 23.857 kb on - strand, within EX31_RS14215at 23.857 kb on - strand, within EX31_RS14215at 23.860 kb on + strand, within EX31_RS14215at 23.860 kb on + strand, within EX31_RS14215at 23.860 kb on + strand, within EX31_RS14215at 23.860 kb on + strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.861 kb on - strand, within EX31_RS14215at 23.863 kb on + strand, within EX31_RS14215at 23.863 kb on + strand, within EX31_RS14215at 23.863 kb on + strand, within EX31_RS14215at 23.863 kb on + strand, within EX31_RS14215at 23.863 kb on + strand, within EX31_RS14215at 23.863 kb on + strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.864 kb on - strand, within EX31_RS14215at 23.879 kb on + strand, within EX31_RS14215at 23.880 kb on - strand, within EX31_RS14215at 23.880 kb on - strand, within EX31_RS14215at 24.200 kb on - strand, within EX31_RS14215at 24.200 kb on - strand, within EX31_RS14215at 24.223 kb on + strand, within EX31_RS14215at 24.224 kb on - strand, within EX31_RS14215at 24.224 kb on - strand, within EX31_RS14215at 24.224 kb on - strand, within EX31_RS14215at 24.224 kb on - strand, within EX31_RS14215at 24.224 kb on - strand, within EX31_RS14215at 24.315 kb on + strand, within EX31_RS14215at 24.315 kb on + strand, within EX31_RS14215at 24.315 kb on + strand, within EX31_RS14215at 24.315 kb on + strand, within EX31_RS14215at 24.315 kb on + strand, within EX31_RS14215at 24.315 kb on + strand, within EX31_RS14215at 24.316 kb on - strand, within EX31_RS14215at 24.316 kb on - strand, within EX31_RS14215at 24.316 kb on - strand, within EX31_RS14215at 24.352 kb on + strandat 24.352 kb on + strandat 24.352 kb on + strandat 24.353 kb on - strandat 24.353 kb on - strandat 24.353 kb on - strandat 24.353 kb on - strandat 24.353 kb on - strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.358 kb on + strandat 24.359 kb on - strandat 24.359 kb on - strandat 24.359 kb on - strandat 24.359 kb on - strandat 24.369 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.384 kb on - strandat 24.384 kb on - strandat 24.384 kb on - strandat 24.384 kb on - strandat 24.384 kb on - strandat 24.393 kb on + strandat 24.394 kb on - strandat 24.394 kb on - strandat 24.451 kb on + strandat 24.451 kb on + strandat 24.452 kb on - strandat 24.488 kb on + strandat 24.488 kb on + strandat 24.488 kb on + strandat 24.489 kb on - strandat 24.489 kb on - strandat 24.490 kb on + strandat 24.490 kb on + strandat 24.490 kb on + strandat 24.490 kb on + strandat 24.490 kb on + strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.491 kb on - strandat 24.498 kb on - strandat 24.553 kb on - strandat 24.553 kb on - strandat 24.632 kb on + strandat 24.632 kb on + strandat 24.633 kb on - strandat 24.633 kb on - strandat 24.643 kb on + strandat 24.643 kb on + strandat 24.689 kb on + strandat 24.689 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.703 kb on + strandat 24.704 kb on - strandat 24.704 kb on - strandat 24.704 kb on - strandat 24.704 kb on - strandat 24.704 kb on - strandat 24.704 kb on - strandat 24.704 kb on - strandat 24.707 kb on + strandat 24.732 kb on + strandat 24.733 kb on - strandat 24.803 kb on + strandat 24.803 kb on + strandat 24.804 kb on - strandat 24.804 kb on - strandat 24.918 kb on + strand, within EX31_RS14220at 24.919 kb on - strand, within EX31_RS14220at 24.951 kb on + strand, within EX31_RS14220at 24.951 kb on + strand, within EX31_RS14220at 24.952 kb on - strand, within EX31_RS14220at 25.015 kb on + strand, within EX31_RS14220at 25.084 kb on + strandat 25.085 kb on - strandat 25.163 kb on + strandat 25.201 kb on + strandat 25.202 kb on - strandat 25.202 kb on - strandat 25.275 kb on + strandat 25.276 kb on - strandat 25.276 kb on - strandat 25.276 kb on - strandat 25.276 kb on - strandat 25.276 kb on - strandat 25.458 kb on - strand, within EX31_RS25365at 25.458 kb on - strand, within EX31_RS25365at 25.462 kb on - strand, within EX31_RS25365at 25.596 kb on - strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.650 kb on + strandat 25.651 kb on - strandat 25.651 kb on - strandat 25.651 kb on - strandat 25.651 kb on - strandat 25.651 kb on - strandat 25.651 kb on - strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.655 kb on + strandat 25.656 kb on - strandat 25.656 kb on - strandat 25.656 kb on - strandat 25.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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23,812 + EX31_RS14215 0.45 +0.4
23,812 + EX31_RS14215 0.45 +0.5
23,812 + EX31_RS14215 0.45 +1.6
23,812 + EX31_RS14215 0.45 +0.1
23,812 + EX31_RS14215 0.45 +1.1
23,813 - EX31_RS14215 0.45 +0.4
23,813 - EX31_RS14215 0.45 -0.4
23,813 - EX31_RS14215 0.45 +0.3
23,813 - EX31_RS14215 0.45 +0.2
23,813 - EX31_RS14215 0.45 +0.7
23,813 - EX31_RS14215 0.45 -0.3
23,813 - EX31_RS14215 0.45 +0.1
23,816 + EX31_RS14215 0.45 -0.3
23,816 + EX31_RS14215 0.45 -0.0
23,816 + EX31_RS14215 0.45 +0.2
23,816 + EX31_RS14215 0.45 +0.3
23,816 + EX31_RS14215 0.45 -0.0
23,816 + EX31_RS14215 0.45 +0.9
23,816 + EX31_RS14215 0.45 -1.2
23,817 - EX31_RS14215 0.45 +2.9
23,817 - EX31_RS14215 0.45 -0.0
23,817 - EX31_RS14215 0.45 -0.8
23,856 + EX31_RS14215 0.49 -0.4
23,857 - EX31_RS14215 0.49 +0.3
23,857 - EX31_RS14215 0.49 +0.7
23,857 - EX31_RS14215 0.49 +0.3
23,857 - EX31_RS14215 0.49 +1.0
23,857 - EX31_RS14215 0.49 -0.2
23,860 + EX31_RS14215 0.49 -1.2
23,860 + EX31_RS14215 0.49 +0.4
23,860 + EX31_RS14215 0.49 +1.1
23,860 + EX31_RS14215 0.49 -0.2
23,861 - EX31_RS14215 0.49 +0.4
23,861 - EX31_RS14215 0.49 +0.3
23,861 - EX31_RS14215 0.49 +1.2
23,861 - EX31_RS14215 0.49 -0.6
23,861 - EX31_RS14215 0.49 +0.3
23,861 - EX31_RS14215 0.49 +1.6
23,861 - EX31_RS14215 0.49 +0.6
23,861 - EX31_RS14215 0.49 +0.7
23,861 - EX31_RS14215 0.49 -0.4
23,861 - EX31_RS14215 0.49 -1.4
23,863 + EX31_RS14215 0.49 +0.6
23,863 + EX31_RS14215 0.49 +1.1
23,863 + EX31_RS14215 0.49 +0.2
23,863 + EX31_RS14215 0.49 -1.7
23,863 + EX31_RS14215 0.49 +0.2
23,863 + EX31_RS14215 0.49 +1.2
23,864 - EX31_RS14215 0.49 +0.4
23,864 - EX31_RS14215 0.49 -0.1
23,864 - EX31_RS14215 0.49 +0.6
23,864 - EX31_RS14215 0.49 +0.4
23,864 - EX31_RS14215 0.49 -0.8
23,864 - EX31_RS14215 0.49 +1.3
23,864 - EX31_RS14215 0.49 -1.1
23,864 - EX31_RS14215 0.49 +0.9
23,864 - EX31_RS14215 0.49 -0.3
23,864 - EX31_RS14215 0.49 +0.7
23,879 + EX31_RS14215 0.51 +0.6
23,880 - EX31_RS14215 0.51 -0.6
23,880 - EX31_RS14215 0.51 -1.1
24,200 - EX31_RS14215 0.78 -0.8
24,200 - EX31_RS14215 0.78 -1.0
24,223 + EX31_RS14215 0.80 -0.2
24,224 - EX31_RS14215 0.80 -0.2
24,224 - EX31_RS14215 0.80 +1.6
24,224 - EX31_RS14215 0.80 -0.3
24,224 - EX31_RS14215 0.80 -1.0
24,224 - EX31_RS14215 0.80 +1.2
24,315 + EX31_RS14215 0.88 +0.9
24,315 + EX31_RS14215 0.88 -1.1
24,315 + EX31_RS14215 0.88 -0.3
24,315 + EX31_RS14215 0.88 +1.2
24,315 + EX31_RS14215 0.88 +0.5
24,315 + EX31_RS14215 0.88 -0.3
24,316 - EX31_RS14215 0.88 +1.1
24,316 - EX31_RS14215 0.88 +1.4
24,316 - EX31_RS14215 0.88 +0.7
24,352 + -1.0
24,352 + -1.5
24,352 + +0.7
24,353 - +1.2
24,353 - +1.2
24,353 - +0.4
24,353 - -0.2
24,353 - +0.2
24,354 + +1.3
24,354 + -0.4
24,354 + -0.3
24,354 + +0.1
24,354 + -0.0
24,354 + -0.1
24,355 - +1.2
24,355 - +0.3
24,355 - -0.1
24,355 - -2.4
24,355 - +0.7
24,358 + +1.3
24,359 - -1.5
24,359 - +1.6
24,359 - -0.2
24,359 - -0.6
24,369 + -0.9
24,383 + +1.6
24,383 + +1.0
24,383 + +1.9
24,383 + -0.1
24,383 + -0.2
24,383 + +1.2
24,383 + +0.3
24,384 - +1.8
24,384 - -1.9
24,384 - -0.2
24,384 - +0.1
24,384 - +0.6
24,393 + +1.6
24,394 - +0.7
24,394 - +1.3
24,451 + +0.3
24,451 + -0.1
24,452 - +1.1
24,488 + +0.0
24,488 + +1.4
24,488 + +0.2
24,489 - +0.7
24,489 - +2.0
24,490 + -0.1
24,490 + +0.8
24,490 + -0.0
24,490 + -0.2
24,490 + +1.6
24,491 - +1.0
24,491 - +0.7
24,491 - +0.3
24,491 - +0.9
24,491 - -0.3
24,491 - +0.5
24,491 - +1.6
24,491 - +0.1
24,491 - +0.5
24,491 - +0.0
24,498 - +0.9
24,553 - -0.2
24,553 - -1.3
24,632 + +0.6
24,632 + -0.5
24,633 - -1.2
24,633 - +1.1
24,643 + +0.2
24,643 + +1.6
24,689 + +0.0
24,689 + -0.6
24,703 + +0.2
24,703 + +0.4
24,703 + -0.4
24,703 + -0.0
24,703 + -1.0
24,703 + -0.2
24,703 + -0.0
24,703 + +0.7
24,703 + +0.2
24,703 + +0.5
24,704 - -0.8
24,704 - -0.6
24,704 - -1.1
24,704 - +0.6
24,704 - +1.6
24,704 - -1.4
24,704 - -0.4
24,707 + +0.0
24,732 + -1.4
24,733 - +1.2
24,803 + +0.6
24,803 + -0.4
24,804 - +0.6
24,804 - -0.4
24,918 + EX31_RS14220 0.43 -2.0
24,919 - EX31_RS14220 0.43 -1.0
24,951 + EX31_RS14220 0.53 -2.2
24,951 + EX31_RS14220 0.53 +0.6
24,952 - EX31_RS14220 0.53 -1.2
25,015 + EX31_RS14220 0.73 -0.8
25,084 + -0.2
25,085 - -2.7
25,163 + +0.7
25,201 + +1.4
25,202 - -0.6
25,202 - -0.5
25,275 + +1.1
25,276 - -0.3
25,276 - -0.3
25,276 - +0.3
25,276 - +0.4
25,276 - -2.4
25,458 - EX31_RS25365 0.86 +1.6
25,458 - EX31_RS25365 0.86 +0.4
25,462 - EX31_RS25365 0.88 +1.0
25,596 - +0.6
25,650 + +1.5
25,650 + -0.2
25,650 + +0.2
25,650 + +0.8
25,650 + -0.2
25,650 + +0.8
25,650 + +0.1
25,650 + +1.1
25,650 + -0.2
25,650 + +0.2
25,651 - +0.2
25,651 - +0.2
25,651 - -0.6
25,651 - +1.4
25,651 - +0.0
25,651 - -0.1
25,655 + -0.4
25,655 + +0.4
25,655 + +1.3
25,655 + +0.5
25,655 + +0.2
25,655 + +1.2
25,655 + -0.3
25,655 + +1.6
25,655 + -0.3
25,655 + +0.7
25,655 + +0.1
25,655 + +0.3
25,655 + +0.3
25,656 - +0.6
25,656 - -1.0
25,656 - +1.6
25,673 + +0.1

Or see this region's nucleotide sequence