Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11495 and EX31_RS11500 are separated by 50 nucleotides EX31_RS11500 and EX31_RS11505 are separated by 123 nucleotides EX31_RS11505 and EX31_RS11510 overlap by 4 nucleotides
EX31_RS11495: EX31_RS11495 - glycosyltransferase family 2 protein, at 236,205 to 237,101
_RS11495
EX31_RS11500: EX31_RS11500 - glycosyltransferase family 2 protein, at 237,152 to 237,985
_RS11500
EX31_RS11505: EX31_RS11505 - dTDP-4-dehydrorhamnose reductase, at 238,109 to 238,981
_RS11505
EX31_RS11510: EX31_RS11510 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 238,978 to 239,514
_RS11510
Position (kb) 237
238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 236.197 kb on - strand at 237.372 kb on - strand, within EX31_RS11500 at 237.391 kb on - strand, within EX31_RS11500 at 237.513 kb on + strand, within EX31_RS11500 at 237.727 kb on - strand, within EX31_RS11500 at 237.807 kb on - strand, within EX31_RS11500 at 237.925 kb on - strand at 237.928 kb on + strand at 237.929 kb on - strand at 238.067 kb on - strand at 238.096 kb on - strand at 238.111 kb on - strand at 238.256 kb on - strand, within EX31_RS11505 at 238.369 kb on - strand, within EX31_RS11505 at 238.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 236,197 - +0.7 237,372 - EX31_RS11500 0.26 +2.8 237,391 - EX31_RS11500 0.29 +0.7 237,513 + EX31_RS11500 0.43 -1.9 237,727 - EX31_RS11500 0.69 +0.2 237,807 - EX31_RS11500 0.79 +1.1 237,925 - -0.3 237,928 + +1.7 237,929 - -0.2 238,067 - -0.5 238,096 - +0.9 238,111 - +0.8 238,256 - EX31_RS11505 0.17 +1.7 238,369 - EX31_RS11505 0.30 +0.1 238,904 + +0.8
Or see this region's nucleotide sequence