Strain Fitness in Rahnella sp. WP5 around EX31_RS09775

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09770 and EX31_RS09775 are separated by 197 nucleotidesEX31_RS09775 and EX31_RS09780 are separated by 3 nucleotidesEX31_RS09780 and EX31_RS09785 are separated by 19 nucleotides EX31_RS09770: EX31_RS09770 - xylulokinase, at 159,592 to 161,043 _RS09770 EX31_RS09775: EX31_RS09775 - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 161,241 to 161,531 _RS09775 EX31_RS09780: EX31_RS09780 - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 161,535 to 162,410 _RS09780 EX31_RS09785: EX31_RS09785 - autoinducer 2 ABC transporter substrate-binding protein LsrB, at 162,430 to 163,446 _RS09785 Position (kb) 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 160.323 kb on + strand, within EX31_RS09770at 160.324 kb on - strand, within EX31_RS09770at 160.344 kb on - strand, within EX31_RS09770at 160.367 kb on - strand, within EX31_RS09770at 160.585 kb on + strand, within EX31_RS09770at 160.586 kb on - strand, within EX31_RS09770at 160.611 kb on + strand, within EX31_RS09770at 160.685 kb on + strand, within EX31_RS09770at 160.685 kb on + strand, within EX31_RS09770at 160.883 kb on + strand, within EX31_RS09770at 160.883 kb on + strand, within EX31_RS09770at 160.952 kb on + strandat 160.952 kb on + strandat 160.952 kb on + strandat 160.953 kb on - strandat 160.977 kb on + strandat 160.978 kb on - strandat 160.984 kb on + strandat 160.984 kb on + strandat 161.015 kb on + strandat 161.015 kb on + strandat 161.015 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.041 kb on + strandat 161.041 kb on + strandat 161.041 kb on + strandat 161.045 kb on - strandat 161.045 kb on - strandat 161.045 kb on - strandat 161.188 kb on + strandat 161.188 kb on + strandat 161.192 kb on - strandat 161.237 kb on + strandat 161.251 kb on - strandat 161.258 kb on + strandat 161.289 kb on - strand, within EX31_RS09775at 161.321 kb on - strand, within EX31_RS09775at 161.366 kb on - strand, within EX31_RS09775at 161.375 kb on - strand, within EX31_RS09775at 161.470 kb on - strand, within EX31_RS09775at 161.563 kb on + strandat 161.564 kb on - strandat 161.794 kb on + strand, within EX31_RS09780at 161.794 kb on + strand, within EX31_RS09780at 161.798 kb on - strand, within EX31_RS09780at 161.798 kb on - strand, within EX31_RS09780at 161.798 kb on - strand, within EX31_RS09780at 161.855 kb on - strand, within EX31_RS09780at 161.968 kb on + strand, within EX31_RS09780at 161.968 kb on + strand, within EX31_RS09780at 161.969 kb on - strand, within EX31_RS09780at 161.983 kb on + strand, within EX31_RS09780at 161.983 kb on + strand, within EX31_RS09780at 161.983 kb on + strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 162.097 kb on - strand, within EX31_RS09780at 162.441 kb on - strandat 162.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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160,323 + EX31_RS09770 0.50 -1.2
160,324 - EX31_RS09770 0.50 +0.8
160,344 - EX31_RS09770 0.52 -0.2
160,367 - EX31_RS09770 0.53 +0.8
160,585 + EX31_RS09770 0.68 +1.6
160,586 - EX31_RS09770 0.68 -0.6
160,611 + EX31_RS09770 0.70 +1.6
160,685 + EX31_RS09770 0.75 -0.7
160,685 + EX31_RS09770 0.75 +0.8
160,883 + EX31_RS09770 0.89 -0.2
160,883 + EX31_RS09770 0.89 +2.0
160,952 + -1.0
160,952 + +0.3
160,952 + +0.6
160,953 - +0.6
160,977 + +0.6
160,978 - +1.3
160,984 + +0.8
160,984 + +0.3
161,015 + -0.5
161,015 + +0.2
161,015 + -1.4
161,017 + -0.4
161,017 + -1.0
161,017 + +0.2
161,017 + -0.3
161,017 + -0.0
161,017 + -1.0
161,017 + -1.0
161,018 - +2.6
161,018 - -0.1
161,018 - +0.8
161,018 - -0.2
161,018 - +0.6
161,018 - -0.6
161,018 - +0.6
161,041 + -2.9
161,041 + -1.0
161,041 + -1.2
161,045 - -1.0
161,045 - -0.5
161,045 - +2.6
161,188 + +1.9
161,188 + -0.4
161,192 - +1.2
161,237 + +0.2
161,251 - +2.2
161,258 + -1.0
161,289 - EX31_RS09775 0.16 -1.0
161,321 - EX31_RS09775 0.27 -0.4
161,366 - EX31_RS09775 0.43 -1.4
161,375 - EX31_RS09775 0.46 -0.7
161,470 - EX31_RS09775 0.79 -1.0
161,563 + +0.4
161,564 - -0.8
161,794 + EX31_RS09780 0.30 +1.6
161,794 + EX31_RS09780 0.30 -1.0
161,798 - EX31_RS09780 0.30 -0.2
161,798 - EX31_RS09780 0.30 +0.3
161,798 - EX31_RS09780 0.30 +1.6
161,855 - EX31_RS09780 0.37 +0.2
161,968 + EX31_RS09780 0.49 +0.6
161,968 + EX31_RS09780 0.49 +1.2
161,969 - EX31_RS09780 0.50 +1.4
161,983 + EX31_RS09780 0.51 -0.0
161,983 + EX31_RS09780 0.51 -1.7
161,983 + EX31_RS09780 0.51 +0.3
161,984 - EX31_RS09780 0.51 +1.9
161,984 - EX31_RS09780 0.51 -1.4
161,984 - EX31_RS09780 0.51 +0.6
161,984 - EX31_RS09780 0.51 +2.2
161,984 - EX31_RS09780 0.51 +1.6
161,984 - EX31_RS09780 0.51 +1.2
161,984 - EX31_RS09780 0.51 -1.2
161,984 - EX31_RS09780 0.51 +0.9
162,097 - EX31_RS09780 0.64 -0.4
162,441 - +1.6
162,499 - +1.4

Or see this region's nucleotide sequence