Strain Fitness in Rahnella sp. WP5 around EX31_RS09210

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09205 and EX31_RS09210 are separated by 105 nucleotidesEX31_RS09210 and EX31_RS09215 are separated by 192 nucleotides EX31_RS09205: EX31_RS09205 - siderophore-iron reductase FhuF, at 38,999 to 39,763 _RS09205 EX31_RS09210: EX31_RS09210 - hypothetical protein, at 39,869 to 40,207 _RS09210 EX31_RS09215: EX31_RS09215 - MFS transporter, at 40,400 to 41,719 _RS09215 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.958 kb on + strandat 38.959 kb on - strandat 38.997 kb on + strandat 38.997 kb on + strandat 38.998 kb on - strandat 38.998 kb on - strandat 38.998 kb on - strandat 38.998 kb on - strandat 39.055 kb on + strandat 39.221 kb on + strand, within EX31_RS09205at 39.221 kb on + strand, within EX31_RS09205at 39.222 kb on - strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.470 kb on + strand, within EX31_RS09205at 39.727 kb on + strandat 39.727 kb on + strandat 39.774 kb on + strandat 39.793 kb on + strandat 39.794 kb on - strandat 39.794 kb on - strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.831 kb on - strandat 39.832 kb on + strandat 39.833 kb on - strandat 39.844 kb on + strandat 39.844 kb on + strandat 39.844 kb on + strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.847 kb on - strandat 39.847 kb on - strandat 39.847 kb on - strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.849 kb on - strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.862 kb on - strandat 39.865 kb on + strandat 39.907 kb on + strand, within EX31_RS09210at 39.960 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.968 kb on - strand, within EX31_RS09210at 39.968 kb on - strand, within EX31_RS09210at 40.140 kb on + strand, within EX31_RS09210at 40.140 kb on + strand, within EX31_RS09210at 40.141 kb on - strand, within EX31_RS09210at 40.157 kb on + strand, within EX31_RS09210at 40.205 kb on + strandat 40.205 kb on + strandat 40.205 kb on + strandat 40.362 kb on - strandat 40.370 kb on - strandat 40.586 kb on + strand, within EX31_RS09215at 40.587 kb on - strand, within EX31_RS09215at 40.737 kb on - strand, within EX31_RS09215at 40.767 kb on + strand, within EX31_RS09215at 40.867 kb on + strand, within EX31_RS09215at 40.871 kb on + strand, within EX31_RS09215at 40.891 kb on + strand, within EX31_RS09215at 40.985 kb on - strand, within EX31_RS09215at 41.027 kb on + strand, within EX31_RS09215at 41.027 kb on + strand, within EX31_RS09215at 41.140 kb on + strand, within EX31_RS09215at 41.141 kb on - strand, within EX31_RS09215at 41.186 kb on + strand, within EX31_RS09215at 41.188 kb on + strand, within EX31_RS09215at 41.188 kb on + strand, within EX31_RS09215

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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38,958 + +3.2
38,959 - +2.9
38,997 + -0.2
38,997 + -0.4
38,998 - +2.6
38,998 - -0.4
38,998 - -0.0
38,998 - +1.6
39,055 + +0.2
39,221 + EX31_RS09205 0.29 -0.2
39,221 + EX31_RS09205 0.29 -1.0
39,222 - EX31_RS09205 0.29 -0.7
39,327 + EX31_RS09205 0.43 +1.6
39,327 + EX31_RS09205 0.43 -0.0
39,327 + EX31_RS09205 0.43 -0.2
39,470 + EX31_RS09205 0.62 -0.0
39,727 + +0.9
39,727 + -0.8
39,774 + +1.2
39,793 + +0.4
39,794 - -0.4
39,794 - -0.2
39,830 + +3.2
39,830 + -0.3
39,830 + +0.7
39,830 + -1.0
39,830 + -0.4
39,831 - +1.6
39,832 + -1.4
39,833 - -1.4
39,844 + +1.6
39,844 + +2.3
39,844 + -0.3
39,845 - -0.0
39,845 - +2.3
39,845 - +0.6
39,845 - -0.6
39,846 + -1.4
39,846 + +1.2
39,846 + -0.2
39,846 + -0.4
39,846 + -0.0
39,846 + +1.5
39,846 + -0.0
39,846 + -1.0
39,846 + +1.0
39,846 + +0.6
39,847 - +2.2
39,847 - +0.3
39,847 - +0.8
39,848 + -0.4
39,848 + +0.6
39,848 + +0.6
39,848 + +1.4
39,849 - +0.2
39,861 + +0.6
39,861 + +0.9
39,862 - -1.7
39,865 + +0.2
39,907 + EX31_RS09210 0.11 -1.9
39,960 + EX31_RS09210 0.27 -0.2
39,967 + EX31_RS09210 0.29 +1.0
39,967 + EX31_RS09210 0.29 +1.2
39,967 + EX31_RS09210 0.29 -0.0
39,967 + EX31_RS09210 0.29 +1.4
39,968 - EX31_RS09210 0.29 +0.8
39,968 - EX31_RS09210 0.29 -1.4
40,140 + EX31_RS09210 0.80 +1.6
40,140 + EX31_RS09210 0.80 +1.0
40,141 - EX31_RS09210 0.80 +1.6
40,157 + EX31_RS09210 0.85 +1.3
40,205 + -1.6
40,205 + +1.2
40,205 + +0.6
40,362 - -0.4
40,370 - -1.3
40,586 + EX31_RS09215 0.14 +0.8
40,587 - EX31_RS09215 0.14 +1.2
40,737 - EX31_RS09215 0.26 -0.3
40,767 + EX31_RS09215 0.28 +0.8
40,867 + EX31_RS09215 0.35 +0.1
40,871 + EX31_RS09215 0.36 -1.0
40,891 + EX31_RS09215 0.37 +1.6
40,985 - EX31_RS09215 0.44 -0.4
41,027 + EX31_RS09215 0.47 +0.6
41,027 + EX31_RS09215 0.47 -0.2
41,140 + EX31_RS09215 0.56 +1.0
41,141 - EX31_RS09215 0.56 -1.0
41,186 + EX31_RS09215 0.60 -0.4
41,188 + EX31_RS09215 0.60 +0.9
41,188 + EX31_RS09215 0.60 +0.6

Or see this region's nucleotide sequence