Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10860 and EX31_RS10865 are separated by 79 nucleotides EX31_RS10865 and EX31_RS10870 are separated by 13 nucleotides EX31_RS10870 and EX31_RS10875 overlap by 1 nucleotides
EX31_RS10860: EX31_RS10860 - multidrug ABC transporter permease/ATP-binding protein, at 96,982 to 98,643
_RS10860
EX31_RS10865: EX31_RS10865 - hypothetical protein, at 98,723 to 98,962
_RS10865
EX31_RS10870: EX31_RS10870 - LysR family transcriptional regulator, at 98,976 to 99,557
_RS10870
EX31_RS10875: EX31_RS10875 - DUF445 family protein, at 99,557 to 100,843
_RS10875
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.723 kb on - strand, within EX31_RS10860 at 97.723 kb on - strand, within EX31_RS10860 at 97.724 kb on + strand, within EX31_RS10860 at 97.725 kb on - strand, within EX31_RS10860 at 97.804 kb on + strand, within EX31_RS10860 at 97.805 kb on - strand, within EX31_RS10860 at 97.805 kb on - strand, within EX31_RS10860 at 97.841 kb on + strand, within EX31_RS10860 at 97.841 kb on + strand, within EX31_RS10860 at 97.842 kb on - strand, within EX31_RS10860 at 97.842 kb on - strand, within EX31_RS10860 at 97.846 kb on - strand, within EX31_RS10860 at 97.879 kb on - strand, within EX31_RS10860 at 97.999 kb on - strand, within EX31_RS10860 at 98.004 kb on - strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.005 kb on + strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.006 kb on - strand, within EX31_RS10860 at 98.247 kb on + strand, within EX31_RS10860 at 98.373 kb on + strand, within EX31_RS10860 at 98.374 kb on - strand, within EX31_RS10860 at 98.402 kb on + strand, within EX31_RS10860 at 98.402 kb on + strand, within EX31_RS10860 at 98.402 kb on + strand, within EX31_RS10860 at 98.402 kb on + strand, within EX31_RS10860 at 98.473 kb on + strand, within EX31_RS10860 at 98.473 kb on + strand, within EX31_RS10860 at 98.474 kb on - strand, within EX31_RS10860 at 98.620 kb on - strand at 98.620 kb on - strand at 98.632 kb on + strand at 98.633 kb on - strand at 98.633 kb on - strand at 98.738 kb on - strand at 98.738 kb on - strand at 98.861 kb on - strand, within EX31_RS10865 at 98.861 kb on - strand, within EX31_RS10865 at 98.861 kb on - strand, within EX31_RS10865 at 98.863 kb on - strand, within EX31_RS10865 at 98.874 kb on - strand, within EX31_RS10865 at 98.881 kb on + strand, within EX31_RS10865 at 98.885 kb on - strand, within EX31_RS10865 at 98.911 kb on + strand, within EX31_RS10865 at 98.985 kb on - strand at 99.109 kb on + strand, within EX31_RS10870 at 99.109 kb on + strand, within EX31_RS10870 at 99.196 kb on + strand, within EX31_RS10870 at 99.196 kb on + strand, within EX31_RS10870 at 99.211 kb on - strand, within EX31_RS10870 at 99.211 kb on - strand, within EX31_RS10870 at 99.221 kb on - strand, within EX31_RS10870 at 99.221 kb on - strand, within EX31_RS10870 at 99.321 kb on + strand, within EX31_RS10870 at 99.321 kb on + strand, within EX31_RS10870 at 99.321 kb on + strand, within EX31_RS10870 at 99.322 kb on - strand, within EX31_RS10870 at 99.322 kb on - strand, within EX31_RS10870 at 99.322 kb on - strand, within EX31_RS10870 at 99.322 kb on - strand, within EX31_RS10870 at 99.343 kb on - strand, within EX31_RS10870 at 99.348 kb on + strand, within EX31_RS10870 at 99.349 kb on - strand, within EX31_RS10870 at 99.397 kb on - strand, within EX31_RS10870 at 99.425 kb on + strand, within EX31_RS10870 at 99.555 kb on + strand at 99.586 kb on + strand at 99.586 kb on + strand at 99.587 kb on - strand at 99.862 kb on + strand, within EX31_RS10875 at 99.862 kb on + strand, within EX31_RS10875 at 99.862 kb on + strand, within EX31_RS10875 at 99.862 kb on + strand, within EX31_RS10875 at 99.863 kb on - strand, within EX31_RS10875 at 99.863 kb on - strand, within EX31_RS10875 at 99.863 kb on - strand, within EX31_RS10875 at 99.863 kb on - strand, within EX31_RS10875 at 99.863 kb on - strand, within EX31_RS10875 at 99.947 kb on + strand, within EX31_RS10875 at 99.948 kb on - strand, within EX31_RS10875 at 99.948 kb on - strand, within EX31_RS10875
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 97,723 - EX31_RS10860 0.45 +3.0 97,723 - EX31_RS10860 0.45 -1.4 97,724 + EX31_RS10860 0.45 +1.7 97,725 - EX31_RS10860 0.45 -0.1 97,804 + EX31_RS10860 0.49 +1.5 97,805 - EX31_RS10860 0.50 -0.6 97,805 - EX31_RS10860 0.50 +0.2 97,841 + EX31_RS10860 0.52 -1.5 97,841 + EX31_RS10860 0.52 +1.3 97,842 - EX31_RS10860 0.52 +1.1 97,842 - EX31_RS10860 0.52 +0.7 97,846 - EX31_RS10860 0.52 -0.4 97,879 - EX31_RS10860 0.54 -1.1 97,999 - EX31_RS10860 0.61 -0.5 98,004 - EX31_RS10860 0.61 -0.2 98,005 + EX31_RS10860 0.62 -0.0 98,005 + EX31_RS10860 0.62 -1.3 98,005 + EX31_RS10860 0.62 +1.5 98,005 + EX31_RS10860 0.62 -2.3 98,005 + EX31_RS10860 0.62 -0.9 98,005 + EX31_RS10860 0.62 -0.1 98,005 + EX31_RS10860 0.62 -1.3 98,005 + EX31_RS10860 0.62 +1.2 98,006 - EX31_RS10860 0.62 -0.5 98,006 - EX31_RS10860 0.62 +1.3 98,006 - EX31_RS10860 0.62 -0.3 98,006 - EX31_RS10860 0.62 -0.0 98,006 - EX31_RS10860 0.62 +0.1 98,006 - EX31_RS10860 0.62 -0.1 98,006 - EX31_RS10860 0.62 -0.9 98,006 - EX31_RS10860 0.62 +1.7 98,247 + EX31_RS10860 0.76 -1.3 98,373 + EX31_RS10860 0.84 -0.1 98,374 - EX31_RS10860 0.84 +0.4 98,402 + EX31_RS10860 0.85 -1.2 98,402 + EX31_RS10860 0.85 -0.6 98,402 + EX31_RS10860 0.85 +0.9 98,402 + EX31_RS10860 0.85 -0.1 98,473 + EX31_RS10860 0.90 -0.6 98,473 + EX31_RS10860 0.90 -0.6 98,474 - EX31_RS10860 0.90 +0.7 98,620 - +0.7 98,620 - +0.7 98,632 + +0.7 98,633 - -0.3 98,633 - +0.4 98,738 - +1.7 98,738 - +1.0 98,861 - EX31_RS10865 0.57 +0.2 98,861 - EX31_RS10865 0.57 +1.3 98,861 - EX31_RS10865 0.57 +0.7 98,863 - EX31_RS10865 0.58 +0.7 98,874 - EX31_RS10865 0.63 -0.3 98,881 + EX31_RS10865 0.66 -0.3 98,885 - EX31_RS10865 0.68 +1.8 98,911 + EX31_RS10865 0.78 +1.1 98,985 - +1.4 99,109 + EX31_RS10870 0.23 -0.5 99,109 + EX31_RS10870 0.23 +0.3 99,196 + EX31_RS10870 0.38 +0.4 99,196 + EX31_RS10870 0.38 +0.1 99,211 - EX31_RS10870 0.40 +0.7 99,211 - EX31_RS10870 0.40 -0.3 99,221 - EX31_RS10870 0.42 +1.7 99,221 - EX31_RS10870 0.42 -1.8 99,321 + EX31_RS10870 0.59 -0.2 99,321 + EX31_RS10870 0.59 +2.7 99,321 + EX31_RS10870 0.59 -0.7 99,322 - EX31_RS10870 0.59 +0.7 99,322 - EX31_RS10870 0.59 +0.3 99,322 - EX31_RS10870 0.59 -1.1 99,322 - EX31_RS10870 0.59 -0.6 99,343 - EX31_RS10870 0.63 +0.7 99,348 + EX31_RS10870 0.64 -1.0 99,349 - EX31_RS10870 0.64 -1.3 99,397 - EX31_RS10870 0.72 +0.7 99,425 + EX31_RS10870 0.77 -1.2 99,555 + +1.3 99,586 + +0.3 99,586 + -0.0 99,587 - +0.7 99,862 + EX31_RS10875 0.24 +1.1 99,862 + EX31_RS10875 0.24 -0.6 99,862 + EX31_RS10875 0.24 -0.3 99,862 + EX31_RS10875 0.24 -0.7 99,863 - EX31_RS10875 0.24 -0.6 99,863 - EX31_RS10875 0.24 +0.1 99,863 - EX31_RS10875 0.24 -0.3 99,863 - EX31_RS10875 0.24 -0.5 99,863 - EX31_RS10875 0.24 -0.3 99,947 + EX31_RS10875 0.30 +2.3 99,948 - EX31_RS10875 0.30 -0.5 99,948 - EX31_RS10875 0.30 -0.7
Or see this region's nucleotide sequence