Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09330 and EX31_RS09335 are separated by 413 nucleotides EX31_RS09335 and EX31_RS09340 are separated by 53 nucleotides EX31_RS09340 and EX31_RS09345 are separated by 114 nucleotides
EX31_RS09330: EX31_RS09330 - chloride channel protein, at 69,225 to 70,928
_RS09330
EX31_RS09335: EX31_RS09335 - hypothetical protein, at 71,342 to 71,656
_RS09335
EX31_RS09340: EX31_RS09340 - HigA family addiction module antidote protein, at 71,710 to 72,027
_RS09340
EX31_RS09345: EX31_RS09345 - ABC transporter substrate-binding protein, at 72,142 to 73,719
_RS09345
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 70.409 kb on - strand, within EX31_RS09330 at 70.409 kb on - strand, within EX31_RS09330 at 70.409 kb on - strand, within EX31_RS09330 at 70.448 kb on + strand, within EX31_RS09330 at 70.448 kb on + strand, within EX31_RS09330 at 70.448 kb on + strand, within EX31_RS09330 at 70.449 kb on - strand, within EX31_RS09330 at 70.449 kb on - strand, within EX31_RS09330 at 70.462 kb on - strand, within EX31_RS09330 at 70.929 kb on - strand at 71.124 kb on + strand at 71.124 kb on + strand at 71.124 kb on + strand at 71.125 kb on - strand at 71.125 kb on - strand at 71.250 kb on - strand at 71.250 kb on - strand at 71.318 kb on + strand at 71.424 kb on + strand, within EX31_RS09335 at 71.496 kb on + strand, within EX31_RS09335 at 71.496 kb on + strand, within EX31_RS09335 at 71.519 kb on + strand, within EX31_RS09335 at 71.621 kb on + strand, within EX31_RS09335 at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.654 kb on + strand at 71.659 kb on - strand at 71.666 kb on + strand at 71.692 kb on + strand at 71.692 kb on + strand at 71.692 kb on + strand at 71.709 kb on + strand at 71.709 kb on + strand at 71.727 kb on + strand at 71.727 kb on + strand at 71.753 kb on + strand, within EX31_RS09340 at 71.753 kb on + strand, within EX31_RS09340 at 71.826 kb on + strand, within EX31_RS09340 at 71.826 kb on + strand, within EX31_RS09340 at 71.847 kb on + strand, within EX31_RS09340 at 71.943 kb on + strand, within EX31_RS09340 at 71.985 kb on + strand, within EX31_RS09340 at 72.013 kb on - strand at 72.143 kb on + strand at 72.144 kb on - strand at 72.293 kb on + strand at 72.413 kb on + strand, within EX31_RS09345 at 72.413 kb on + strand, within EX31_RS09345 at 72.414 kb on - strand, within EX31_RS09345 at 72.414 kb on - strand, within EX31_RS09345 at 72.423 kb on + strand, within EX31_RS09345 at 72.424 kb on - strand, within EX31_RS09345 at 72.617 kb on - strand, within EX31_RS09345 at 72.627 kb on + strand, within EX31_RS09345 at 72.627 kb on + strand, within EX31_RS09345
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 70,409 - EX31_RS09330 0.69 -2.0 70,409 - EX31_RS09330 0.69 +0.9 70,409 - EX31_RS09330 0.69 -1.0 70,448 + EX31_RS09330 0.72 +1.1 70,448 + EX31_RS09330 0.72 +2.6 70,448 + EX31_RS09330 0.72 +1.0 70,449 - EX31_RS09330 0.72 -0.4 70,449 - EX31_RS09330 0.72 -0.4 70,462 - EX31_RS09330 0.73 -2.6 70,929 - +0.2 71,124 + +1.6 71,124 + -0.4 71,124 + +1.6 71,125 - +0.9 71,125 - +0.4 71,250 - +0.4 71,250 - -0.2 71,318 + -0.4 71,424 + EX31_RS09335 0.26 +1.6 71,496 + EX31_RS09335 0.49 -1.6 71,496 + EX31_RS09335 0.49 -1.4 71,519 + EX31_RS09335 0.56 -0.4 71,621 + EX31_RS09335 0.89 +1.2 71,625 + -1.0 71,625 + -1.2 71,625 + -0.4 71,625 + +0.6 71,625 + -0.6 71,654 + +2.2 71,659 - +1.6 71,666 + -0.9 71,692 + -0.4 71,692 + +0.4 71,692 + +1.8 71,709 + -2.1 71,709 + -0.6 71,727 + -2.2 71,727 + -2.7 71,753 + EX31_RS09340 0.14 -0.1 71,753 + EX31_RS09340 0.14 -0.6 71,826 + EX31_RS09340 0.36 -2.0 71,826 + EX31_RS09340 0.36 -2.4 71,847 + EX31_RS09340 0.43 +3.8 71,943 + EX31_RS09340 0.73 +0.4 71,985 + EX31_RS09340 0.86 -0.7 72,013 - +0.2 72,143 + -0.4 72,144 - +0.8 72,293 + +0.6 72,413 + EX31_RS09345 0.17 -0.7 72,413 + EX31_RS09345 0.17 +0.6 72,414 - EX31_RS09345 0.17 -0.4 72,414 - EX31_RS09345 0.17 -0.1 72,423 + EX31_RS09345 0.18 -0.2 72,424 - EX31_RS09345 0.18 -1.2 72,617 - EX31_RS09345 0.30 +1.4 72,627 + EX31_RS09345 0.31 +1.6 72,627 + EX31_RS09345 0.31 -0.4
Or see this region's nucleotide sequence