Strain Fitness in Rahnella sp. WP5 around EX31_RS14165

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
7,782	-		EX31_RS14155	0.72	+0.4
7,817	-		EX31_RS14155	0.82	-0.2
7,817	-		EX31_RS14155	0.82	-0.4
7,817	-		EX31_RS14155	0.82	+0.4
7,890	-				+1.0
7,890	-				+0.3
7,890	-				-0.0
7,890	-				-2.3
7,890	-				+0.4
7,901	+				+0.8
7,902	-				+0.1
7,902	-				-0.0
7,902	-				+0.0
7,902	-				+0.3
7,902	-				-1.8
7,903	-				-0.0
7,904	+				-0.5
7,904	+				+1.1
7,905	-				+0.5
7,905	-				+0.6
7,905	-				+0.5
7,905	-				-0.1
7,905	-				+1.7
7,905	-				+0.3
7,946	-		EX31_RS14160	0.13	-0.4
7,952	-		EX31_RS14160	0.14	-0.4
7,952	-		EX31_RS14160	0.14	+1.6
7,954	+		EX31_RS14160	0.14	+0.1
7,954	+		EX31_RS14160	0.14	-0.1
7,955	-		EX31_RS14160	0.14	+1.0
7,955	-		EX31_RS14160	0.14	-0.1
7,955	-		EX31_RS14160	0.14	+0.4
8,021	+		EX31_RS14160	0.24	-2.2
8,090	+		EX31_RS14160	0.34	+0.2
8,091	-		EX31_RS14160	0.34	+1.6
8,091	-		EX31_RS14160	0.34	+1.6
8,106	-		EX31_RS14160	0.37	+1.6
8,125	+		EX31_RS14160	0.39	-0.8
8,125	+		EX31_RS14160	0.39	+3.6
8,125	+		EX31_RS14160	0.39	+0.6
8,126	-		EX31_RS14160	0.40	-1.0
8,145	-		EX31_RS14160	0.42	-0.4
8,208	+		EX31_RS14160	0.52	-0.6
8,208	+		EX31_RS14160	0.52	+0.6
8,208	+		EX31_RS14160	0.52	+0.2
8,209	-		EX31_RS14160	0.52	+2.3
8,209	-		EX31_RS14160	0.52	+0.2
8,392	+		EX31_RS14160	0.79	-1.0
8,393	-		EX31_RS14160	0.79	+0.6
8,457	-		EX31_RS14160	0.88	+0.6
8,468	+		EX31_RS14160	0.90	+0.6
8,468	+		EX31_RS14160	0.90	+0.8
8,468	+		EX31_RS14160	0.90	-0.0
8,468	+		EX31_RS14160	0.90	-1.3
8,468	+		EX31_RS14160	0.90	+2.6
8,469	-		EX31_RS14160	0.90	+0.9
8,469	-		EX31_RS14160	0.90	+0.9
8,469	-		EX31_RS14160	0.90	-0.0
8,530	-				-0.4
8,552	+				+1.6
8,553	-				+1.1
8,555	+				-0.6
8,555	+				+1.2
8,555	+				-0.4
8,555	+				-0.2
8,556	-				+0.7
8,556	-				-0.8
8,593	+				+0.2
8,593	+				+0.3
8,593	+				+0.4
8,593	+				+0.9
8,594	-				+0.0
8,594	-				-0.4
8,594	-				-0.2
8,595	+				+1.1
8,595	+				+1.8
8,596	-				+0.8
8,596	-				+1.5
8,596	-				+1.0
8,626	+				+0.7
8,626	+				-1.0
8,626	+				+0.7
8,626	+				+0.3
8,626	+				+0.9
8,626	+				-0.1
8,626	+				+0.9
8,627	-				+0.3
8,627	-				+1.3
8,627	-				-0.0
8,627	-				-0.3
8,627	-				+2.0
8,627	-				-0.4
8,627	-				+1.2
8,627	-				-2.1
8,627	-				+0.0
8,627	-				+0.6
8,636	+				+2.6
8,636	+				+1.3
8,637	-				+0.1
8,637	-				-0.0
8,637	-				+1.6
8,637	-				+1.6
8,637	-				+0.6
8,637	-				-0.4
8,637	-				-1.8
8,662	+				+0.4
8,662	+				+1.4
8,668	+				+1.0
8,669	-				+1.3
8,691	-				+0.9
8,694	+				+0.8
8,694	+				-0.1
8,694	+				-0.2
8,694	+				-1.8
8,694	+				+0.2
8,694	+				+0.6
8,695	-				+0.2
8,695	-				+0.4
8,695	-				-0.8
8,695	-				-0.4
8,695	-				-0.2
8,700	+				+0.6
8,700	+				+0.0
8,700	+				+0.9
8,701	-				-0.2
8,703	+				-0.3
8,703	+				-0.1
8,703	+				-0.2
8,704	-				-1.6
8,704	-				-1.2
8,704	-				-1.3
8,704	-				-1.3
8,704	-				-2.5
8,704	-				-1.4
8,737	+				-0.1
8,861	+				-1.2
8,861	+				-0.5
8,862	-				-3.2
8,862	-				-2.8
8,862	-				-3.1
8,863	+				-1.9
8,863	+				-2.4
8,864	-				-1.9
8,884	+				-0.0
8,884	+				-2.2
8,884	+				-0.0
8,885	-				-2.6
8,885	-				-1.6
8,885	-				+1.6
8,885	-				-1.2
8,916	+		EX31_RS14165	0.12	-2.0
8,963	+		EX31_RS14165	0.15	-0.8
8,963	+		EX31_RS14165	0.15	-2.4
8,964	-		EX31_RS14165	0.15	-3.6
8,964	-		EX31_RS14165	0.15	-3.0
8,971	+		EX31_RS14165	0.16	-0.0
8,971	+		EX31_RS14165	0.16	-1.9
8,972	-		EX31_RS14165	0.16	-0.8
8,983	+		EX31_RS14165	0.17	+0.2
8,983	+		EX31_RS14165	0.17	+0.2
8,984	-		EX31_RS14165	0.17	-1.0
8,984	-		EX31_RS14165	0.17	-0.4
9,028	+		EX31_RS14165	0.20	-1.6
9,031	+		EX31_RS14165	0.20	-2.6
9,032	-		EX31_RS14165	0.20	-1.2
9,032	-		EX31_RS14165	0.20	-2.5
9,032	-		EX31_RS14165	0.20	-1.6
9,046	+		EX31_RS14165	0.21	-0.0
9,046	+		EX31_RS14165	0.21	-0.4
9,046	+		EX31_RS14165	0.21	-0.8
9,047	-		EX31_RS14165	0.21	-0.9
9,047	-		EX31_RS14165	0.21	-2.0
9,062	+		EX31_RS14165	0.22	-3.3
9,142	+		EX31_RS14165	0.28	-0.8
9,161	-		EX31_RS14165	0.29	-1.8
9,169	+		EX31_RS14165	0.30	-1.3
9,169	+		EX31_RS14165	0.30	-0.8
9,239	+		EX31_RS14165	0.35	-0.9
9,239	+		EX31_RS14165	0.35	-2.4
9,240	-		EX31_RS14165	0.35	-2.1
9,289	+		EX31_RS14165	0.38	-1.0
9,290	-		EX31_RS14165	0.39	-3.0
9,320	+		EX31_RS14165	0.41	-2.2
9,360	+		EX31_RS14165	0.44	-0.4
9,360	+		EX31_RS14165	0.44	-4.3
9,361	-		EX31_RS14165	0.44	-3.3
9,361	-		EX31_RS14165	0.44	-3.2
9,361	-		EX31_RS14165	0.44	-0.4
9,361	-		EX31_RS14165	0.44	-2.3
9,437	-		EX31_RS14165	0.49	-1.6
9,437	-		EX31_RS14165	0.49	-1.4
9,511	+		EX31_RS14165	0.54	-3.2
9,511	+		EX31_RS14165	0.54	-1.2
9,511	+		EX31_RS14165	0.54	-0.3
9,511	+		EX31_RS14165	0.54	-3.1
9,512	-		EX31_RS14165	0.54	-1.6
9,512	-		EX31_RS14165	0.54	-3.1
9,548	+		EX31_RS14165	0.57	-0.4
9,548	+		EX31_RS14165	0.57	-0.4
9,549	-		EX31_RS14165	0.57	+1.0
9,549	-		EX31_RS14165	0.57	-0.8
9,568	+		EX31_RS14165	0.58	-2.0
9,568	+		EX31_RS14165	0.58	-1.8
9,568	+		EX31_RS14165	0.58	-1.6
9,568	+		EX31_RS14165	0.58	-1.7
9,569	-		EX31_RS14165	0.58	-1.7
9,569	-		EX31_RS14165	0.58	-0.4
9,644	+		EX31_RS14165	0.64	-2.7
9,644	+		EX31_RS14165	0.64	-1.0
9,644	+		EX31_RS14165	0.64	-2.1
9,644	+		EX31_RS14165	0.64	-2.0
9,645	-		EX31_RS14165	0.64	-1.2
9,645	-		EX31_RS14165	0.64	-1.5
9,645	-		EX31_RS14165	0.64	-1.6
9,645	-		EX31_RS14165	0.64	-0.4
9,645	-		EX31_RS14165	0.64	-1.2
9,664	+		EX31_RS14165	0.65	-2.4
9,664	+		EX31_RS14165	0.65	-0.1
9,664	+		EX31_RS14165	0.65	-2.0
9,664	+		EX31_RS14165	0.65	-0.6
9,664	+		EX31_RS14165	0.65	-2.4
9,664	+		EX31_RS14165	0.65	-1.8
9,664	+		EX31_RS14165	0.65	-2.1
9,664	+		EX31_RS14165	0.65	-1.6
9,665	-		EX31_RS14165	0.65	-1.8
9,665	-		EX31_RS14165	0.65	-1.0
9,665	-		EX31_RS14165	0.65	-0.6
9,665	-		EX31_RS14165	0.65	-1.4
9,665	-		EX31_RS14165	0.65	-1.1
9,665	-		EX31_RS14165	0.65	+0.1
9,665	-		EX31_RS14165	0.65	-1.2
9,665	-		EX31_RS14165	0.65	-3.5
9,669	-		EX31_RS14165	0.66	-2.0
9,669	-		EX31_RS14165	0.66	-2.3
9,730	+		EX31_RS14165	0.70	-1.6
9,776	-		EX31_RS14165	0.73	-0.5
9,777	+		EX31_RS14165	0.73	-2.6
9,778	-		EX31_RS14165	0.73	-2.2
9,778	-		EX31_RS14165	0.73	-1.3
9,778	-		EX31_RS14165	0.73	-1.4
9,797	-		EX31_RS14165	0.75	-1.4
9,797	-		EX31_RS14165	0.75	-2.0
9,797	-		EX31_RS14165	0.75	-2.3
9,797	-		EX31_RS14165	0.75	-1.0
9,800	+		EX31_RS14165	0.75	-3.0
9,800	+		EX31_RS14165	0.75	-3.4
9,800	+		EX31_RS14165	0.75	-0.0
9,801	-		EX31_RS14165	0.75	-2.3
9,801	-		EX31_RS14165	0.75	-2.4
9,801	-		EX31_RS14165	0.75	-2.8
9,801	-		EX31_RS14165	0.75	-3.1
9,801	-		EX31_RS14165	0.75	-1.6
9,801	-		EX31_RS14165	0.75	-0.8
9,801	-		EX31_RS14165	0.75	-2.4
9,866	+		EX31_RS14165	0.80	-3.1
9,889	+		EX31_RS14165	0.81	-2.2
9,890	-		EX31_RS14165	0.81	-1.2
9,890	-		EX31_RS14165	0.81	-1.3
10,009	+		EX31_RS14165	0.90	-1.8
10,054	+				-1.8
10,054	+				-0.0
10,054	+				+0.5
10,054	+				-1.8
10,054	+				-1.6
10,054	+				-2.2
10,055	-				-0.4
10,055	-				-2.3
10,055	-				-2.2
10,055	-				-2.6
10,055	-				-3.2
10,055	-				-0.6
10,057	+				-2.1
10,057	+				-1.9
10,064	+				-1.9
10,075	+				-3.3
10,075	+				-0.8
10,076	-				-1.5
10,076	-				-0.3
10,088	+				-1.6
10,088	+				-0.8
10,089	-				-3.2
10,148	+				-0.0
10,149	-				-1.1
10,170	+				-0.9
10,170	+				+1.3
10,170	+				-0.2
10,170	+				-1.5
10,170	+				+0.3
10,170	+				+0.6
10,170	+				-0.2
10,170	+				-0.8
10,170	+				-1.0
10,170	+				+0.2
10,170	+				+0.0
10,170	+				+2.3
10,170	+				-0.1
10,171	-				+1.3
10,171	-				+0.6
10,171	-				+0.2
10,171	-				+1.4
10,171	-				-1.1
10,171	-				-0.3
10,171	-				-0.1
10,242	+		EX31_RS14170	0.12	+0.3
10,242	+		EX31_RS14170	0.12	-0.5
10,242	+		EX31_RS14170	0.12	+1.0
10,242	+		EX31_RS14170	0.12	+1.1
10,243	-		EX31_RS14170	0.12	+0.8
10,243	-		EX31_RS14170	0.12	-0.9
10,244	+		EX31_RS14170	0.12	+1.2
10,244	+		EX31_RS14170	0.12	-1.0
10,245	-		EX31_RS14170	0.12	-0.3
10,245	-		EX31_RS14170	0.12	+1.2
10,245	-		EX31_RS14170	0.12	+0.4
10,245	-		EX31_RS14170	0.12	+0.6
10,245	-		EX31_RS14170	0.12	+0.4
10,245	-		EX31_RS14170	0.12	+0.4
10,245	-		EX31_RS14170	0.12	+0.7
10,245	-		EX31_RS14170	0.12	+0.2
10,245	-		EX31_RS14170	0.12	+0.9
10,245	-		EX31_RS14170	0.12	-1.3
10,245	-		EX31_RS14170	0.12	-1.1
10,245	-		EX31_RS14170	0.12	-0.1
10,290	+		EX31_RS14170	0.17	+1.5
10,290	+		EX31_RS14170	0.17	+0.9
10,291	-		EX31_RS14170	0.17	-0.2
10,345	+		EX31_RS14170	0.23	-0.6
10,345	+		EX31_RS14170	0.23	+0.8
10,345	+		EX31_RS14170	0.23	+1.9
10,346	-		EX31_RS14170	0.23	-0.9
10,346	-		EX31_RS14170	0.23	+0.8
10,369	+		EX31_RS14170	0.26	-0.6
10,369	+		EX31_RS14170	0.26	-2.1
10,370	-		EX31_RS14170	0.26	+0.4
10,370	-		EX31_RS14170	0.26	+0.2
10,408	+		EX31_RS14170	0.30	-1.4
10,548	+		EX31_RS14170	0.45	-1.6
10,548	+		EX31_RS14170	0.45	-0.3
10,548	+		EX31_RS14170	0.45	-0.4
10,549	-		EX31_RS14170	0.45	-0.2
10,549	-		EX31_RS14170	0.45	+0.8
10,549	-		EX31_RS14170	0.45	+0.2
10,592	-		EX31_RS14170	0.50	-0.4
10,662	-		EX31_RS14170	0.57	+0.4
10,689	+		EX31_RS14170	0.60	+0.6
10,689	+		EX31_RS14170	0.60	+1.3
10,689	+		EX31_RS14170	0.60	+2.4
10,689	+		EX31_RS14170	0.60	-0.3
10,690	-		EX31_RS14170	0.60	+0.4
10,690	-		EX31_RS14170	0.60	+1.1
10,690	-		EX31_RS14170	0.60	+0.3
10,746	+		EX31_RS14170	0.66	+0.8
10,747	-		EX31_RS14170	0.66	+0.8
10,747	-		EX31_RS14170	0.66	+0.3
10,747	-		EX31_RS14170	0.66	+0.4
10,842	-		EX31_RS14170	0.77	+0.6
10,842	-		EX31_RS14170	0.77	+0.8
10,842	-		EX31_RS14170	0.77	-0.1
10,842	-		EX31_RS14170	0.77	+0.9
10,842	-		EX31_RS14170	0.77	+0.6
10,886	-		EX31_RS14170	0.81	+0.4
10,921	+		EX31_RS14170	0.85	+1.3
10,921	+		EX31_RS14170	0.85	-2.6
10,921	+		EX31_RS14170	0.85	+0.9
10,922	-		EX31_RS14170	0.85	-0.7
10,922	-		EX31_RS14170	0.85	-1.6
10,962	-		EX31_RS14170	0.90	+1.2
11,034	+				+0.1
11,035	-				+0.6
11,035	-				+0.3
11,035	-				-1.2
11,035	-				+0.3
11,039	+				+0.6
11,039	+				+0.9
11,039	+				+0.9
11,040	-				-0.1
11,040	-				+0.6
11,040	-				+0.5
11,040	-				-0.4
11,040	-				+1.4
11,073	-				+1.1
11,101	-				+0.5
11,101	-				-2.5
11,104	+				+0.6
11,104	+				-1.2
11,104	+				+1.0
11,124	-				-0.1
11,125	+				+0.4
11,129	+				-1.2
11,129	+				-1.2
11,130	-				+0.5
11,130	-				-0.3
11,139	+				-0.2
11,148	+				-0.2
11,149	-				-1.2