Strain Fitness in Rahnella sp. WP5 around EX31_RS09770

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09765 and EX31_RS09770 are separated by 91 nucleotidesEX31_RS09770 and EX31_RS09775 are separated by 197 nucleotidesEX31_RS09775 and EX31_RS09780 are separated by 3 nucleotides EX31_RS09765: EX31_RS09765 - xylose isomerase, at 158,181 to 159,500 _RS09765 EX31_RS09770: EX31_RS09770 - xylulokinase, at 159,592 to 161,043 _RS09770 EX31_RS09775: EX31_RS09775 - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 161,241 to 161,531 _RS09775 EX31_RS09780: EX31_RS09780 - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 161,535 to 162,410 _RS09780 Position (kb) 159 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.654 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.880 kb on - strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.907 kb on + strand, within EX31_RS09765at 158.908 kb on - strand, within EX31_RS09765at 158.908 kb on - strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.913 kb on + strand, within EX31_RS09765at 158.914 kb on - strand, within EX31_RS09765at 158.931 kb on + strand, within EX31_RS09765at 158.931 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.147 kb on + strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.148 kb on - strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.228 kb on + strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.229 kb on - strand, within EX31_RS09765at 159.240 kb on + strand, within EX31_RS09765at 159.339 kb on + strand, within EX31_RS09765at 159.340 kb on - strand, within EX31_RS09765at 159.411 kb on + strandat 159.511 kb on + strandat 159.580 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.592 kb on - strandat 159.592 kb on - strandat 159.592 kb on - strandat 159.596 kb on - strandat 159.605 kb on + strandat 159.638 kb on + strandat 159.794 kb on + strand, within EX31_RS09770at 159.795 kb on - strand, within EX31_RS09770at 159.795 kb on - strand, within EX31_RS09770at 159.857 kb on + strand, within EX31_RS09770at 159.860 kb on + strand, within EX31_RS09770at 159.860 kb on + strand, within EX31_RS09770at 159.861 kb on - strand, within EX31_RS09770at 160.054 kb on + strand, within EX31_RS09770at 160.055 kb on - strand, within EX31_RS09770at 160.092 kb on + strand, within EX31_RS09770at 160.092 kb on + strand, within EX31_RS09770at 160.093 kb on - strand, within EX31_RS09770at 160.093 kb on - strand, within EX31_RS09770at 160.132 kb on - strand, within EX31_RS09770at 160.323 kb on + strand, within EX31_RS09770at 160.324 kb on - strand, within EX31_RS09770at 160.344 kb on - strand, within EX31_RS09770at 160.367 kb on - strand, within EX31_RS09770at 160.585 kb on + strand, within EX31_RS09770at 160.586 kb on - strand, within EX31_RS09770at 160.611 kb on + strand, within EX31_RS09770at 160.685 kb on + strand, within EX31_RS09770at 160.685 kb on + strand, within EX31_RS09770at 160.883 kb on + strand, within EX31_RS09770at 160.883 kb on + strand, within EX31_RS09770at 160.952 kb on + strandat 160.952 kb on + strandat 160.952 kb on + strandat 160.953 kb on - strandat 160.977 kb on + strandat 160.978 kb on - strandat 160.984 kb on + strandat 160.984 kb on + strandat 161.015 kb on + strandat 161.015 kb on + strandat 161.015 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.017 kb on + strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.018 kb on - strandat 161.041 kb on + strandat 161.041 kb on + strandat 161.041 kb on + strandat 161.045 kb on - strandat 161.045 kb on - strandat 161.045 kb on - strandat 161.188 kb on + strandat 161.188 kb on + strandat 161.192 kb on - strandat 161.237 kb on + strandat 161.251 kb on - strandat 161.258 kb on + strandat 161.289 kb on - strand, within EX31_RS09775at 161.321 kb on - strand, within EX31_RS09775at 161.366 kb on - strand, within EX31_RS09775at 161.375 kb on - strand, within EX31_RS09775at 161.470 kb on - strand, within EX31_RS09775at 161.563 kb on + strandat 161.564 kb on - strandat 161.794 kb on + strand, within EX31_RS09780at 161.794 kb on + strand, within EX31_RS09780at 161.798 kb on - strand, within EX31_RS09780at 161.798 kb on - strand, within EX31_RS09780at 161.798 kb on - strand, within EX31_RS09780at 161.855 kb on - strand, within EX31_RS09780at 161.968 kb on + strand, within EX31_RS09780at 161.968 kb on + strand, within EX31_RS09780at 161.969 kb on - strand, within EX31_RS09780at 161.983 kb on + strand, within EX31_RS09780at 161.983 kb on + strand, within EX31_RS09780at 161.983 kb on + strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780at 161.984 kb on - strand, within EX31_RS09780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
158,601 - EX31_RS09765 0.32 +0.9
158,601 - EX31_RS09765 0.32 -0.4
158,601 - EX31_RS09765 0.32 -0.4
158,654 + EX31_RS09765 0.36 -1.2
158,733 + EX31_RS09765 0.42 +0.6
158,733 + EX31_RS09765 0.42 +0.4
158,733 + EX31_RS09765 0.42 +0.6
158,778 - EX31_RS09765 0.45 -0.4
158,778 - EX31_RS09765 0.45 -0.2
158,880 - EX31_RS09765 0.53 -0.8
158,907 + EX31_RS09765 0.55 +0.3
158,907 + EX31_RS09765 0.55 -0.3
158,907 + EX31_RS09765 0.55 +0.3
158,907 + EX31_RS09765 0.55 -0.2
158,907 + EX31_RS09765 0.55 +1.6
158,908 - EX31_RS09765 0.55 +1.9
158,908 - EX31_RS09765 0.55 -1.4
158,913 + EX31_RS09765 0.55 +0.9
158,913 + EX31_RS09765 0.55 +1.2
158,913 + EX31_RS09765 0.55 -0.4
158,914 - EX31_RS09765 0.56 +0.6
158,931 + EX31_RS09765 0.57 -0.4
158,931 + EX31_RS09765 0.57 -0.4
159,147 + EX31_RS09765 0.73 -0.4
159,147 + EX31_RS09765 0.73 -0.2
159,147 + EX31_RS09765 0.73 -0.6
159,148 - EX31_RS09765 0.73 -1.7
159,148 - EX31_RS09765 0.73 +0.6
159,148 - EX31_RS09765 0.73 +0.6
159,228 + EX31_RS09765 0.79 +0.2
159,228 + EX31_RS09765 0.79 -0.2
159,228 + EX31_RS09765 0.79 +0.9
159,228 + EX31_RS09765 0.79 +0.8
159,228 + EX31_RS09765 0.79 +2.0
159,229 - EX31_RS09765 0.79 +2.9
159,229 - EX31_RS09765 0.79 -1.0
159,229 - EX31_RS09765 0.79 +1.6
159,229 - EX31_RS09765 0.79 -1.4
159,240 + EX31_RS09765 0.80 +1.2
159,339 + EX31_RS09765 0.88 -0.4
159,340 - EX31_RS09765 0.88 +0.6
159,411 + +0.6
159,511 + -0.0
159,580 + -0.7
159,591 + +0.6
159,591 + +0.1
159,591 + +1.6
159,591 + -1.4
159,591 + +0.4
159,592 - -1.0
159,592 - +0.6
159,592 - -0.0
159,596 - +0.3
159,605 + +0.2
159,638 + -1.0
159,794 + EX31_RS09770 0.14 -1.1
159,795 - EX31_RS09770 0.14 -2.7
159,795 - EX31_RS09770 0.14 +0.5
159,857 + EX31_RS09770 0.18 -0.4
159,860 + EX31_RS09770 0.18 -0.4
159,860 + EX31_RS09770 0.18 +1.8
159,861 - EX31_RS09770 0.19 +1.6
160,054 + EX31_RS09770 0.32 +0.7
160,055 - EX31_RS09770 0.32 +2.0
160,092 + EX31_RS09770 0.34 +0.7
160,092 + EX31_RS09770 0.34 -0.7
160,093 - EX31_RS09770 0.35 +0.2
160,093 - EX31_RS09770 0.35 -0.0
160,132 - EX31_RS09770 0.37 -1.4
160,323 + EX31_RS09770 0.50 -1.2
160,324 - EX31_RS09770 0.50 +0.8
160,344 - EX31_RS09770 0.52 -0.2
160,367 - EX31_RS09770 0.53 +0.8
160,585 + EX31_RS09770 0.68 +1.6
160,586 - EX31_RS09770 0.68 -0.6
160,611 + EX31_RS09770 0.70 +1.6
160,685 + EX31_RS09770 0.75 -0.7
160,685 + EX31_RS09770 0.75 +0.8
160,883 + EX31_RS09770 0.89 -0.2
160,883 + EX31_RS09770 0.89 +2.0
160,952 + -1.0
160,952 + +0.3
160,952 + +0.6
160,953 - +0.6
160,977 + +0.6
160,978 - +1.3
160,984 + +0.8
160,984 + +0.3
161,015 + -0.5
161,015 + +0.2
161,015 + -1.4
161,017 + -0.4
161,017 + -1.0
161,017 + +0.2
161,017 + -0.3
161,017 + -0.0
161,017 + -1.0
161,017 + -1.0
161,018 - +2.6
161,018 - -0.1
161,018 - +0.8
161,018 - -0.2
161,018 - +0.6
161,018 - -0.6
161,018 - +0.6
161,041 + -2.9
161,041 + -1.0
161,041 + -1.2
161,045 - -1.0
161,045 - -0.5
161,045 - +2.6
161,188 + +1.9
161,188 + -0.4
161,192 - +1.2
161,237 + +0.2
161,251 - +2.2
161,258 + -1.0
161,289 - EX31_RS09775 0.16 -1.0
161,321 - EX31_RS09775 0.27 -0.4
161,366 - EX31_RS09775 0.43 -1.4
161,375 - EX31_RS09775 0.46 -0.7
161,470 - EX31_RS09775 0.79 -1.0
161,563 + +0.4
161,564 - -0.8
161,794 + EX31_RS09780 0.30 +1.6
161,794 + EX31_RS09780 0.30 -1.0
161,798 - EX31_RS09780 0.30 -0.2
161,798 - EX31_RS09780 0.30 +0.3
161,798 - EX31_RS09780 0.30 +1.6
161,855 - EX31_RS09780 0.37 +0.2
161,968 + EX31_RS09780 0.49 +0.6
161,968 + EX31_RS09780 0.49 +1.2
161,969 - EX31_RS09780 0.50 +1.4
161,983 + EX31_RS09780 0.51 -0.0
161,983 + EX31_RS09780 0.51 -1.7
161,983 + EX31_RS09780 0.51 +0.3
161,984 - EX31_RS09780 0.51 +1.9
161,984 - EX31_RS09780 0.51 -1.4
161,984 - EX31_RS09780 0.51 +0.6
161,984 - EX31_RS09780 0.51 +2.2
161,984 - EX31_RS09780 0.51 +1.6
161,984 - EX31_RS09780 0.51 +1.2
161,984 - EX31_RS09780 0.51 -1.2
161,984 - EX31_RS09780 0.51 +0.9

Or see this region's nucleotide sequence