Strain Fitness in Rahnella sp. WP5 around EX31_RS10630

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10620 and EX31_RS10625 are separated by 65 nucleotidesEX31_RS10625 and EX31_RS10630 are separated by 198 nucleotidesEX31_RS10630 and EX31_RS10635 are separated by 407 nucleotides EX31_RS10620: EX31_RS10620 - RidA family protein, at 37,457 to 37,801 _RS10620 EX31_RS10625: EX31_RS10625 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 37,867 to 38,508 _RS10625 EX31_RS10630: EX31_RS10630 - glucose-6-phosphate dehydrogenase, at 38,707 to 40,182 _RS10630 EX31_RS10635: EX31_RS10635 - MurR/RpiR family transcriptional regulator, at 40,590 to 41,459 _RS10635 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 37.820 kb on - strandat 37.994 kb on + strand, within EX31_RS10625at 38.003 kb on + strand, within EX31_RS10625at 38.004 kb on - strand, within EX31_RS10625at 38.004 kb on - strand, within EX31_RS10625at 38.112 kb on + strand, within EX31_RS10625at 38.161 kb on - strand, within EX31_RS10625at 38.161 kb on - strand, within EX31_RS10625at 38.161 kb on - strand, within EX31_RS10625at 38.176 kb on + strand, within EX31_RS10625at 38.185 kb on - strand, within EX31_RS10625at 38.185 kb on - strand, within EX31_RS10625at 38.185 kb on - strand, within EX31_RS10625at 38.185 kb on - strand, within EX31_RS10625at 38.292 kb on + strand, within EX31_RS10625at 38.293 kb on - strand, within EX31_RS10625at 38.442 kb on + strand, within EX31_RS10625at 38.621 kb on - strandat 38.624 kb on - strandat 38.624 kb on - strandat 38.624 kb on - strandat 38.624 kb on - strandat 38.624 kb on - strandat 38.637 kb on + strandat 38.638 kb on - strandat 38.638 kb on - strandat 38.638 kb on - strandat 38.638 kb on - strandat 38.685 kb on + strandat 38.696 kb on + strandat 38.701 kb on + strandat 38.701 kb on + strandat 38.701 kb on + strandat 39.127 kb on - strand, within EX31_RS10630at 40.010 kb on + strand, within EX31_RS10630at 40.209 kb on + strandat 40.210 kb on - strandat 40.215 kb on - strandat 40.215 kb on - strandat 40.215 kb on - strandat 40.264 kb on - strandat 40.264 kb on - strandat 40.264 kb on - strandat 40.291 kb on - strandat 40.291 kb on - strandat 40.291 kb on - strandat 40.291 kb on - strandat 40.312 kb on + strandat 40.313 kb on - strandat 40.365 kb on - strandat 40.365 kb on - strandat 40.365 kb on - strandat 40.384 kb on - strandat 40.384 kb on - strandat 40.435 kb on + strandat 40.446 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.521 kb on - strandat 40.523 kb on - strandat 40.523 kb on - strandat 40.523 kb on - strandat 40.574 kb on + strandat 40.596 kb on - strandat 40.737 kb on - strand, within EX31_RS10635at 40.737 kb on - strand, within EX31_RS10635at 40.741 kb on + strand, within EX31_RS10635at 40.741 kb on + strand, within EX31_RS10635at 40.792 kb on + strand, within EX31_RS10635at 40.793 kb on - strand, within EX31_RS10635at 40.793 kb on - strand, within EX31_RS10635at 40.827 kb on + strand, within EX31_RS10635at 40.827 kb on + strand, within EX31_RS10635at 40.827 kb on + strand, within EX31_RS10635at 40.827 kb on + strand, within EX31_RS10635at 40.827 kb on + strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.828 kb on - strand, within EX31_RS10635at 40.839 kb on - strand, within EX31_RS10635at 40.869 kb on + strand, within EX31_RS10635at 40.869 kb on + strand, within EX31_RS10635at 40.869 kb on + strand, within EX31_RS10635at 40.870 kb on - strand, within EX31_RS10635at 40.870 kb on - strand, within EX31_RS10635at 40.923 kb on - strand, within EX31_RS10635at 41.048 kb on + strand, within EX31_RS10635at 41.064 kb on + strand, within EX31_RS10635at 41.065 kb on - strand, within EX31_RS10635at 41.065 kb on - strand, within EX31_RS10635at 41.065 kb on - strand, within EX31_RS10635

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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37,820 - +0.2
37,994 + EX31_RS10625 0.20 -0.9
38,003 + EX31_RS10625 0.21 +0.2
38,004 - EX31_RS10625 0.21 -0.3
38,004 - EX31_RS10625 0.21 -1.9
38,112 + EX31_RS10625 0.38 +1.1
38,161 - EX31_RS10625 0.46 +1.3
38,161 - EX31_RS10625 0.46 -0.3
38,161 - EX31_RS10625 0.46 +1.4
38,176 + EX31_RS10625 0.48 +0.7
38,185 - EX31_RS10625 0.50 +1.3
38,185 - EX31_RS10625 0.50 +1.1
38,185 - EX31_RS10625 0.50 -0.5
38,185 - EX31_RS10625 0.50 -0.7
38,292 + EX31_RS10625 0.66 -0.2
38,293 - EX31_RS10625 0.66 +0.2
38,442 + EX31_RS10625 0.90 +0.3
38,621 - +0.6
38,624 - +0.1
38,624 - -0.2
38,624 - -0.6
38,624 - -0.3
38,624 - -1.4
38,637 + +0.7
38,638 - +0.5
38,638 - +1.9
38,638 - -1.1
38,638 - +0.4
38,685 + +0.7
38,696 + +0.3
38,701 + +1.7
38,701 + +2.3
38,701 + +0.7
39,127 - EX31_RS10630 0.28 -1.6
40,010 + EX31_RS10630 0.88 -0.1
40,209 + +1.7
40,210 - +1.1
40,215 - +3.5
40,215 - +0.4
40,215 - -2.1
40,264 - -0.3
40,264 - +2.3
40,264 - +0.3
40,291 - +0.0
40,291 - +1.0
40,291 - +0.7
40,291 - -0.7
40,312 + +1.3
40,313 - +0.3
40,365 - +1.5
40,365 - -0.3
40,365 - -1.3
40,384 - -1.3
40,384 - +2.3
40,435 + +0.7
40,446 - +1.7
40,518 - +1.7
40,518 - -0.3
40,521 - +1.4
40,523 - -0.9
40,523 - -0.2
40,523 - -0.8
40,574 + +0.4
40,596 - +0.4
40,737 - EX31_RS10635 0.17 -0.1
40,737 - EX31_RS10635 0.17 -1.0
40,741 + EX31_RS10635 0.17 +0.1
40,741 + EX31_RS10635 0.17 +1.4
40,792 + EX31_RS10635 0.23 +0.1
40,793 - EX31_RS10635 0.23 -0.8
40,793 - EX31_RS10635 0.23 +1.9
40,827 + EX31_RS10635 0.27 -0.6
40,827 + EX31_RS10635 0.27 -1.3
40,827 + EX31_RS10635 0.27 +0.1
40,827 + EX31_RS10635 0.27 +0.9
40,827 + EX31_RS10635 0.27 +1.0
40,828 - EX31_RS10635 0.27 -1.6
40,828 - EX31_RS10635 0.27 -0.2
40,828 - EX31_RS10635 0.27 -0.1
40,828 - EX31_RS10635 0.27 -1.6
40,828 - EX31_RS10635 0.27 +0.7
40,828 - EX31_RS10635 0.27 +0.1
40,828 - EX31_RS10635 0.27 +0.7
40,828 - EX31_RS10635 0.27 -1.6
40,828 - EX31_RS10635 0.27 -0.3
40,828 - EX31_RS10635 0.27 +0.9
40,828 - EX31_RS10635 0.27 -0.1
40,828 - EX31_RS10635 0.27 -0.3
40,828 - EX31_RS10635 0.27 -1.8
40,828 - EX31_RS10635 0.27 -0.3
40,828 - EX31_RS10635 0.27 -0.5
40,839 - EX31_RS10635 0.29 -3.9
40,869 + EX31_RS10635 0.32 +1.9
40,869 + EX31_RS10635 0.32 +0.7
40,869 + EX31_RS10635 0.32 -2.5
40,870 - EX31_RS10635 0.32 -0.3
40,870 - EX31_RS10635 0.32 -0.9
40,923 - EX31_RS10635 0.38 +0.3
41,048 + EX31_RS10635 0.53 +0.3
41,064 + EX31_RS10635 0.54 +0.5
41,065 - EX31_RS10635 0.55 +0.7
41,065 - EX31_RS10635 0.55 -0.1
41,065 - EX31_RS10635 0.55 +2.0

Or see this region's nucleotide sequence