Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13330 and EX31_RS13335 are separated by 75 nucleotides EX31_RS13335 and EX31_RS13340 are separated by 119 nucleotides EX31_RS13340 and EX31_RS13345 are separated by 489 nucleotides
EX31_RS13330: EX31_RS13330 - efflux transporter outer membrane subunit, at 98,555 to 99,958
_RS13330
EX31_RS13335: EX31_RS13335 - transcriptional regulator, at 100,034 to 100,288
_RS13335
EX31_RS13340: EX31_RS13340 - helix-turn-helix transcriptional regulator, at 100,408 to 100,656
_RS13340
EX31_RS13345: EX31_RS13345 - hypothetical protein, at 101,146 to 101,469
_RS13345
Position (kb) 100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 99.121 kb on - strand, within EX31_RS13330 at 99.182 kb on + strand, within EX31_RS13330 at 99.183 kb on - strand, within EX31_RS13330 at 99.263 kb on + strand, within EX31_RS13330 at 99.276 kb on + strand, within EX31_RS13330 at 99.277 kb on - strand, within EX31_RS13330 at 99.425 kb on - strand, within EX31_RS13330 at 99.425 kb on - strand, within EX31_RS13330 at 99.439 kb on + strand, within EX31_RS13330 at 99.439 kb on + strand, within EX31_RS13330 at 99.439 kb on + strand, within EX31_RS13330 at 99.440 kb on - strand, within EX31_RS13330 at 99.440 kb on - strand, within EX31_RS13330 at 99.440 kb on - strand, within EX31_RS13330 at 99.440 kb on - strand, within EX31_RS13330 at 99.440 kb on - strand, within EX31_RS13330 at 99.499 kb on + strand, within EX31_RS13330 at 99.499 kb on + strand, within EX31_RS13330 at 99.500 kb on - strand, within EX31_RS13330 at 99.541 kb on + strand, within EX31_RS13330 at 99.577 kb on + strand, within EX31_RS13330 at 99.577 kb on + strand, within EX31_RS13330 at 99.578 kb on - strand, within EX31_RS13330 at 99.578 kb on - strand, within EX31_RS13330 at 99.578 kb on - strand, within EX31_RS13330 at 99.578 kb on - strand, within EX31_RS13330 at 99.578 kb on - strand, within EX31_RS13330 at 99.671 kb on + strand, within EX31_RS13330 at 99.671 kb on + strand, within EX31_RS13330 at 99.671 kb on + strand, within EX31_RS13330 at 99.671 kb on + strand, within EX31_RS13330 at 99.671 kb on + strand, within EX31_RS13330 at 99.671 kb on + strand, within EX31_RS13330 at 99.672 kb on - strand, within EX31_RS13330 at 99.672 kb on - strand, within EX31_RS13330 at 99.672 kb on - strand, within EX31_RS13330 at 99.672 kb on - strand, within EX31_RS13330 at 99.734 kb on + strand, within EX31_RS13330 at 99.734 kb on + strand, within EX31_RS13330 at 99.734 kb on + strand, within EX31_RS13330 at 99.735 kb on - strand, within EX31_RS13330 at 99.788 kb on + strand, within EX31_RS13330 at 99.788 kb on + strand, within EX31_RS13330 at 99.789 kb on - strand, within EX31_RS13330 at 99.789 kb on - strand, within EX31_RS13330 at 99.789 kb on - strand, within EX31_RS13330 at 99.789 kb on - strand, within EX31_RS13330 at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.830 kb on + strand at 99.831 kb on - strand at 99.831 kb on - strand at 99.831 kb on - strand at 99.831 kb on - strand at 99.831 kb on - strand at 99.840 kb on + strand at 99.840 kb on + strand at 99.863 kb on + strand at 99.863 kb on + strand at 99.863 kb on + strand at 99.863 kb on + strand at 99.926 kb on + strand at 99.926 kb on + strand at 99.926 kb on + strand at 99.926 kb on + strand at 99.927 kb on - strand at 99.927 kb on - strand at 99.927 kb on - strand at 99.928 kb on + strand at 99.929 kb on - strand at 100.031 kb on + strand at 100.031 kb on + strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.032 kb on - strand at 100.055 kb on + strand at 100.055 kb on + strand at 100.056 kb on - strand at 100.056 kb on - strand at 100.077 kb on + strand, within EX31_RS13335 at 100.078 kb on - strand, within EX31_RS13335 at 100.268 kb on - strand at 100.306 kb on + strand at 100.322 kb on + strand at 100.326 kb on + strand at 100.327 kb on - strand at 100.327 kb on - strand at 100.327 kb on - strand at 100.361 kb on + strand at 100.400 kb on + strand at 100.401 kb on - strand at 100.401 kb on - strand at 100.420 kb on + strand at 100.420 kb on + strand at 100.421 kb on - strand at 100.421 kb on - strand at 100.421 kb on - strand at 100.451 kb on + strand, within EX31_RS13340 at 100.527 kb on + strand, within EX31_RS13340 at 100.527 kb on + strand, within EX31_RS13340 at 100.527 kb on + strand, within EX31_RS13340 at 100.527 kb on + strand, within EX31_RS13340 at 100.533 kb on + strand, within EX31_RS13340 at 100.595 kb on + strand, within EX31_RS13340 at 100.641 kb on + strand at 100.645 kb on - strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.665 kb on + strand at 100.674 kb on - strand at 100.729 kb on - strand at 100.747 kb on - strand at 100.759 kb on + strand at 100.760 kb on - strand at 100.760 kb on - strand at 100.760 kb on - strand at 100.760 kb on - strand at 100.766 kb on - strand at 100.802 kb on + strand at 100.802 kb on + strand at 100.803 kb on - strand at 100.803 kb on - strand at 100.803 kb on - strand at 100.862 kb on - strand at 100.874 kb on + strand at 100.875 kb on - strand at 100.875 kb on - strand at 100.879 kb on + strand at 100.879 kb on + strand at 100.879 kb on + strand at 100.880 kb on - strand at 100.880 kb on - strand at 100.907 kb on - strand at 100.912 kb on + strand at 100.912 kb on + strand at 100.912 kb on + strand at 100.912 kb on + strand at 100.912 kb on + strand at 100.913 kb on - strand at 100.913 kb on - strand at 100.913 kb on - strand at 100.913 kb on - strand at 100.954 kb on - strand at 100.954 kb on - strand at 100.987 kb on + strand at 100.988 kb on - strand at 100.988 kb on - strand at 100.997 kb on - strand at 101.022 kb on + strand at 101.022 kb on + strand at 101.086 kb on + strand at 101.087 kb on - strand at 101.147 kb on + strand at 101.148 kb on - strand at 101.236 kb on + strand, within EX31_RS13345 at 101.236 kb on + strand, within EX31_RS13345 at 101.237 kb on - strand, within EX31_RS13345 at 101.237 kb on - strand, within EX31_RS13345 at 101.240 kb on - strand, within EX31_RS13345 at 101.259 kb on + strand, within EX31_RS13345 at 101.260 kb on - strand, within EX31_RS13345 at 101.260 kb on - strand, within EX31_RS13345 at 101.260 kb on - strand, within EX31_RS13345 at 101.260 kb on - strand, within EX31_RS13345 at 101.260 kb on - strand, within EX31_RS13345 at 101.261 kb on + strand, within EX31_RS13345 at 101.261 kb on + strand, within EX31_RS13345 at 101.262 kb on - strand, within EX31_RS13345 at 101.262 kb on - strand, within EX31_RS13345
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 99,121 - EX31_RS13330 0.40 -0.4 99,182 + EX31_RS13330 0.45 -0.0 99,183 - EX31_RS13330 0.45 -1.0 99,263 + EX31_RS13330 0.50 -1.1 99,276 + EX31_RS13330 0.51 +0.3 99,277 - EX31_RS13330 0.51 -0.6 99,425 - EX31_RS13330 0.62 +1.0 99,425 - EX31_RS13330 0.62 +1.0 99,439 + EX31_RS13330 0.63 -0.8 99,439 + EX31_RS13330 0.63 +1.4 99,439 + EX31_RS13330 0.63 -0.4 99,440 - EX31_RS13330 0.63 +0.2 99,440 - EX31_RS13330 0.63 +1.6 99,440 - EX31_RS13330 0.63 +0.6 99,440 - EX31_RS13330 0.63 -0.6 99,440 - EX31_RS13330 0.63 +0.8 99,499 + EX31_RS13330 0.67 +1.9 99,499 + EX31_RS13330 0.67 -0.3 99,500 - EX31_RS13330 0.67 +0.2 99,541 + EX31_RS13330 0.70 +1.1 99,577 + EX31_RS13330 0.73 +0.4 99,577 + EX31_RS13330 0.73 +0.4 99,578 - EX31_RS13330 0.73 -0.4 99,578 - EX31_RS13330 0.73 +0.4 99,578 - EX31_RS13330 0.73 +0.6 99,578 - EX31_RS13330 0.73 +0.2 99,578 - EX31_RS13330 0.73 +0.7 99,671 + EX31_RS13330 0.79 -0.6 99,671 + EX31_RS13330 0.79 +0.5 99,671 + EX31_RS13330 0.79 -0.2 99,671 + EX31_RS13330 0.79 -1.1 99,671 + EX31_RS13330 0.79 -0.2 99,671 + EX31_RS13330 0.79 +0.7 99,672 - EX31_RS13330 0.80 +1.4 99,672 - EX31_RS13330 0.80 -0.4 99,672 - EX31_RS13330 0.80 +0.4 99,672 - EX31_RS13330 0.80 +0.8 99,734 + EX31_RS13330 0.84 +0.4 99,734 + EX31_RS13330 0.84 -2.4 99,734 + EX31_RS13330 0.84 +0.9 99,735 - EX31_RS13330 0.84 +0.2 99,788 + EX31_RS13330 0.88 +0.7 99,788 + EX31_RS13330 0.88 +2.2 99,789 - EX31_RS13330 0.88 +0.2 99,789 - EX31_RS13330 0.88 -0.0 99,789 - EX31_RS13330 0.88 +1.2 99,789 - EX31_RS13330 0.88 +0.6 99,830 + -0.5 99,830 + +1.8 99,830 + +0.2 99,830 + +1.1 99,830 + +1.0 99,830 + -1.2 99,830 + +0.4 99,830 + -2.6 99,830 + +2.0 99,831 - -0.3 99,831 - -0.0 99,831 - +0.8 99,831 - +1.4 99,831 - +0.7 99,840 + +0.1 99,840 + +0.2 99,863 + +1.0 99,863 + +0.6 99,863 + +1.5 99,863 + -0.0 99,926 + -0.7 99,926 + +0.1 99,926 + -1.5 99,926 + +0.1 99,927 - -0.4 99,927 - +0.8 99,927 - +0.9 99,928 + +0.4 99,929 - +1.4 100,031 + +1.5 100,031 + -0.8 100,032 - -0.4 100,032 - -0.1 100,032 - +0.3 100,032 - -0.2 100,032 - +1.0 100,032 - +0.3 100,032 - +3.2 100,032 - +0.0 100,032 - -0.4 100,032 - +0.6 100,055 + +0.8 100,055 + -1.4 100,056 - -0.1 100,056 - +0.2 100,077 + EX31_RS13335 0.17 -2.0 100,078 - EX31_RS13335 0.17 -1.8 100,268 - -0.2 100,306 + -0.4 100,322 + +0.6 100,326 + +1.4 100,327 - +0.4 100,327 - +0.6 100,327 - +0.2 100,361 + -0.1 100,400 + -0.5 100,401 - +0.4 100,401 - +0.2 100,420 + -2.3 100,420 + +0.5 100,421 - -0.3 100,421 - +1.4 100,421 - +0.8 100,451 + EX31_RS13340 0.17 +0.3 100,527 + EX31_RS13340 0.48 -0.1 100,527 + EX31_RS13340 0.48 +1.4 100,527 + EX31_RS13340 0.48 -0.0 100,527 + EX31_RS13340 0.48 +0.7 100,533 + EX31_RS13340 0.50 +0.6 100,595 + EX31_RS13340 0.75 +1.2 100,641 + -1.4 100,645 - +0.8 100,654 + -1.4 100,654 + +0.3 100,654 + -1.2 100,654 + +1.2 100,654 + +0.2 100,654 + -0.5 100,655 - +0.2 100,655 - +0.7 100,655 - +0.4 100,655 - -2.0 100,655 - -0.9 100,665 + +0.3 100,674 - +1.8 100,729 - +1.4 100,747 - -0.6 100,759 + -1.8 100,760 - +0.4 100,760 - +0.7 100,760 - -1.6 100,760 - -1.3 100,766 - +0.3 100,802 + +1.4 100,802 + +0.1 100,803 - -0.1 100,803 - -0.4 100,803 - -1.4 100,862 - -1.2 100,874 + +0.6 100,875 - +0.7 100,875 - -0.4 100,879 + -0.0 100,879 + +0.8 100,879 + -0.0 100,880 - +0.2 100,880 - +1.8 100,907 - -0.6 100,912 + +0.8 100,912 + -0.2 100,912 + +0.2 100,912 + +0.6 100,912 + -0.0 100,913 - +0.8 100,913 - -0.3 100,913 - +0.4 100,913 - -0.0 100,954 - +1.5 100,954 - -0.6 100,987 + -1.0 100,988 - +0.7 100,988 - +0.1 100,997 - -1.6 101,022 + -1.2 101,022 + -0.0 101,086 + +0.1 101,087 - +1.2 101,147 + +1.8 101,148 - +0.1 101,236 + EX31_RS13345 0.28 +0.8 101,236 + EX31_RS13345 0.28 +0.1 101,237 - EX31_RS13345 0.28 +1.2 101,237 - EX31_RS13345 0.28 +1.1 101,240 - EX31_RS13345 0.29 +0.0 101,259 + EX31_RS13345 0.35 -0.5 101,260 - EX31_RS13345 0.35 +1.4 101,260 - EX31_RS13345 0.35 -0.5 101,260 - EX31_RS13345 0.35 +0.4 101,260 - EX31_RS13345 0.35 +0.9 101,260 - EX31_RS13345 0.35 -0.6 101,261 + EX31_RS13345 0.35 +1.2 101,261 + EX31_RS13345 0.35 +1.8 101,262 - EX31_RS13345 0.36 +0.1 101,262 - EX31_RS13345 0.36 +0.1
Or see this region's nucleotide sequence