Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09640 and EX31_RS09645 are separated by 18 nucleotides EX31_RS09645 and EX31_RS09650 are separated by 285 nucleotides EX31_RS09650 and EX31_RS09655 are separated by 78 nucleotides
EX31_RS09640: EX31_RS09640 - 30S ribosomal protein S6--L-glutamate ligase, at 130,481 to 131,383
_RS09640
EX31_RS09645: EX31_RS09645 - oxygen-insensitive NADPH nitroreductase, at 131,402 to 132,124
_RS09645
EX31_RS09650: EX31_RS09650 - GrxA family glutaredoxin, at 132,410 to 132,676
_RS09650
EX31_RS09655: EX31_RS09655 - membrane protein, at 132,755 to 133,126
_RS09655
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 130.406 kb on + strand at 130.406 kb on + strand at 130.406 kb on + strand at 130.406 kb on + strand at 130.406 kb on + strand at 130.407 kb on - strand at 130.407 kb on - strand at 130.407 kb on - strand at 130.419 kb on - strand at 130.435 kb on - strand at 130.462 kb on + strand at 130.462 kb on + strand at 130.529 kb on - strand at 130.529 kb on - strand at 130.530 kb on + strand at 130.531 kb on - strand at 130.601 kb on - strand, within EX31_RS09640 at 130.634 kb on + strand, within EX31_RS09640 at 130.848 kb on + strand, within EX31_RS09640 at 130.848 kb on + strand, within EX31_RS09640 at 130.849 kb on - strand, within EX31_RS09640 at 130.849 kb on - strand, within EX31_RS09640 at 130.849 kb on - strand, within EX31_RS09640 at 130.849 kb on - strand, within EX31_RS09640 at 130.849 kb on - strand, within EX31_RS09640 at 130.849 kb on - strand, within EX31_RS09640 at 131.024 kb on - strand, within EX31_RS09640 at 131.170 kb on - strand, within EX31_RS09640 at 131.211 kb on + strand, within EX31_RS09640 at 131.212 kb on - strand, within EX31_RS09640 at 131.212 kb on - strand, within EX31_RS09640 at 131.212 kb on - strand, within EX31_RS09640 at 131.212 kb on - strand, within EX31_RS09640 at 131.212 kb on - strand, within EX31_RS09640 at 131.212 kb on - strand, within EX31_RS09640 at 131.235 kb on + strand, within EX31_RS09640 at 131.263 kb on + strand, within EX31_RS09640 at 131.272 kb on - strand, within EX31_RS09640 at 131.272 kb on - strand, within EX31_RS09640 at 131.291 kb on - strand, within EX31_RS09640 at 131.291 kb on - strand, within EX31_RS09640 at 131.291 kb on - strand, within EX31_RS09640 at 131.346 kb on + strand at 131.347 kb on - strand at 131.347 kb on - strand at 131.432 kb on + strand at 131.443 kb on + strand at 131.444 kb on - strand at 131.444 kb on - strand at 131.464 kb on + strand at 131.477 kb on - strand, within EX31_RS09645 at 131.527 kb on - strand, within EX31_RS09645 at 131.527 kb on - strand, within EX31_RS09645 at 131.529 kb on + strand, within EX31_RS09645 at 131.529 kb on + strand, within EX31_RS09645 at 131.530 kb on - strand, within EX31_RS09645 at 131.550 kb on + strand, within EX31_RS09645 at 131.570 kb on - strand, within EX31_RS09645 at 131.570 kb on - strand, within EX31_RS09645 at 131.570 kb on - strand, within EX31_RS09645 at 131.573 kb on + strand, within EX31_RS09645 at 131.574 kb on - strand, within EX31_RS09645 at 131.583 kb on + strand, within EX31_RS09645 at 131.584 kb on - strand, within EX31_RS09645 at 131.617 kb on + strand, within EX31_RS09645 at 131.657 kb on - strand, within EX31_RS09645 at 131.657 kb on - strand, within EX31_RS09645 at 131.660 kb on + strand, within EX31_RS09645 at 131.661 kb on - strand, within EX31_RS09645 at 131.661 kb on - strand, within EX31_RS09645 at 131.661 kb on - strand, within EX31_RS09645 at 131.661 kb on - strand, within EX31_RS09645 at 131.709 kb on - strand, within EX31_RS09645 at 131.865 kb on - strand, within EX31_RS09645 at 131.920 kb on - strand, within EX31_RS09645 at 131.920 kb on - strand, within EX31_RS09645 at 132.149 kb on + strand at 132.149 kb on + strand at 132.149 kb on + strand at 132.149 kb on + strand at 132.150 kb on - strand at 132.150 kb on - strand at 132.150 kb on - strand at 132.153 kb on + strand at 132.213 kb on + strand at 132.213 kb on + strand at 132.213 kb on + strand at 132.213 kb on + strand at 132.214 kb on - strand at 132.288 kb on + strand at 132.288 kb on + strand at 132.323 kb on + strand at 132.323 kb on + strand at 132.324 kb on - strand at 132.324 kb on - strand at 132.326 kb on + strand at 132.380 kb on + strand at 132.446 kb on + strand, within EX31_RS09650 at 132.446 kb on + strand, within EX31_RS09650 at 132.454 kb on - strand, within EX31_RS09650 at 132.695 kb on + strand at 132.695 kb on + strand at 132.695 kb on + strand at 132.696 kb on - strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.742 kb on - strand at 132.742 kb on - strand at 132.742 kb on - strand at 132.827 kb on + strand, within EX31_RS09655 at 133.040 kb on - strand, within EX31_RS09655 at 133.060 kb on + strand, within EX31_RS09655
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 130,406 + +0.2 130,406 + -0.4 130,406 + -0.2 130,406 + +0.9 130,406 + -0.6 130,407 - -0.6 130,407 - +0.8 130,407 - +1.3 130,419 - +0.6 130,435 - +0.3 130,462 + +0.6 130,462 + -0.4 130,529 - +0.6 130,529 - -2.0 130,530 + +0.7 130,531 - +1.0 130,601 - EX31_RS09640 0.13 -0.2 130,634 + EX31_RS09640 0.17 -1.0 130,848 + EX31_RS09640 0.41 -0.2 130,848 + EX31_RS09640 0.41 -1.0 130,849 - EX31_RS09640 0.41 -0.7 130,849 - EX31_RS09640 0.41 +0.6 130,849 - EX31_RS09640 0.41 +0.6 130,849 - EX31_RS09640 0.41 -0.1 130,849 - EX31_RS09640 0.41 -1.0 130,849 - EX31_RS09640 0.41 -1.2 131,024 - EX31_RS09640 0.60 +0.2 131,170 - EX31_RS09640 0.76 -0.6 131,211 + EX31_RS09640 0.81 -0.2 131,212 - EX31_RS09640 0.81 +0.6 131,212 - EX31_RS09640 0.81 +1.6 131,212 - EX31_RS09640 0.81 +2.6 131,212 - EX31_RS09640 0.81 +1.2 131,212 - EX31_RS09640 0.81 +0.3 131,212 - EX31_RS09640 0.81 -1.4 131,235 + EX31_RS09640 0.83 -0.2 131,263 + EX31_RS09640 0.87 -0.0 131,272 - EX31_RS09640 0.88 +1.6 131,272 - EX31_RS09640 0.88 -1.6 131,291 - EX31_RS09640 0.90 -2.4 131,291 - EX31_RS09640 0.90 -0.4 131,291 - EX31_RS09640 0.90 +0.2 131,346 + +1.0 131,347 - -0.7 131,347 - +1.6 131,432 + -2.4 131,443 + -0.0 131,444 - +0.6 131,444 - -0.0 131,464 + +1.3 131,477 - EX31_RS09645 0.10 +0.6 131,527 - EX31_RS09645 0.17 +1.0 131,527 - EX31_RS09645 0.17 +1.4 131,529 + EX31_RS09645 0.18 +1.6 131,529 + EX31_RS09645 0.18 +0.6 131,530 - EX31_RS09645 0.18 -0.4 131,550 + EX31_RS09645 0.20 +2.4 131,570 - EX31_RS09645 0.23 +1.2 131,570 - EX31_RS09645 0.23 +1.9 131,570 - EX31_RS09645 0.23 +0.9 131,573 + EX31_RS09645 0.24 +0.6 131,574 - EX31_RS09645 0.24 -1.0 131,583 + EX31_RS09645 0.25 +1.9 131,584 - EX31_RS09645 0.25 +1.6 131,617 + EX31_RS09645 0.30 +0.2 131,657 - EX31_RS09645 0.35 -1.7 131,657 - EX31_RS09645 0.35 +0.6 131,660 + EX31_RS09645 0.36 -1.7 131,661 - EX31_RS09645 0.36 +0.1 131,661 - EX31_RS09645 0.36 -0.0 131,661 - EX31_RS09645 0.36 +2.2 131,661 - EX31_RS09645 0.36 +0.6 131,709 - EX31_RS09645 0.42 +1.5 131,865 - EX31_RS09645 0.64 -1.0 131,920 - EX31_RS09645 0.72 +0.4 131,920 - EX31_RS09645 0.72 +1.6 132,149 + -0.1 132,149 + -0.4 132,149 + +0.6 132,149 + +0.3 132,150 - +2.0 132,150 - -0.0 132,150 - +0.6 132,153 + +0.6 132,213 + -0.2 132,213 + +1.2 132,213 + -0.4 132,213 + +0.1 132,214 - +2.0 132,288 + -0.4 132,288 + +0.1 132,323 + -0.2 132,323 + +0.9 132,324 - +1.9 132,324 - +1.4 132,326 + +0.1 132,380 + -0.2 132,446 + EX31_RS09650 0.13 +1.6 132,446 + EX31_RS09650 0.13 -1.2 132,454 - EX31_RS09650 0.16 +1.7 132,695 + -0.4 132,695 + -0.1 132,695 + +0.8 132,696 - +2.1 132,697 + -0.0 132,697 + +0.6 132,697 + -1.9 132,697 + -2.0 132,697 + -0.6 132,697 + +1.4 132,697 + -0.7 132,697 + -1.0 132,697 + +0.7 132,697 + -1.2 132,742 - -1.7 132,742 - -0.8 132,742 - +2.9 132,827 + EX31_RS09655 0.19 -1.4 133,040 - EX31_RS09655 0.77 -2.6 133,060 + EX31_RS09655 0.82 +1.3
Or see this region's nucleotide sequence