Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09085 and EX31_RS09095 are separated by 175 nucleotides EX31_RS09095 and EX31_RS09100 are separated by 285 nucleotides EX31_RS09100 and EX31_RS09105 overlap by 4 nucleotides
EX31_RS09085: EX31_RS09085 - hypothetical protein, at 6,887 to 7,208
_RS09085
EX31_RS09095: EX31_RS09095 - GNAT family N-acetyltransferase, at 7,384 to 7,917
_RS09095
EX31_RS09100: EX31_RS09100 - uroporphyrinogen-III C-methyltransferase, at 8,203 to 9,090
_RS09100
EX31_RS09105: EX31_RS09105 - nitrate reductase, at 9,087 to 11,759
_RS09105
Position (kb) 8
9
10 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7.295 kb on + strand at 7.295 kb on + strand at 7.295 kb on + strand at 7.295 kb on + strand at 7.384 kb on - strand at 7.429 kb on + strand at 7.619 kb on + strand, within EX31_RS09095 at 7.661 kb on - strand, within EX31_RS09095 at 7.786 kb on + strand, within EX31_RS09095 at 7.786 kb on + strand, within EX31_RS09095 at 7.786 kb on + strand, within EX31_RS09095 at 7.849 kb on + strand, within EX31_RS09095 at 7.850 kb on - strand, within EX31_RS09095 at 7.850 kb on - strand, within EX31_RS09095 at 7.850 kb on - strand, within EX31_RS09095 at 8.002 kb on + strand at 8.180 kb on - strand at 8.180 kb on - strand at 8.504 kb on + strand, within EX31_RS09100 at 8.504 kb on + strand, within EX31_RS09100 at 8.505 kb on - strand, within EX31_RS09100 at 8.505 kb on - strand, within EX31_RS09100 at 8.505 kb on - strand, within EX31_RS09100 at 8.626 kb on - strand, within EX31_RS09100 at 8.683 kb on + strand, within EX31_RS09100 at 9.065 kb on - strand at 9.263 kb on + strand at 9.264 kb on - strand at 9.406 kb on + strand, within EX31_RS09105 at 9.406 kb on + strand, within EX31_RS09105 at 9.407 kb on - strand, within EX31_RS09105 at 9.407 kb on - strand, within EX31_RS09105 at 9.502 kb on + strand, within EX31_RS09105 at 9.683 kb on + strand, within EX31_RS09105 at 9.684 kb on - strand, within EX31_RS09105 at 9.684 kb on - strand, within EX31_RS09105 at 9.684 kb on - strand, within EX31_RS09105 at 9.684 kb on - strand, within EX31_RS09105 at 9.684 kb on - strand, within EX31_RS09105
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 7,295 + +0.6 7,295 + +1.9 7,295 + +1.0 7,295 + +1.3 7,384 - +0.5 7,429 + +2.2 7,619 + EX31_RS09095 0.44 -0.4 7,661 - EX31_RS09095 0.52 +2.4 7,786 + EX31_RS09095 0.75 +0.9 7,786 + EX31_RS09095 0.75 -0.4 7,786 + EX31_RS09095 0.75 +0.2 7,849 + EX31_RS09095 0.87 +0.6 7,850 - EX31_RS09095 0.87 +1.6 7,850 - EX31_RS09095 0.87 -0.4 7,850 - EX31_RS09095 0.87 +0.2 8,002 + -0.4 8,180 - -0.1 8,180 - +1.8 8,504 + EX31_RS09100 0.34 +1.1 8,504 + EX31_RS09100 0.34 -1.4 8,505 - EX31_RS09100 0.34 -0.4 8,505 - EX31_RS09100 0.34 +2.2 8,505 - EX31_RS09100 0.34 -0.4 8,626 - EX31_RS09100 0.48 -2.2 8,683 + EX31_RS09100 0.54 -0.2 9,065 - +1.0 9,263 + -0.0 9,264 - +1.7 9,406 + EX31_RS09105 0.12 +1.6 9,406 + EX31_RS09105 0.12 +1.4 9,407 - EX31_RS09105 0.12 +2.2 9,407 - EX31_RS09105 0.12 -0.0 9,502 + EX31_RS09105 0.16 +0.3 9,683 + EX31_RS09105 0.22 +0.3 9,684 - EX31_RS09105 0.22 -0.4 9,684 - EX31_RS09105 0.22 -0.2 9,684 - EX31_RS09105 0.22 -0.4 9,684 - EX31_RS09105 0.22 +0.6 9,684 - EX31_RS09105 0.22 -0.0
Or see this region's nucleotide sequence