Strain Fitness in Rahnella sp. WP5 around EX31_RS13945

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13940 and EX31_RS13945 are separated by 129 nucleotidesEX31_RS13945 and EX31_RS13950 are separated by 349 nucleotides EX31_RS13940: EX31_RS13940 - kinase/pyrophosphorylase, at 51,356 to 52,177 _RS13940 EX31_RS13945: EX31_RS13945 - 3-deoxy-7-phosphoheptulonate synthase, at 52,307 to 53,353 _RS13945 EX31_RS13950: EX31_RS13950 - hemin-degrading factor, at 53,703 to 54,740 _RS13950 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.307 kb on + strandat 51.308 kb on - strandat 51.308 kb on - strandat 51.308 kb on - strandat 51.326 kb on - strandat 51.554 kb on + strand, within EX31_RS13940at 51.715 kb on + strand, within EX31_RS13940at 51.715 kb on + strand, within EX31_RS13940at 51.715 kb on + strand, within EX31_RS13940at 51.719 kb on + strand, within EX31_RS13940at 51.720 kb on - strand, within EX31_RS13940at 51.720 kb on - strand, within EX31_RS13940at 51.858 kb on + strand, within EX31_RS13940at 51.859 kb on - strand, within EX31_RS13940at 51.859 kb on - strand, within EX31_RS13940at 51.884 kb on + strand, within EX31_RS13940at 51.949 kb on + strand, within EX31_RS13940at 51.949 kb on + strand, within EX31_RS13940at 51.950 kb on - strand, within EX31_RS13940at 51.950 kb on - strand, within EX31_RS13940at 51.954 kb on + strand, within EX31_RS13940at 51.954 kb on + strand, within EX31_RS13940at 51.955 kb on - strand, within EX31_RS13940at 51.955 kb on - strand, within EX31_RS13940at 52.022 kb on + strand, within EX31_RS13940at 52.185 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.194 kb on - strandat 52.194 kb on - strandat 52.202 kb on + strandat 52.354 kb on + strandat 52.354 kb on + strandat 52.423 kb on + strand, within EX31_RS13945at 52.424 kb on - strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.501 kb on - strand, within EX31_RS13945at 52.501 kb on - strand, within EX31_RS13945at 52.579 kb on + strand, within EX31_RS13945at 52.579 kb on + strand, within EX31_RS13945at 52.580 kb on - strand, within EX31_RS13945at 52.580 kb on - strand, within EX31_RS13945at 52.580 kb on - strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.600 kb on + strand, within EX31_RS13945at 52.600 kb on + strand, within EX31_RS13945at 52.600 kb on + strand, within EX31_RS13945at 52.669 kb on + strand, within EX31_RS13945at 52.684 kb on + strand, within EX31_RS13945at 52.684 kb on + strand, within EX31_RS13945at 52.685 kb on - strand, within EX31_RS13945at 52.685 kb on - strand, within EX31_RS13945at 52.689 kb on + strand, within EX31_RS13945at 52.689 kb on + strand, within EX31_RS13945at 52.689 kb on + strand, within EX31_RS13945at 52.693 kb on - strand, within EX31_RS13945at 52.710 kb on + strand, within EX31_RS13945at 52.710 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.758 kb on - strand, within EX31_RS13945at 52.758 kb on - strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.964 kb on + strand, within EX31_RS13945at 52.965 kb on - strand, within EX31_RS13945at 53.024 kb on + strand, within EX31_RS13945at 53.145 kb on + strand, within EX31_RS13945at 53.313 kb on + strandat 53.313 kb on + strandat 53.313 kb on + strandat 53.313 kb on + strandat 53.427 kb on + strandat 53.508 kb on + strandat 53.508 kb on + strandat 53.509 kb on - strandat 53.509 kb on - strandat 53.602 kb on + strandat 53.683 kb on + strandat 53.727 kb on + strandat 53.728 kb on - strandat 53.728 kb on - strandat 53.728 kb on - strandat 53.731 kb on + strandat 53.732 kb on - strandat 53.760 kb on + strandat 53.760 kb on + strandat 53.761 kb on - strandat 53.761 kb on - strandat 53.816 kb on - strand, within EX31_RS13950at 54.120 kb on + strand, within EX31_RS13950at 54.120 kb on + strand, within EX31_RS13950at 54.120 kb on + strand, within EX31_RS13950at 54.121 kb on - strand, within EX31_RS13950at 54.121 kb on - strand, within EX31_RS13950at 54.121 kb on - strand, within EX31_RS13950at 54.122 kb on + strand, within EX31_RS13950at 54.122 kb on + strand, within EX31_RS13950at 54.341 kb on + strand, within EX31_RS13950

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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51,307 + +0.8
51,308 - +0.3
51,308 - +1.3
51,308 - -1.9
51,326 - +0.2
51,554 + EX31_RS13940 0.24 -0.5
51,715 + EX31_RS13940 0.44 -2.1
51,715 + EX31_RS13940 0.44 +0.7
51,715 + EX31_RS13940 0.44 -0.0
51,719 + EX31_RS13940 0.44 +2.1
51,720 - EX31_RS13940 0.44 -1.6
51,720 - EX31_RS13940 0.44 +0.7
51,858 + EX31_RS13940 0.61 -0.3
51,859 - EX31_RS13940 0.61 +0.9
51,859 - EX31_RS13940 0.61 -1.3
51,884 + EX31_RS13940 0.64 +1.0
51,949 + EX31_RS13940 0.72 +0.7
51,949 + EX31_RS13940 0.72 -0.5
51,950 - EX31_RS13940 0.72 -1.1
51,950 - EX31_RS13940 0.72 -1.2
51,954 + EX31_RS13940 0.73 +0.1
51,954 + EX31_RS13940 0.73 +0.5
51,955 - EX31_RS13940 0.73 +0.4
51,955 - EX31_RS13940 0.73 +0.2
52,022 + EX31_RS13940 0.81 +2.7
52,185 + +0.1
52,193 + -1.2
52,193 + +0.1
52,193 + -2.1
52,193 + +0.7
52,193 + -0.0
52,193 + -2.5
52,193 + -0.4
52,194 - +0.1
52,194 - -0.6
52,202 + -0.3
52,354 + -2.3
52,354 + -2.5
52,423 + EX31_RS13945 0.11 -1.9
52,424 - EX31_RS13945 0.11 -2.5
52,500 + EX31_RS13945 0.18 -1.3
52,500 + EX31_RS13945 0.18 -3.5
52,500 + EX31_RS13945 0.18 -1.3
52,500 + EX31_RS13945 0.18 -1.9
52,501 - EX31_RS13945 0.19 -3.3
52,501 - EX31_RS13945 0.19 -0.9
52,579 + EX31_RS13945 0.26 +0.7
52,579 + EX31_RS13945 0.26 -2.9
52,580 - EX31_RS13945 0.26 -2.1
52,580 - EX31_RS13945 0.26 +0.7
52,580 - EX31_RS13945 0.26 -2.5
52,583 + EX31_RS13945 0.26 -1.9
52,583 + EX31_RS13945 0.26 -1.1
52,583 + EX31_RS13945 0.26 +0.1
52,583 + EX31_RS13945 0.26 -0.9
52,583 + EX31_RS13945 0.26 -0.9
52,600 + EX31_RS13945 0.28 -2.3
52,600 + EX31_RS13945 0.28 -2.6
52,600 + EX31_RS13945 0.28 -1.3
52,669 + EX31_RS13945 0.35 -0.9
52,684 + EX31_RS13945 0.36 -0.3
52,684 + EX31_RS13945 0.36 -1.7
52,685 - EX31_RS13945 0.36 -0.9
52,685 - EX31_RS13945 0.36 -2.3
52,689 + EX31_RS13945 0.36 -2.3
52,689 + EX31_RS13945 0.36 -2.5
52,689 + EX31_RS13945 0.36 +0.7
52,693 - EX31_RS13945 0.37 -1.3
52,710 + EX31_RS13945 0.38 -3.1
52,710 + EX31_RS13945 0.38 -0.9
52,757 + EX31_RS13945 0.43 -1.9
52,757 + EX31_RS13945 0.43 -0.3
52,757 + EX31_RS13945 0.43 -0.3
52,757 + EX31_RS13945 0.43 +0.7
52,757 + EX31_RS13945 0.43 -1.9
52,757 + EX31_RS13945 0.43 -1.3
52,758 - EX31_RS13945 0.43 -0.5
52,758 - EX31_RS13945 0.43 -1.3
52,759 + EX31_RS13945 0.43 -0.3
52,759 + EX31_RS13945 0.43 -2.6
52,759 + EX31_RS13945 0.43 -1.9
52,759 + EX31_RS13945 0.43 -2.5
52,759 + EX31_RS13945 0.43 -3.2
52,759 + EX31_RS13945 0.43 -1.6
52,924 + EX31_RS13945 0.59 -2.7
52,924 + EX31_RS13945 0.59 -0.5
52,924 + EX31_RS13945 0.59 -2.6
52,924 + EX31_RS13945 0.59 -3.3
52,924 + EX31_RS13945 0.59 -1.6
52,924 + EX31_RS13945 0.59 -1.3
52,924 + EX31_RS13945 0.59 -0.3
52,925 - EX31_RS13945 0.59 -0.3
52,925 - EX31_RS13945 0.59 +0.7
52,925 - EX31_RS13945 0.59 -3.0
52,925 - EX31_RS13945 0.59 -1.3
52,925 - EX31_RS13945 0.59 -0.9
52,964 + EX31_RS13945 0.63 -1.9
52,965 - EX31_RS13945 0.63 -2.1
53,024 + EX31_RS13945 0.68 -1.6
53,145 + EX31_RS13945 0.80 -2.1
53,313 + -2.3
53,313 + -0.7
53,313 + -2.9
53,313 + -1.6
53,427 + +1.9
53,508 + -1.1
53,508 + -0.1
53,509 - -1.9
53,509 - -0.1
53,602 + -1.3
53,683 + +0.7
53,727 + -0.9
53,728 - +1.7
53,728 - +0.4
53,728 - -0.7
53,731 + -0.9
53,732 - +3.7
53,760 + +1.5
53,760 + +1.7
53,761 - +0.4
53,761 - +0.2
53,816 - EX31_RS13950 0.11 +1.6
54,120 + EX31_RS13950 0.40 +1.1
54,120 + EX31_RS13950 0.40 -0.3
54,120 + EX31_RS13950 0.40 -1.3
54,121 - EX31_RS13950 0.40 +0.4
54,121 - EX31_RS13950 0.40 -2.2
54,121 - EX31_RS13950 0.40 -0.8
54,122 + EX31_RS13950 0.40 +0.7
54,122 + EX31_RS13950 0.40 +1.7
54,341 + EX31_RS13950 0.61 -0.5

Or see this region's nucleotide sequence