Strain Fitness in Rahnella sp. WP5 around EX31_RS12370

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12365 and EX31_RS12370 overlap by 4 nucleotidesEX31_RS12370 and EX31_RS12375 are separated by 219 nucleotides EX31_RS12365: EX31_RS12365 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 142,253 to 143,380 _RS12365 EX31_RS12370: EX31_RS12370 - KDGP aldolase family protein, at 143,377 to 144,117 _RS12370 EX31_RS12375: EX31_RS12375 - PRD domain-containing protein, at 144,337 to 146,253 _RS12375 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 142.389 kb on - strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.427 kb on + strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.428 kb on - strand, within EX31_RS12365at 142.598 kb on - strand, within EX31_RS12365at 142.656 kb on + strand, within EX31_RS12365at 142.656 kb on + strand, within EX31_RS12365at 142.656 kb on + strand, within EX31_RS12365at 142.657 kb on - strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on + strand, within EX31_RS12365at 142.733 kb on - strand, within EX31_RS12365at 142.734 kb on - strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.737 kb on + strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.738 kb on - strand, within EX31_RS12365at 142.807 kb on + strand, within EX31_RS12365at 142.808 kb on - strand, within EX31_RS12365at 142.808 kb on - strand, within EX31_RS12365at 142.808 kb on - strand, within EX31_RS12365at 142.808 kb on - strand, within EX31_RS12365at 142.859 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.886 kb on + strand, within EX31_RS12365at 142.887 kb on - strand, within EX31_RS12365at 142.887 kb on - strand, within EX31_RS12365at 142.887 kb on - strand, within EX31_RS12365at 142.946 kb on + strand, within EX31_RS12365at 142.946 kb on + strand, within EX31_RS12365at 142.946 kb on + strand, within EX31_RS12365at 142.947 kb on - strand, within EX31_RS12365at 142.959 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.042 kb on + strand, within EX31_RS12365at 143.043 kb on - strand, within EX31_RS12365at 143.043 kb on - strand, within EX31_RS12365at 143.043 kb on - strand, within EX31_RS12365at 143.350 kb on + strandat 143.455 kb on - strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.458 kb on + strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.459 kb on - strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.480 kb on + strand, within EX31_RS12370at 143.481 kb on - strand, within EX31_RS12370at 143.481 kb on - strand, within EX31_RS12370at 143.481 kb on - strand, within EX31_RS12370at 143.481 kb on - strand, within EX31_RS12370at 143.545 kb on + strand, within EX31_RS12370at 143.546 kb on - strand, within EX31_RS12370at 143.546 kb on - strand, within EX31_RS12370at 143.836 kb on - strand, within EX31_RS12370at 143.836 kb on - strand, within EX31_RS12370at 143.857 kb on + strand, within EX31_RS12370at 143.961 kb on - strand, within EX31_RS12370at 144.024 kb on + strand, within EX31_RS12370at 144.025 kb on - strand, within EX31_RS12370at 144.025 kb on - strand, within EX31_RS12370at 144.025 kb on - strand, within EX31_RS12370at 144.028 kb on + strand, within EX31_RS12370at 144.028 kb on + strand, within EX31_RS12370at 144.028 kb on + strand, within EX31_RS12370at 144.028 kb on + strand, within EX31_RS12370at 144.028 kb on + strand, within EX31_RS12370at 144.028 kb on + strand, within EX31_RS12370at 144.029 kb on - strand, within EX31_RS12370at 144.029 kb on - strand, within EX31_RS12370at 144.182 kb on + strandat 144.182 kb on + strandat 144.182 kb on + strandat 144.182 kb on + strandat 144.182 kb on + strandat 144.183 kb on - strandat 144.183 kb on - strandat 144.183 kb on - strandat 144.184 kb on + strandat 144.184 kb on + strandat 144.184 kb on + strandat 144.185 kb on - strandat 144.185 kb on - strandat 144.185 kb on - strandat 144.188 kb on + strandat 144.188 kb on + strandat 144.188 kb on + strandat 144.189 kb on - strandat 144.189 kb on - strandat 144.232 kb on - strandat 144.232 kb on - strandat 144.232 kb on - strandat 144.232 kb on - strandat 144.292 kb on + strandat 144.293 kb on - strandat 144.319 kb on + strandat 144.465 kb on + strandat 144.484 kb on + strandat 144.500 kb on + strandat 144.500 kb on + strandat 144.500 kb on + strandat 144.501 kb on - strandat 144.501 kb on - strandat 144.579 kb on + strand, within EX31_RS12375at 144.580 kb on - strand, within EX31_RS12375at 144.580 kb on - strand, within EX31_RS12375at 144.728 kb on + strand, within EX31_RS12375at 144.728 kb on + strand, within EX31_RS12375at 144.728 kb on + strand, within EX31_RS12375at 144.729 kb on - strand, within EX31_RS12375at 144.759 kb on + strand, within EX31_RS12375at 144.924 kb on + strand, within EX31_RS12375at 144.925 kb on - strand, within EX31_RS12375at 144.951 kb on + strand, within EX31_RS12375at 144.952 kb on - strand, within EX31_RS12375at 144.952 kb on - strand, within EX31_RS12375at 144.952 kb on - strand, within EX31_RS12375at 144.952 kb on - strand, within EX31_RS12375at 144.952 kb on - strand, within EX31_RS12375at 144.979 kb on + strand, within EX31_RS12375at 144.980 kb on - strand, within EX31_RS12375at 145.008 kb on + strand, within EX31_RS12375

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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142,389 - EX31_RS12365 0.12 -1.8
142,427 + EX31_RS12365 0.15 +0.0
142,427 + EX31_RS12365 0.15 -0.6
142,427 + EX31_RS12365 0.15 -0.7
142,427 + EX31_RS12365 0.15 +0.8
142,427 + EX31_RS12365 0.15 +1.5
142,427 + EX31_RS12365 0.15 +0.8
142,427 + EX31_RS12365 0.15 +0.2
142,427 + EX31_RS12365 0.15 +0.5
142,427 + EX31_RS12365 0.15 -0.1
142,427 + EX31_RS12365 0.15 +1.1
142,427 + EX31_RS12365 0.15 +0.1
142,427 + EX31_RS12365 0.15 +0.7
142,427 + EX31_RS12365 0.15 +0.2
142,427 + EX31_RS12365 0.15 +1.0
142,427 + EX31_RS12365 0.15 +0.2
142,427 + EX31_RS12365 0.15 +0.9
142,427 + EX31_RS12365 0.15 -0.2
142,427 + EX31_RS12365 0.15 +0.2
142,427 + EX31_RS12365 0.15 +0.4
142,427 + EX31_RS12365 0.15 +0.2
142,427 + EX31_RS12365 0.15 -0.4
142,428 - EX31_RS12365 0.16 -1.3
142,428 - EX31_RS12365 0.16 -1.5
142,428 - EX31_RS12365 0.16 +0.7
142,428 - EX31_RS12365 0.16 +0.7
142,428 - EX31_RS12365 0.16 +0.4
142,428 - EX31_RS12365 0.16 -0.4
142,428 - EX31_RS12365 0.16 +1.3
142,428 - EX31_RS12365 0.16 +0.4
142,428 - EX31_RS12365 0.16 -0.4
142,598 - EX31_RS12365 0.31 -0.4
142,656 + EX31_RS12365 0.36 +0.3
142,656 + EX31_RS12365 0.36 +0.7
142,656 + EX31_RS12365 0.36 +0.1
142,657 - EX31_RS12365 0.36 -1.5
142,733 + EX31_RS12365 0.43 -1.0
142,733 + EX31_RS12365 0.43 -1.0
142,733 + EX31_RS12365 0.43 -0.3
142,733 + EX31_RS12365 0.43 +0.6
142,733 + EX31_RS12365 0.43 -1.6
142,733 + EX31_RS12365 0.43 +0.7
142,733 + EX31_RS12365 0.43 +1.1
142,733 + EX31_RS12365 0.43 +0.5
142,733 + EX31_RS12365 0.43 -0.8
142,733 - EX31_RS12365 0.43 -0.3
142,734 - EX31_RS12365 0.43 -2.0
142,737 + EX31_RS12365 0.43 +0.2
142,737 + EX31_RS12365 0.43 +0.0
142,737 + EX31_RS12365 0.43 +0.3
142,737 + EX31_RS12365 0.43 -0.1
142,737 + EX31_RS12365 0.43 -1.3
142,737 + EX31_RS12365 0.43 +0.7
142,737 + EX31_RS12365 0.43 +0.6
142,737 + EX31_RS12365 0.43 +1.0
142,738 - EX31_RS12365 0.43 +0.0
142,738 - EX31_RS12365 0.43 +0.2
142,738 - EX31_RS12365 0.43 +1.2
142,738 - EX31_RS12365 0.43 +0.1
142,738 - EX31_RS12365 0.43 -1.0
142,738 - EX31_RS12365 0.43 +0.4
142,738 - EX31_RS12365 0.43 -0.3
142,807 + EX31_RS12365 0.49 +1.0
142,808 - EX31_RS12365 0.49 +1.2
142,808 - EX31_RS12365 0.49 +1.3
142,808 - EX31_RS12365 0.49 -0.1
142,808 - EX31_RS12365 0.49 +0.2
142,859 + EX31_RS12365 0.54 -1.2
142,886 + EX31_RS12365 0.56 +0.3
142,886 + EX31_RS12365 0.56 -1.0
142,886 + EX31_RS12365 0.56 -0.3
142,886 + EX31_RS12365 0.56 +0.3
142,886 + EX31_RS12365 0.56 -1.1
142,886 + EX31_RS12365 0.56 +0.6
142,886 + EX31_RS12365 0.56 -0.3
142,887 - EX31_RS12365 0.56 +1.8
142,887 - EX31_RS12365 0.56 +1.6
142,887 - EX31_RS12365 0.56 +0.1
142,946 + EX31_RS12365 0.61 +0.4
142,946 + EX31_RS12365 0.61 +0.5
142,946 + EX31_RS12365 0.61 +0.0
142,947 - EX31_RS12365 0.62 -0.2
142,959 + EX31_RS12365 0.63 -0.1
143,042 + EX31_RS12365 0.70 +0.3
143,042 + EX31_RS12365 0.70 +0.5
143,042 + EX31_RS12365 0.70 +1.2
143,042 + EX31_RS12365 0.70 -0.1
143,042 + EX31_RS12365 0.70 +0.9
143,042 + EX31_RS12365 0.70 +0.4
143,042 + EX31_RS12365 0.70 -0.2
143,042 + EX31_RS12365 0.70 +0.6
143,043 - EX31_RS12365 0.70 +1.3
143,043 - EX31_RS12365 0.70 +1.7
143,043 - EX31_RS12365 0.70 +1.3
143,350 + +0.3
143,455 - EX31_RS12370 0.11 -0.3
143,458 + EX31_RS12370 0.11 +0.0
143,458 + EX31_RS12370 0.11 +1.1
143,458 + EX31_RS12370 0.11 +0.9
143,458 + EX31_RS12370 0.11 +0.5
143,458 + EX31_RS12370 0.11 -0.3
143,458 + EX31_RS12370 0.11 -0.6
143,458 + EX31_RS12370 0.11 +0.6
143,458 + EX31_RS12370 0.11 +0.9
143,458 + EX31_RS12370 0.11 +0.5
143,458 + EX31_RS12370 0.11 -0.5
143,458 + EX31_RS12370 0.11 -0.5
143,458 + EX31_RS12370 0.11 +0.6
143,458 + EX31_RS12370 0.11 +1.0
143,458 + EX31_RS12370 0.11 -0.7
143,458 + EX31_RS12370 0.11 -0.1
143,458 + EX31_RS12370 0.11 +1.1
143,459 - EX31_RS12370 0.11 +0.3
143,459 - EX31_RS12370 0.11 +0.8
143,459 - EX31_RS12370 0.11 +0.0
143,459 - EX31_RS12370 0.11 +1.2
143,459 - EX31_RS12370 0.11 +0.2
143,459 - EX31_RS12370 0.11 +0.6
143,459 - EX31_RS12370 0.11 -1.7
143,459 - EX31_RS12370 0.11 +0.1
143,459 - EX31_RS12370 0.11 -0.3
143,459 - EX31_RS12370 0.11 +0.6
143,459 - EX31_RS12370 0.11 -0.9
143,459 - EX31_RS12370 0.11 -2.0
143,459 - EX31_RS12370 0.11 -1.5
143,459 - EX31_RS12370 0.11 +0.4
143,459 - EX31_RS12370 0.11 -0.5
143,459 - EX31_RS12370 0.11 -0.0
143,480 + EX31_RS12370 0.14 -0.2
143,480 + EX31_RS12370 0.14 +0.0
143,480 + EX31_RS12370 0.14 +0.5
143,480 + EX31_RS12370 0.14 +1.0
143,480 + EX31_RS12370 0.14 -0.2
143,480 + EX31_RS12370 0.14 -0.4
143,480 + EX31_RS12370 0.14 -0.4
143,480 + EX31_RS12370 0.14 +0.7
143,480 + EX31_RS12370 0.14 -1.3
143,481 - EX31_RS12370 0.14 -0.6
143,481 - EX31_RS12370 0.14 -0.2
143,481 - EX31_RS12370 0.14 -0.1
143,481 - EX31_RS12370 0.14 +1.2
143,545 + EX31_RS12370 0.23 +0.4
143,546 - EX31_RS12370 0.23 +0.3
143,546 - EX31_RS12370 0.23 +1.2
143,836 - EX31_RS12370 0.62 +0.0
143,836 - EX31_RS12370 0.62 +0.2
143,857 + EX31_RS12370 0.65 -1.1
143,961 - EX31_RS12370 0.79 -0.8
144,024 + EX31_RS12370 0.87 -1.9
144,025 - EX31_RS12370 0.87 -0.3
144,025 - EX31_RS12370 0.87 +1.2
144,025 - EX31_RS12370 0.87 -0.1
144,028 + EX31_RS12370 0.88 -0.1
144,028 + EX31_RS12370 0.88 -0.8
144,028 + EX31_RS12370 0.88 +0.7
144,028 + EX31_RS12370 0.88 +0.4
144,028 + EX31_RS12370 0.88 -0.1
144,028 + EX31_RS12370 0.88 -0.1
144,029 - EX31_RS12370 0.88 +0.5
144,029 - EX31_RS12370 0.88 +3.5
144,182 + -0.0
144,182 + -0.4
144,182 + -0.3
144,182 + -0.2
144,182 + +0.3
144,183 - -0.6
144,183 - +0.6
144,183 - +0.8
144,184 + -1.6
144,184 + +0.4
144,184 + +1.3
144,185 - -1.1
144,185 - +0.2
144,185 - +0.8
144,188 + +1.3
144,188 + +1.3
144,188 + +0.4
144,189 - +0.3
144,189 - -2.8
144,232 - -0.6
144,232 - -1.7
144,232 - -0.1
144,232 - -0.6
144,292 + -1.8
144,293 - -0.5
144,319 + -0.3
144,465 + -1.5
144,484 + -0.6
144,500 + +0.2
144,500 + -0.2
144,500 + -0.2
144,501 - -0.1
144,501 - +0.4
144,579 + EX31_RS12375 0.13 -1.3
144,580 - EX31_RS12375 0.13 -0.6
144,580 - EX31_RS12375 0.13 +0.0
144,728 + EX31_RS12375 0.20 +0.2
144,728 + EX31_RS12375 0.20 +0.5
144,728 + EX31_RS12375 0.20 -0.9
144,729 - EX31_RS12375 0.20 -1.3
144,759 + EX31_RS12375 0.22 +1.3
144,924 + EX31_RS12375 0.31 -0.1
144,925 - EX31_RS12375 0.31 +0.0
144,951 + EX31_RS12375 0.32 +0.3
144,952 - EX31_RS12375 0.32 -0.1
144,952 - EX31_RS12375 0.32 -0.8
144,952 - EX31_RS12375 0.32 +0.0
144,952 - EX31_RS12375 0.32 +0.6
144,952 - EX31_RS12375 0.32 -1.3
144,979 + EX31_RS12375 0.33 -1.1
144,980 - EX31_RS12375 0.34 -0.7
145,008 + EX31_RS12375 0.35 -0.3

Or see this region's nucleotide sequence