Strain Fitness in Rahnella sp. WP5 around EX31_RS11245

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11235 and EX31_RS11240 are separated by 15 nucleotidesEX31_RS11240 and EX31_RS11245 are separated by 15 nucleotidesEX31_RS11245 and EX31_RS11250 are separated by 111 nucleotides EX31_RS11235: EX31_RS11235 - ABC transporter substrate-binding protein, at 180,368 to 181,300 _RS11235 EX31_RS11240: EX31_RS11240 - GNAT family N-acetyltransferase, at 181,316 to 181,831 _RS11240 EX31_RS11245: EX31_RS11245 - amino acid ABC transporter permease, at 181,847 to 182,761 _RS11245 EX31_RS11250: EX31_RS11250 - amino acid ABC transporter ATP-binding protein, at 182,873 to 183,622 _RS11250 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 180.889 kb on + strand, within EX31_RS11235at 180.889 kb on + strand, within EX31_RS11235at 180.890 kb on - strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.981 kb on - strand, within EX31_RS11235at 180.981 kb on - strand, within EX31_RS11235at 181.064 kb on + strand, within EX31_RS11235at 181.065 kb on - strand, within EX31_RS11235at 181.217 kb on + strandat 181.218 kb on - strandat 181.218 kb on - strandat 181.218 kb on - strandat 181.328 kb on - strandat 181.694 kb on + strand, within EX31_RS11240at 181.694 kb on + strand, within EX31_RS11240at 181.695 kb on - strand, within EX31_RS11240at 181.749 kb on - strand, within EX31_RS11240at 181.763 kb on + strand, within EX31_RS11240at 181.846 kb on - strandat 182.002 kb on - strand, within EX31_RS11245at 182.002 kb on - strand, within EX31_RS11245at 182.137 kb on - strand, within EX31_RS11245at 182.137 kb on - strand, within EX31_RS11245at 182.159 kb on + strand, within EX31_RS11245at 182.160 kb on - strand, within EX31_RS11245at 182.161 kb on + strand, within EX31_RS11245at 182.228 kb on + strand, within EX31_RS11245at 182.228 kb on + strand, within EX31_RS11245at 182.385 kb on + strand, within EX31_RS11245at 182.469 kb on + strand, within EX31_RS11245at 182.470 kb on - strand, within EX31_RS11245at 182.534 kb on + strand, within EX31_RS11245at 182.534 kb on + strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.535 kb on - strand, within EX31_RS11245at 182.562 kb on - strand, within EX31_RS11245at 182.580 kb on - strand, within EX31_RS11245at 182.580 kb on - strand, within EX31_RS11245at 182.631 kb on - strand, within EX31_RS11245at 182.631 kb on - strand, within EX31_RS11245at 182.667 kb on - strand, within EX31_RS11245at 182.669 kb on + strand, within EX31_RS11245at 182.669 kb on + strand, within EX31_RS11245at 182.669 kb on + strand, within EX31_RS11245at 182.670 kb on - strandat 182.670 kb on - strandat 182.670 kb on - strandat 182.670 kb on - strandat 182.670 kb on - strandat 182.681 kb on + strandat 182.681 kb on + strandat 182.682 kb on - strandat 182.759 kb on + strandat 182.776 kb on + strandat 182.776 kb on + strandat 182.776 kb on + strandat 182.776 kb on + strandat 182.777 kb on - strandat 182.777 kb on - strandat 182.885 kb on - strandat 182.897 kb on + strandat 182.897 kb on + strandat 182.898 kb on - strandat 183.040 kb on + strand, within EX31_RS11250at 183.059 kb on + strand, within EX31_RS11250at 183.059 kb on + strand, within EX31_RS11250at 183.059 kb on + strand, within EX31_RS11250at 183.060 kb on - strand, within EX31_RS11250at 183.060 kb on - strand, within EX31_RS11250at 183.140 kb on + strand, within EX31_RS11250at 183.162 kb on + strand, within EX31_RS11250at 183.365 kb on - strand, within EX31_RS11250at 183.436 kb on + strand, within EX31_RS11250at 183.436 kb on + strand, within EX31_RS11250at 183.436 kb on + strand, within EX31_RS11250at 183.436 kb on + strand, within EX31_RS11250at 183.523 kb on + strand, within EX31_RS11250at 183.621 kb on - strandat 183.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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180,889 + EX31_RS11235 0.56 +0.5
180,889 + EX31_RS11235 0.56 +1.5
180,890 - EX31_RS11235 0.56 -0.5
180,980 + EX31_RS11235 0.66 -0.0
180,980 + EX31_RS11235 0.66 +0.3
180,980 + EX31_RS11235 0.66 +0.4
180,980 + EX31_RS11235 0.66 -0.5
180,981 - EX31_RS11235 0.66 -0.0
180,981 - EX31_RS11235 0.66 -1.6
181,064 + EX31_RS11235 0.75 -0.8
181,065 - EX31_RS11235 0.75 -0.3
181,217 + +0.9
181,218 - -0.6
181,218 - +0.0
181,218 - +1.3
181,328 - +1.7
181,694 + EX31_RS11240 0.73 -0.9
181,694 + EX31_RS11240 0.73 +0.0
181,695 - EX31_RS11240 0.73 +0.7
181,749 - EX31_RS11240 0.84 +0.5
181,763 + EX31_RS11240 0.87 +0.7
181,846 - +0.4
182,002 - EX31_RS11245 0.17 -0.1
182,002 - EX31_RS11245 0.17 +3.0
182,137 - EX31_RS11245 0.32 +0.1
182,137 - EX31_RS11245 0.32 +0.7
182,159 + EX31_RS11245 0.34 +1.7
182,160 - EX31_RS11245 0.34 +1.7
182,161 + EX31_RS11245 0.34 +0.2
182,228 + EX31_RS11245 0.42 +0.4
182,228 + EX31_RS11245 0.42 -0.6
182,385 + EX31_RS11245 0.59 +0.4
182,469 + EX31_RS11245 0.68 -3.0
182,470 - EX31_RS11245 0.68 -2.5
182,534 + EX31_RS11245 0.75 +0.7
182,534 + EX31_RS11245 0.75 -0.3
182,535 - EX31_RS11245 0.75 +1.7
182,535 - EX31_RS11245 0.75 -0.3
182,535 - EX31_RS11245 0.75 +2.5
182,535 - EX31_RS11245 0.75 +2.2
182,562 - EX31_RS11245 0.78 -0.8
182,580 - EX31_RS11245 0.80 +1.8
182,580 - EX31_RS11245 0.80 +0.9
182,631 - EX31_RS11245 0.86 +0.7
182,631 - EX31_RS11245 0.86 -0.5
182,667 - EX31_RS11245 0.90 -0.9
182,669 + EX31_RS11245 0.90 -0.3
182,669 + EX31_RS11245 0.90 -0.1
182,669 + EX31_RS11245 0.90 +1.2
182,670 - +0.7
182,670 - +1.4
182,670 - -0.1
182,670 - +1.9
182,670 - +1.8
182,681 + +2.3
182,681 + +0.4
182,682 - -1.8
182,759 + -0.3
182,776 + +1.2
182,776 + +0.7
182,776 + -0.6
182,776 + -0.0
182,777 - +1.7
182,777 - -0.5
182,885 - -0.6
182,897 + +0.7
182,897 + -0.3
182,898 - -0.3
183,040 + EX31_RS11250 0.22 +2.0
183,059 + EX31_RS11250 0.25 +0.2
183,059 + EX31_RS11250 0.25 -2.1
183,059 + EX31_RS11250 0.25 -0.9
183,060 - EX31_RS11250 0.25 +1.0
183,060 - EX31_RS11250 0.25 +1.0
183,140 + EX31_RS11250 0.36 -0.7
183,162 + EX31_RS11250 0.39 +0.2
183,365 - EX31_RS11250 0.66 +1.4
183,436 + EX31_RS11250 0.75 +1.3
183,436 + EX31_RS11250 0.75 +0.1
183,436 + EX31_RS11250 0.75 +0.7
183,436 + EX31_RS11250 0.75 +0.1
183,523 + EX31_RS11250 0.87 +0.7
183,621 - +0.9
183,697 + -0.3

Or see this region's nucleotide sequence