Strain Fitness in Rahnella sp. WP5 around EX31_RS09940

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09930 and EX31_RS09935 are separated by 25 nucleotidesEX31_RS09935 and EX31_RS09940 are separated by 148 nucleotidesEX31_RS09940 and EX31_RS09945 are separated by 198 nucleotidesEX31_RS09945 and EX31_RS09950 are separated by 34 nucleotides EX31_RS09930: EX31_RS09930 - adenosylcobinamide-GDP ribazoletransferase, at 194,916 to 195,668 _RS09930 EX31_RS09935: EX31_RS09935 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 195,694 to 196,248 _RS09935 EX31_RS09940: EX31_RS09940 - 23S rRNA pseudouridine(2605) synthase RluB, at 196,397 to 197,716 _RS09940 EX31_RS09945: EX31_RS09945 - threonylcarbamoyl-AMP synthase, at 197,915 to 198,535 _RS09945 EX31_RS09950: EX31_RS09950 - PHP domain-containing protein, at 198,570 to 199,493 _RS09950 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 195.427 kb on - strand, within EX31_RS09930at 195.427 kb on - strand, within EX31_RS09930at 195.427 kb on - strand, within EX31_RS09930at 195.444 kb on - strand, within EX31_RS09930at 195.446 kb on + strand, within EX31_RS09930at 195.446 kb on + strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.574 kb on + strand, within EX31_RS09930at 195.574 kb on + strand, within EX31_RS09930at 195.574 kb on + strand, within EX31_RS09930at 195.575 kb on - strand, within EX31_RS09930at 195.575 kb on - strand, within EX31_RS09930at 195.575 kb on - strand, within EX31_RS09930at 195.661 kb on - strandat 195.671 kb on + strandat 195.672 kb on - strandat 195.672 kb on - strandat 195.695 kb on + strandat 195.696 kb on - strandat 195.741 kb on - strandat 195.741 kb on - strandat 195.741 kb on - strandat 195.790 kb on - strand, within EX31_RS09935at 195.926 kb on - strand, within EX31_RS09935at 196.014 kb on + strand, within EX31_RS09935at 196.080 kb on + strand, within EX31_RS09935at 196.081 kb on - strand, within EX31_RS09935at 196.143 kb on + strand, within EX31_RS09935at 196.143 kb on + strand, within EX31_RS09935at 196.144 kb on - strand, within EX31_RS09935at 196.148 kb on - strand, within EX31_RS09935at 196.163 kb on + strand, within EX31_RS09935at 196.163 kb on + strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.216 kb on - strandat 196.240 kb on + strandat 196.249 kb on - strandat 196.267 kb on + strandat 196.267 kb on + strandat 196.270 kb on + strandat 196.280 kb on + strandat 196.280 kb on + strandat 196.312 kb on + strandat 196.369 kb on + strandat 196.370 kb on - strandat 196.448 kb on - strandat 196.484 kb on + strandat 196.558 kb on - strand, within EX31_RS09940at 196.558 kb on - strand, within EX31_RS09940at 196.558 kb on - strand, within EX31_RS09940at 196.558 kb on - strand, within EX31_RS09940at 196.586 kb on - strand, within EX31_RS09940at 196.588 kb on - strand, within EX31_RS09940at 196.723 kb on - strand, within EX31_RS09940at 196.723 kb on - strand, within EX31_RS09940at 196.723 kb on - strand, within EX31_RS09940at 196.847 kb on + strand, within EX31_RS09940at 196.848 kb on - strand, within EX31_RS09940at 196.855 kb on - strand, within EX31_RS09940at 196.920 kb on - strand, within EX31_RS09940at 196.956 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.056 kb on - strand, within EX31_RS09940at 197.059 kb on - strand, within EX31_RS09940at 197.059 kb on - strand, within EX31_RS09940at 197.059 kb on - strand, within EX31_RS09940at 197.059 kb on - strand, within EX31_RS09940at 197.059 kb on - strand, within EX31_RS09940at 197.059 kb on - strand, within EX31_RS09940at 197.311 kb on - strand, within EX31_RS09940at 197.360 kb on - strand, within EX31_RS09940at 197.360 kb on - strand, within EX31_RS09940at 197.360 kb on - strand, within EX31_RS09940at 197.449 kb on + strand, within EX31_RS09940at 197.449 kb on + strand, within EX31_RS09940at 197.450 kb on - strand, within EX31_RS09940at 197.564 kb on - strand, within EX31_RS09940at 197.702 kb on - strandat 197.702 kb on - strandat 197.703 kb on + strandat 197.704 kb on - strandat 197.815 kb on + strandat 197.848 kb on - strandat 197.857 kb on + strandat 197.857 kb on + strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.860 kb on - strandat 198.188 kb on - strand, within EX31_RS09945at 198.246 kb on + strand, within EX31_RS09945at 198.247 kb on - strand, within EX31_RS09945at 198.298 kb on - strand, within EX31_RS09945at 198.298 kb on - strand, within EX31_RS09945at 198.298 kb on - strand, within EX31_RS09945at 198.303 kb on + strand, within EX31_RS09945at 198.303 kb on + strand, within EX31_RS09945at 198.303 kb on + strand, within EX31_RS09945at 198.304 kb on - strand, within EX31_RS09945at 198.304 kb on - strand, within EX31_RS09945at 198.347 kb on - strand, within EX31_RS09945at 198.347 kb on - strand, within EX31_RS09945at 198.379 kb on + strand, within EX31_RS09945at 198.379 kb on + strand, within EX31_RS09945at 198.380 kb on - strand, within EX31_RS09945at 198.380 kb on - strand, within EX31_RS09945at 198.484 kb on + strandat 198.517 kb on + strandat 198.518 kb on - strandat 198.518 kb on - strandat 198.526 kb on - strandat 198.546 kb on + strandat 198.547 kb on - strandat 198.631 kb on - strandat 198.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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195,427 - EX31_RS09930 0.68 +2.0
195,427 - EX31_RS09930 0.68 -1.0
195,427 - EX31_RS09930 0.68 +1.7
195,444 - EX31_RS09930 0.70 -0.4
195,446 + EX31_RS09930 0.70 -0.7
195,446 + EX31_RS09930 0.70 +0.6
195,447 - EX31_RS09930 0.71 +0.6
195,447 - EX31_RS09930 0.71 -1.1
195,447 - EX31_RS09930 0.71 +0.8
195,447 - EX31_RS09930 0.71 +1.3
195,574 + EX31_RS09930 0.87 +0.3
195,574 + EX31_RS09930 0.87 -0.4
195,574 + EX31_RS09930 0.87 +2.6
195,575 - EX31_RS09930 0.88 +0.4
195,575 - EX31_RS09930 0.88 +0.6
195,575 - EX31_RS09930 0.88 -0.0
195,661 - -0.3
195,671 + +1.6
195,672 - -0.1
195,672 - +0.1
195,695 + +0.2
195,696 - -0.1
195,741 - +0.3
195,741 - -0.5
195,741 - +1.9
195,790 - EX31_RS09935 0.17 +0.3
195,926 - EX31_RS09935 0.42 -1.2
196,014 + EX31_RS09935 0.58 +0.2
196,080 + EX31_RS09935 0.70 -1.0
196,081 - EX31_RS09935 0.70 +0.2
196,143 + EX31_RS09935 0.81 +0.4
196,143 + EX31_RS09935 0.81 -0.3
196,144 - EX31_RS09935 0.81 -0.4
196,148 - EX31_RS09935 0.82 +0.6
196,163 + EX31_RS09935 0.85 +0.6
196,163 + EX31_RS09935 0.85 +0.8
196,164 - EX31_RS09935 0.85 -0.6
196,164 - EX31_RS09935 0.85 +2.6
196,164 - EX31_RS09935 0.85 -0.2
196,164 - EX31_RS09935 0.85 +0.3
196,164 - EX31_RS09935 0.85 -0.4
196,216 - +0.6
196,240 + +1.0
196,249 - -0.0
196,267 + -0.7
196,267 + +1.0
196,270 + -0.7
196,280 + +0.6
196,280 + -1.0
196,312 + +0.6
196,369 + +0.8
196,370 - -0.1
196,448 - +0.2
196,484 + -0.4
196,558 - EX31_RS09940 0.12 -1.7
196,558 - EX31_RS09940 0.12 -0.4
196,558 - EX31_RS09940 0.12 -0.7
196,558 - EX31_RS09940 0.12 -0.2
196,586 - EX31_RS09940 0.14 -1.0
196,588 - EX31_RS09940 0.14 +2.2
196,723 - EX31_RS09940 0.25 -0.8
196,723 - EX31_RS09940 0.25 -1.5
196,723 - EX31_RS09940 0.25 +0.4
196,847 + EX31_RS09940 0.34 -0.5
196,848 - EX31_RS09940 0.34 +1.6
196,855 - EX31_RS09940 0.35 -1.4
196,920 - EX31_RS09940 0.40 -0.4
196,956 - EX31_RS09940 0.42 -1.0
197,056 - EX31_RS09940 0.50 -1.0
197,056 - EX31_RS09940 0.50 -1.0
197,056 - EX31_RS09940 0.50 -0.4
197,056 - EX31_RS09940 0.50 +0.6
197,056 - EX31_RS09940 0.50 -0.4
197,056 - EX31_RS09940 0.50 +1.2
197,056 - EX31_RS09940 0.50 +1.0
197,056 - EX31_RS09940 0.50 -0.8
197,056 - EX31_RS09940 0.50 +0.6
197,059 - EX31_RS09940 0.50 -2.9
197,059 - EX31_RS09940 0.50 -1.0
197,059 - EX31_RS09940 0.50 -0.6
197,059 - EX31_RS09940 0.50 -0.2
197,059 - EX31_RS09940 0.50 -0.8
197,059 - EX31_RS09940 0.50 -1.0
197,311 - EX31_RS09940 0.69 +2.0
197,360 - EX31_RS09940 0.73 -0.4
197,360 - EX31_RS09940 0.73 -1.4
197,360 - EX31_RS09940 0.73 -0.4
197,449 + EX31_RS09940 0.80 +0.3
197,449 + EX31_RS09940 0.80 -1.4
197,450 - EX31_RS09940 0.80 -0.0
197,564 - EX31_RS09940 0.88 +1.2
197,702 - -1.9
197,702 - -0.2
197,703 + -1.6
197,704 - -0.4
197,815 + +0.6
197,848 - +0.6
197,857 + -2.7
197,857 + +0.6
197,858 - -1.9
197,858 - +1.5
197,858 - -2.0
197,858 - +0.2
197,858 - -1.4
197,858 - +0.6
197,858 - -1.4
197,860 - +1.6
198,188 - EX31_RS09945 0.44 -0.8
198,246 + EX31_RS09945 0.53 +1.2
198,247 - EX31_RS09945 0.53 -0.7
198,298 - EX31_RS09945 0.62 +1.2
198,298 - EX31_RS09945 0.62 -0.3
198,298 - EX31_RS09945 0.62 -1.0
198,303 + EX31_RS09945 0.62 -0.4
198,303 + EX31_RS09945 0.62 +1.3
198,303 + EX31_RS09945 0.62 +0.1
198,304 - EX31_RS09945 0.63 +0.9
198,304 - EX31_RS09945 0.63 -1.4
198,347 - EX31_RS09945 0.70 +2.2
198,347 - EX31_RS09945 0.70 +0.6
198,379 + EX31_RS09945 0.75 +0.8
198,379 + EX31_RS09945 0.75 -1.0
198,380 - EX31_RS09945 0.75 +0.8
198,380 - EX31_RS09945 0.75 -1.0
198,484 + +1.6
198,517 + +1.2
198,518 - +0.6
198,518 - +0.8
198,526 - -0.3
198,546 + -0.2
198,547 - -1.5
198,631 - +1.9
198,631 - -1.7

Or see this region's nucleotide sequence