Strain Fitness in Rahnella sp. WP5 around EX31_RS10995

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10990 and EX31_RS10995 are separated by 145 nucleotidesEX31_RS10995 and EX31_RS11000 are separated by 84 nucleotides EX31_RS10990: EX31_RS10990 - LysR family transcriptional regulator, at 126,671 to 127,567 _RS10990 EX31_RS10995: EX31_RS10995 - phenolic acid decarboxylase, at 127,713 to 128,219 _RS10995 EX31_RS11000: EX31_RS11000 - alpha/beta hydrolase, at 128,304 to 129,317 _RS11000 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 126.760 kb on + strandat 126.760 kb on + strandat 126.761 kb on - strand, within EX31_RS10990at 126.761 kb on - strand, within EX31_RS10990at 126.761 kb on - strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.976 kb on + strand, within EX31_RS10990at 126.977 kb on - strand, within EX31_RS10990at 127.092 kb on - strand, within EX31_RS10990at 127.122 kb on + strand, within EX31_RS10990at 127.122 kb on + strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.124 kb on + strand, within EX31_RS10990at 127.124 kb on + strand, within EX31_RS10990at 127.125 kb on - strand, within EX31_RS10990at 127.125 kb on - strand, within EX31_RS10990at 127.125 kb on - strand, within EX31_RS10990at 127.145 kb on + strand, within EX31_RS10990at 127.146 kb on - strand, within EX31_RS10990at 127.146 kb on - strand, within EX31_RS10990at 127.146 kb on - strand, within EX31_RS10990at 127.242 kb on + strand, within EX31_RS10990at 127.437 kb on - strand, within EX31_RS10990at 127.437 kb on - strand, within EX31_RS10990at 127.453 kb on - strand, within EX31_RS10990at 127.526 kb on + strandat 127.526 kb on + strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.582 kb on + strandat 127.583 kb on - strandat 127.583 kb on - strandat 127.583 kb on - strandat 127.655 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.767 kb on + strand, within EX31_RS10995at 127.767 kb on + strand, within EX31_RS10995at 127.767 kb on + strand, within EX31_RS10995at 127.768 kb on - strand, within EX31_RS10995at 127.768 kb on - strand, within EX31_RS10995at 127.768 kb on - strand, within EX31_RS10995at 127.792 kb on - strand, within EX31_RS10995at 127.800 kb on + strand, within EX31_RS10995at 127.801 kb on - strand, within EX31_RS10995at 127.801 kb on - strand, within EX31_RS10995at 127.881 kb on + strand, within EX31_RS10995at 127.881 kb on + strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.884 kb on - strand, within EX31_RS10995at 128.051 kb on + strand, within EX31_RS10995at 128.051 kb on + strand, within EX31_RS10995at 128.052 kb on - strand, within EX31_RS10995at 128.126 kb on + strand, within EX31_RS10995at 128.195 kb on + strandat 128.237 kb on + strandat 128.238 kb on - strandat 128.382 kb on - strandat 128.409 kb on - strand, within EX31_RS11000at 128.409 kb on - strand, within EX31_RS11000at 128.440 kb on + strand, within EX31_RS11000at 128.441 kb on - strand, within EX31_RS11000at 128.441 kb on - strand, within EX31_RS11000at 128.461 kb on - strand, within EX31_RS11000at 128.461 kb on - strand, within EX31_RS11000at 128.529 kb on + strand, within EX31_RS11000at 128.552 kb on - strand, within EX31_RS11000at 128.581 kb on + strand, within EX31_RS11000at 128.581 kb on + strand, within EX31_RS11000at 128.581 kb on + strand, within EX31_RS11000at 128.581 kb on + strand, within EX31_RS11000at 128.582 kb on - strand, within EX31_RS11000at 128.582 kb on - strand, within EX31_RS11000at 128.582 kb on - strand, within EX31_RS11000at 128.582 kb on - strand, within EX31_RS11000at 128.584 kb on - strand, within EX31_RS11000at 128.679 kb on - strand, within EX31_RS11000at 128.679 kb on - strand, within EX31_RS11000at 128.687 kb on - strand, within EX31_RS11000at 128.687 kb on - strand, within EX31_RS11000at 128.687 kb on - strand, within EX31_RS11000at 128.689 kb on + strand, within EX31_RS11000at 128.690 kb on - strand, within EX31_RS11000at 128.704 kb on + strand, within EX31_RS11000at 128.705 kb on - strand, within EX31_RS11000at 128.747 kb on - strand, within EX31_RS11000at 128.768 kb on - strand, within EX31_RS11000at 128.781 kb on - strand, within EX31_RS11000at 128.842 kb on + strand, within EX31_RS11000at 128.842 kb on + strand, within EX31_RS11000at 128.842 kb on + strand, within EX31_RS11000at 128.842 kb on + strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.843 kb on - strand, within EX31_RS11000at 128.871 kb on - strand, within EX31_RS11000at 128.907 kb on - strand, within EX31_RS11000at 128.921 kb on + strand, within EX31_RS11000at 128.963 kb on - strand, within EX31_RS11000at 129.051 kb on - strand, within EX31_RS11000at 129.116 kb on + strand, within EX31_RS11000at 129.116 kb on + strand, within EX31_RS11000at 129.117 kb on - strand, within EX31_RS11000at 129.143 kb on - strand, within EX31_RS11000

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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126,760 + +2.5
126,760 + -0.6
126,761 - EX31_RS10990 0.10 +2.4
126,761 - EX31_RS10990 0.10 -0.1
126,761 - EX31_RS10990 0.10 +1.3
126,762 + EX31_RS10990 0.10 -0.3
126,762 + EX31_RS10990 0.10 -0.3
126,762 + EX31_RS10990 0.10 +0.1
126,762 + EX31_RS10990 0.10 -0.6
126,762 + EX31_RS10990 0.10 -0.3
126,762 + EX31_RS10990 0.10 +0.7
126,762 + EX31_RS10990 0.10 -0.2
126,763 - EX31_RS10990 0.10 +0.9
126,763 - EX31_RS10990 0.10 +1.3
126,763 - EX31_RS10990 0.10 +0.9
126,763 - EX31_RS10990 0.10 -0.7
126,763 - EX31_RS10990 0.10 +0.4
126,763 - EX31_RS10990 0.10 +3.7
126,976 + EX31_RS10990 0.34 +1.1
126,977 - EX31_RS10990 0.34 +0.4
127,092 - EX31_RS10990 0.47 +1.1
127,122 + EX31_RS10990 0.50 -1.6
127,122 + EX31_RS10990 0.50 -0.5
127,123 - EX31_RS10990 0.50 +0.7
127,123 - EX31_RS10990 0.50 +2.3
127,123 - EX31_RS10990 0.50 -0.8
127,123 - EX31_RS10990 0.50 -0.3
127,123 - EX31_RS10990 0.50 +0.7
127,123 - EX31_RS10990 0.50 +1.8
127,124 + EX31_RS10990 0.51 -0.6
127,124 + EX31_RS10990 0.51 +1.3
127,125 - EX31_RS10990 0.51 -0.5
127,125 - EX31_RS10990 0.51 -1.4
127,125 - EX31_RS10990 0.51 +0.3
127,145 + EX31_RS10990 0.53 +2.1
127,146 - EX31_RS10990 0.53 -0.1
127,146 - EX31_RS10990 0.53 +0.8
127,146 - EX31_RS10990 0.53 -1.6
127,242 + EX31_RS10990 0.64 +1.3
127,437 - EX31_RS10990 0.85 +2.8
127,437 - EX31_RS10990 0.85 -0.9
127,453 - EX31_RS10990 0.87 +1.7
127,526 + +0.3
127,526 + +0.7
127,527 - +0.7
127,527 - +2.3
127,582 + +0.7
127,583 - +0.7
127,583 - +1.0
127,583 - +0.1
127,655 - +0.7
127,710 - +1.3
127,710 - -0.1
127,710 - +0.1
127,710 - +0.4
127,710 - +0.7
127,767 + EX31_RS10995 0.11 -0.5
127,767 + EX31_RS10995 0.11 +0.7
127,767 + EX31_RS10995 0.11 +0.1
127,768 - EX31_RS10995 0.11 -0.3
127,768 - EX31_RS10995 0.11 +2.3
127,768 - EX31_RS10995 0.11 +2.0
127,792 - EX31_RS10995 0.16 +0.3
127,800 + EX31_RS10995 0.17 +1.4
127,801 - EX31_RS10995 0.17 -0.0
127,801 - EX31_RS10995 0.17 +1.7
127,881 + EX31_RS10995 0.33 +2.7
127,881 + EX31_RS10995 0.33 +1.0
127,882 - EX31_RS10995 0.33 -0.0
127,882 - EX31_RS10995 0.33 +0.5
127,882 - EX31_RS10995 0.33 +1.3
127,882 - EX31_RS10995 0.33 +1.5
127,882 - EX31_RS10995 0.33 +1.7
127,882 - EX31_RS10995 0.33 +0.7
127,884 - EX31_RS10995 0.34 +1.8
128,051 + EX31_RS10995 0.67 +0.7
128,051 + EX31_RS10995 0.67 -0.0
128,052 - EX31_RS10995 0.67 +2.7
128,126 + EX31_RS10995 0.81 +2.7
128,195 + +0.7
128,237 + +0.2
128,238 - +1.9
128,382 - +0.1
128,409 - EX31_RS11000 0.10 +2.7
128,409 - EX31_RS11000 0.10 +1.1
128,440 + EX31_RS11000 0.13 +0.7
128,441 - EX31_RS11000 0.14 -0.5
128,441 - EX31_RS11000 0.14 +1.3
128,461 - EX31_RS11000 0.15 +2.3
128,461 - EX31_RS11000 0.15 +1.0
128,529 + EX31_RS11000 0.22 -0.5
128,552 - EX31_RS11000 0.24 +0.3
128,581 + EX31_RS11000 0.27 +0.9
128,581 + EX31_RS11000 0.27 +1.7
128,581 + EX31_RS11000 0.27 +1.7
128,581 + EX31_RS11000 0.27 +0.7
128,582 - EX31_RS11000 0.27 -0.0
128,582 - EX31_RS11000 0.27 +0.4
128,582 - EX31_RS11000 0.27 +1.5
128,582 - EX31_RS11000 0.27 +1.0
128,584 - EX31_RS11000 0.28 -0.6
128,679 - EX31_RS11000 0.37 +0.6
128,679 - EX31_RS11000 0.37 +2.5
128,687 - EX31_RS11000 0.38 +1.0
128,687 - EX31_RS11000 0.38 -0.1
128,687 - EX31_RS11000 0.38 -0.1
128,689 + EX31_RS11000 0.38 +0.7
128,690 - EX31_RS11000 0.38 +0.8
128,704 + EX31_RS11000 0.39 -1.6
128,705 - EX31_RS11000 0.40 -0.0
128,747 - EX31_RS11000 0.44 -0.1
128,768 - EX31_RS11000 0.46 -1.9
128,781 - EX31_RS11000 0.47 -0.0
128,842 + EX31_RS11000 0.53 -0.0
128,842 + EX31_RS11000 0.53 +1.7
128,842 + EX31_RS11000 0.53 +1.2
128,842 + EX31_RS11000 0.53 -0.3
128,843 - EX31_RS11000 0.53 -0.0
128,843 - EX31_RS11000 0.53 -0.3
128,843 - EX31_RS11000 0.53 -0.4
128,843 - EX31_RS11000 0.53 +1.4
128,843 - EX31_RS11000 0.53 +1.0
128,843 - EX31_RS11000 0.53 -0.1
128,843 - EX31_RS11000 0.53 +0.3
128,843 - EX31_RS11000 0.53 +0.2
128,843 - EX31_RS11000 0.53 +1.1
128,871 - EX31_RS11000 0.56 -1.6
128,907 - EX31_RS11000 0.59 +0.7
128,921 + EX31_RS11000 0.61 +0.2
128,963 - EX31_RS11000 0.65 +0.8
129,051 - EX31_RS11000 0.74 +0.7
129,116 + EX31_RS11000 0.80 +1.1
129,116 + EX31_RS11000 0.80 -1.1
129,117 - EX31_RS11000 0.80 -0.0
129,143 - EX31_RS11000 0.83 +0.1

Or see this region's nucleotide sequence