Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10615 and EX31_RS10620 are separated by 142 nucleotides EX31_RS10620 and EX31_RS10625 are separated by 65 nucleotides EX31_RS10625 and EX31_RS10630 are separated by 198 nucleotides
EX31_RS10615: EX31_RS10615 - ATP-dependent DNA helicase, at 35,401 to 37,314
_RS10615
EX31_RS10620: EX31_RS10620 - RidA family protein, at 37,457 to 37,801
_RS10620
EX31_RS10625: EX31_RS10625 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 37,867 to 38,508
_RS10625
EX31_RS10630: EX31_RS10630 - glucose-6-phosphate dehydrogenase, at 38,707 to 40,182
_RS10630
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.994 kb on + strand, within EX31_RS10615 at 36.995 kb on - strand, within EX31_RS10615 at 36.995 kb on - strand, within EX31_RS10615 at 36.995 kb on - strand, within EX31_RS10615 at 36.995 kb on - strand, within EX31_RS10615 at 36.998 kb on + strand, within EX31_RS10615 at 36.998 kb on + strand, within EX31_RS10615 at 36.999 kb on - strand, within EX31_RS10615 at 37.077 kb on - strand, within EX31_RS10615 at 37.077 kb on - strand, within EX31_RS10615 at 37.091 kb on - strand, within EX31_RS10615 at 37.113 kb on + strand, within EX31_RS10615 at 37.113 kb on + strand, within EX31_RS10615 at 37.114 kb on - strand, within EX31_RS10615 at 37.151 kb on + strand at 37.152 kb on - strand at 37.157 kb on + strand at 37.158 kb on - strand at 37.349 kb on - strand at 37.371 kb on - strand at 37.396 kb on + strand at 37.397 kb on - strand at 37.397 kb on - strand at 37.397 kb on - strand at 37.453 kb on + strand at 37.453 kb on + strand at 37.456 kb on + strand at 37.456 kb on + strand at 37.456 kb on + strand at 37.456 kb on + strand at 37.456 kb on + strand at 37.456 kb on + strand at 37.457 kb on - strand at 37.457 kb on - strand at 37.457 kb on - strand at 37.457 kb on - strand at 37.523 kb on + strand, within EX31_RS10620 at 37.523 kb on + strand, within EX31_RS10620 at 37.523 kb on + strand, within EX31_RS10620 at 37.524 kb on - strand, within EX31_RS10620 at 37.664 kb on - strand, within EX31_RS10620 at 37.820 kb on - strand at 37.994 kb on + strand, within EX31_RS10625 at 38.003 kb on + strand, within EX31_RS10625 at 38.004 kb on - strand, within EX31_RS10625 at 38.004 kb on - strand, within EX31_RS10625 at 38.112 kb on + strand, within EX31_RS10625 at 38.161 kb on - strand, within EX31_RS10625 at 38.161 kb on - strand, within EX31_RS10625 at 38.161 kb on - strand, within EX31_RS10625 at 38.176 kb on + strand, within EX31_RS10625 at 38.185 kb on - strand, within EX31_RS10625 at 38.185 kb on - strand, within EX31_RS10625 at 38.185 kb on - strand, within EX31_RS10625 at 38.185 kb on - strand, within EX31_RS10625 at 38.292 kb on + strand, within EX31_RS10625 at 38.293 kb on - strand, within EX31_RS10625 at 38.442 kb on + strand, within EX31_RS10625 at 38.621 kb on - strand at 38.624 kb on - strand at 38.624 kb on - strand at 38.624 kb on - strand at 38.624 kb on - strand at 38.624 kb on - strand at 38.637 kb on + strand at 38.638 kb on - strand at 38.638 kb on - strand at 38.638 kb on - strand at 38.638 kb on - strand at 38.685 kb on + strand at 38.696 kb on + strand at 38.701 kb on + strand at 38.701 kb on + strand at 38.701 kb on + strand at 39.127 kb on - strand, within EX31_RS10630
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 36,994 + EX31_RS10615 0.83 +0.1 36,995 - EX31_RS10615 0.83 +0.1 36,995 - EX31_RS10615 0.83 -0.6 36,995 - EX31_RS10615 0.83 -0.5 36,995 - EX31_RS10615 0.83 +0.9 36,998 + EX31_RS10615 0.83 -0.1 36,998 + EX31_RS10615 0.83 -0.1 36,999 - EX31_RS10615 0.83 -0.3 37,077 - EX31_RS10615 0.88 -0.3 37,077 - EX31_RS10615 0.88 -1.1 37,091 - EX31_RS10615 0.88 -1.1 37,113 + EX31_RS10615 0.89 +1.7 37,113 + EX31_RS10615 0.89 +0.7 37,114 - EX31_RS10615 0.89 -0.1 37,151 + -2.5 37,152 - -0.9 37,157 + +1.5 37,158 - -1.3 37,349 - +2.0 37,371 - +1.3 37,396 + +1.7 37,397 - +0.1 37,397 - +0.4 37,397 - +1.3 37,453 + +1.4 37,453 + -0.3 37,456 + +0.2 37,456 + -0.2 37,456 + +0.9 37,456 + -2.3 37,456 + +0.7 37,456 + +0.8 37,457 - -1.2 37,457 - -0.3 37,457 - -1.1 37,457 - -2.8 37,523 + EX31_RS10620 0.19 -2.6 37,523 + EX31_RS10620 0.19 -1.6 37,523 + EX31_RS10620 0.19 +2.1 37,524 - EX31_RS10620 0.19 -0.9 37,664 - EX31_RS10620 0.60 +0.9 37,820 - +0.2 37,994 + EX31_RS10625 0.20 -0.9 38,003 + EX31_RS10625 0.21 +0.2 38,004 - EX31_RS10625 0.21 -0.3 38,004 - EX31_RS10625 0.21 -1.9 38,112 + EX31_RS10625 0.38 +1.1 38,161 - EX31_RS10625 0.46 +1.3 38,161 - EX31_RS10625 0.46 -0.3 38,161 - EX31_RS10625 0.46 +1.4 38,176 + EX31_RS10625 0.48 +0.7 38,185 - EX31_RS10625 0.50 +1.3 38,185 - EX31_RS10625 0.50 +1.1 38,185 - EX31_RS10625 0.50 -0.5 38,185 - EX31_RS10625 0.50 -0.7 38,292 + EX31_RS10625 0.66 -0.2 38,293 - EX31_RS10625 0.66 +0.2 38,442 + EX31_RS10625 0.90 +0.3 38,621 - +0.6 38,624 - +0.1 38,624 - -0.2 38,624 - -0.6 38,624 - -0.3 38,624 - -1.4 38,637 + +0.7 38,638 - +0.5 38,638 - +1.9 38,638 - -1.1 38,638 - +0.4 38,685 + +0.7 38,696 + +0.3 38,701 + +1.7 38,701 + +2.3 38,701 + +0.7 39,127 - EX31_RS10630 0.28 -1.6
Or see this region's nucleotide sequence