Strain Fitness in Rahnella sp. WP5 around EX31_RS09960

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09955 and EX31_RS09960 are separated by 1 nucleotidesEX31_RS09960 and EX31_RS09965 are separated by 11 nucleotides EX31_RS09955: EX31_RS09955 - anthranilate synthase component 1, at 199,984 to 201,546 _RS09955 EX31_RS09960: EX31_RS09960 - glutamine amidotransferase, at 201,548 to 202,126 _RS09960 EX31_RS09965: EX31_RS09965 - anthranilate phosphoribosyltransferase, at 202,138 to 203,151 _RS09965 Position (kb) 201 202 203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 200.640 kb on - strand, within EX31_RS09955at 200.640 kb on - strand, within EX31_RS09955at 200.729 kb on + strand, within EX31_RS09955at 200.729 kb on + strand, within EX31_RS09955at 200.729 kb on + strand, within EX31_RS09955at 200.842 kb on - strand, within EX31_RS09955at 200.842 kb on - strand, within EX31_RS09955at 200.858 kb on - strand, within EX31_RS09955at 200.858 kb on - strand, within EX31_RS09955at 200.858 kb on - strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.859 kb on + strand, within EX31_RS09955at 200.860 kb on - strand, within EX31_RS09955at 200.860 kb on - strand, within EX31_RS09955at 200.860 kb on - strand, within EX31_RS09955at 200.860 kb on - strand, within EX31_RS09955at 200.923 kb on + strand, within EX31_RS09955at 200.954 kb on - strand, within EX31_RS09955at 201.052 kb on - strand, within EX31_RS09955at 201.108 kb on + strand, within EX31_RS09955at 201.109 kb on - strand, within EX31_RS09955at 201.147 kb on + strand, within EX31_RS09955at 201.222 kb on - strand, within EX31_RS09955at 201.222 kb on - strand, within EX31_RS09955at 201.222 kb on - strand, within EX31_RS09955at 201.232 kb on + strand, within EX31_RS09955at 201.233 kb on - strand, within EX31_RS09955at 201.346 kb on + strand, within EX31_RS09955at 201.347 kb on - strand, within EX31_RS09955at 201.368 kb on + strand, within EX31_RS09955at 201.368 kb on + strand, within EX31_RS09955at 201.372 kb on + strand, within EX31_RS09955at 201.398 kb on - strandat 201.398 kb on - strandat 201.398 kb on - strandat 201.483 kb on + strandat 201.486 kb on + strandat 201.486 kb on + strandat 201.540 kb on - strandat 201.544 kb on + strandat 201.544 kb on + strandat 201.545 kb on - strandat 201.545 kb on - strandat 201.562 kb on - strandat 201.562 kb on - strandat 201.562 kb on - strandat 201.562 kb on - strandat 201.587 kb on - strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.590 kb on + strandat 201.591 kb on - strandat 201.591 kb on - strandat 201.591 kb on - strandat 201.591 kb on - strandat 201.591 kb on - strandat 201.625 kb on + strand, within EX31_RS09960at 201.626 kb on - strand, within EX31_RS09960at 201.626 kb on - strand, within EX31_RS09960at 201.626 kb on - strand, within EX31_RS09960at 201.626 kb on - strand, within EX31_RS09960at 201.626 kb on - strand, within EX31_RS09960at 201.626 kb on - strand, within EX31_RS09960at 201.638 kb on + strand, within EX31_RS09960at 201.827 kb on + strand, within EX31_RS09960at 201.880 kb on + strand, within EX31_RS09960at 201.880 kb on + strand, within EX31_RS09960at 201.880 kb on + strand, within EX31_RS09960at 201.880 kb on + strand, within EX31_RS09960at 201.881 kb on - strand, within EX31_RS09960at 201.883 kb on + strand, within EX31_RS09960at 201.883 kb on + strand, within EX31_RS09960at 202.004 kb on - strand, within EX31_RS09960at 202.017 kb on + strand, within EX31_RS09960at 202.018 kb on - strand, within EX31_RS09960at 202.152 kb on + strandat 202.153 kb on - strandat 202.217 kb on + strandat 202.218 kb on - strandat 202.218 kb on - strandat 202.419 kb on + strand, within EX31_RS09965at 202.419 kb on + strand, within EX31_RS09965at 202.420 kb on - strand, within EX31_RS09965at 202.518 kb on - strand, within EX31_RS09965at 202.647 kb on + strand, within EX31_RS09965at 202.732 kb on + strand, within EX31_RS09965at 202.783 kb on + strand, within EX31_RS09965at 202.874 kb on + strand, within EX31_RS09965at 202.882 kb on + strand, within EX31_RS09965at 202.882 kb on + strand, within EX31_RS09965at 202.882 kb on + strand, within EX31_RS09965at 202.914 kb on + strand, within EX31_RS09965at 202.914 kb on + strand, within EX31_RS09965at 202.918 kb on + strand, within EX31_RS09965at 202.918 kb on + strand, within EX31_RS09965at 202.926 kb on - strand, within EX31_RS09965at 202.979 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.989 kb on + strand, within EX31_RS09965at 203.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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200,640 - EX31_RS09955 0.42 -0.4
200,640 - EX31_RS09955 0.42 -0.4
200,729 + EX31_RS09955 0.48 -0.0
200,729 + EX31_RS09955 0.48 -2.0
200,729 + EX31_RS09955 0.48 -1.0
200,842 - EX31_RS09955 0.55 -1.4
200,842 - EX31_RS09955 0.55 -1.0
200,858 - EX31_RS09955 0.56 +0.6
200,858 - EX31_RS09955 0.56 -1.0
200,858 - EX31_RS09955 0.56 -0.7
200,859 + EX31_RS09955 0.56 -2.7
200,859 + EX31_RS09955 0.56 -0.4
200,859 + EX31_RS09955 0.56 -1.0
200,859 + EX31_RS09955 0.56 -2.4
200,859 + EX31_RS09955 0.56 -1.3
200,859 + EX31_RS09955 0.56 -1.4
200,859 + EX31_RS09955 0.56 -2.2
200,859 + EX31_RS09955 0.56 -1.0
200,859 + EX31_RS09955 0.56 -3.2
200,859 + EX31_RS09955 0.56 -2.7
200,859 + EX31_RS09955 0.56 -1.6
200,860 - EX31_RS09955 0.56 -1.7
200,860 - EX31_RS09955 0.56 -1.4
200,860 - EX31_RS09955 0.56 +0.6
200,860 - EX31_RS09955 0.56 +0.9
200,923 + EX31_RS09955 0.60 -0.8
200,954 - EX31_RS09955 0.62 +0.2
201,052 - EX31_RS09955 0.68 -0.4
201,108 + EX31_RS09955 0.72 -2.6
201,109 - EX31_RS09955 0.72 -1.2
201,147 + EX31_RS09955 0.74 -0.4
201,222 - EX31_RS09955 0.79 -2.9
201,222 - EX31_RS09955 0.79 -2.9
201,222 - EX31_RS09955 0.79 -0.4
201,232 + EX31_RS09955 0.80 -2.4
201,233 - EX31_RS09955 0.80 -2.4
201,346 + EX31_RS09955 0.87 -1.0
201,347 - EX31_RS09955 0.87 -1.9
201,368 + EX31_RS09955 0.89 -1.7
201,368 + EX31_RS09955 0.89 -1.4
201,372 + EX31_RS09955 0.89 +0.6
201,398 - -1.4
201,398 - -1.7
201,398 - -2.9
201,483 + -2.4
201,486 + -1.7
201,486 + -1.7
201,540 - -0.7
201,544 + -1.7
201,544 + -2.9
201,545 - -1.4
201,545 - -1.7
201,562 - -0.4
201,562 - -1.4
201,562 - -3.1
201,562 - -1.6
201,587 - -1.0
201,590 + -3.1
201,590 + -2.6
201,590 + -1.0
201,590 + -0.2
201,590 + -3.1
201,590 + -1.7
201,590 + -1.0
201,590 + -3.7
201,590 + -2.0
201,590 + -1.0
201,590 + -2.2
201,591 - -0.4
201,591 - -3.0
201,591 - +0.6
201,591 - -1.3
201,591 - -2.7
201,625 + EX31_RS09960 0.13 -1.7
201,626 - EX31_RS09960 0.13 -0.4
201,626 - EX31_RS09960 0.13 -0.4
201,626 - EX31_RS09960 0.13 -1.7
201,626 - EX31_RS09960 0.13 -1.6
201,626 - EX31_RS09960 0.13 -2.1
201,626 - EX31_RS09960 0.13 -2.0
201,638 + EX31_RS09960 0.16 -2.6
201,827 + EX31_RS09960 0.48 -2.0
201,880 + EX31_RS09960 0.57 -1.4
201,880 + EX31_RS09960 0.57 -3.3
201,880 + EX31_RS09960 0.57 -3.1
201,880 + EX31_RS09960 0.57 -3.0
201,881 - EX31_RS09960 0.58 -2.2
201,883 + EX31_RS09960 0.58 -3.9
201,883 + EX31_RS09960 0.58 -2.6
202,004 - EX31_RS09960 0.79 -1.0
202,017 + EX31_RS09960 0.81 -1.4
202,018 - EX31_RS09960 0.81 -2.0
202,152 + -2.7
202,153 - -3.0
202,217 + -2.2
202,218 - -3.4
202,218 - -2.4
202,419 + EX31_RS09965 0.28 -1.4
202,419 + EX31_RS09965 0.28 -3.0
202,420 - EX31_RS09965 0.28 -1.0
202,518 - EX31_RS09965 0.37 -0.4
202,647 + EX31_RS09965 0.50 -2.9
202,732 + EX31_RS09965 0.59 -3.8
202,783 + EX31_RS09965 0.64 -2.2
202,874 + EX31_RS09965 0.73 +0.6
202,882 + EX31_RS09965 0.73 -2.7
202,882 + EX31_RS09965 0.73 +0.6
202,882 + EX31_RS09965 0.73 -2.6
202,914 + EX31_RS09965 0.77 -3.0
202,914 + EX31_RS09965 0.77 -2.6
202,918 + EX31_RS09965 0.77 -0.4
202,918 + EX31_RS09965 0.77 -2.4
202,926 - EX31_RS09965 0.78 -1.4
202,979 + EX31_RS09965 0.83 -2.0
202,982 + EX31_RS09965 0.83 -1.7
202,982 + EX31_RS09965 0.83 -2.6
202,982 + EX31_RS09965 0.83 -0.2
202,982 + EX31_RS09965 0.83 -2.2
202,982 + EX31_RS09965 0.83 -2.4
202,982 + EX31_RS09965 0.83 -3.3
202,982 + EX31_RS09965 0.83 -1.7
202,982 + EX31_RS09965 0.83 -1.7
202,983 - EX31_RS09965 0.83 -1.0
202,983 - EX31_RS09965 0.83 -1.0
202,983 - EX31_RS09965 0.83 -1.4
202,983 - EX31_RS09965 0.83 -0.8
202,989 + EX31_RS09965 0.84 -1.4
203,116 + -0.7

Or see this region's nucleotide sequence