Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07935 and EX31_RS07940 are separated by 86 nucleotides EX31_RS07940 and EX31_RS07945 are separated by 75 nucleotides
EX31_RS07935: EX31_RS07935 - MurR/RpiR family transcriptional regulator, at 70,784 to 71,623
_RS07935
EX31_RS07940: EX31_RS07940 - phosphopyruvate hydratase, at 71,710 to 73,014
_RS07940
EX31_RS07945: EX31_RS07945 - CTP synthase (glutamine hydrolyzing), at 73,090 to 74,727
_RS07945
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 70.753 kb on + strand at 70.753 kb on + strand at 70.754 kb on - strand at 70.766 kb on + strand at 70.766 kb on + strand at 70.766 kb on + strand at 70.766 kb on + strand at 70.844 kb on + strand at 70.845 kb on - strand at 70.845 kb on - strand at 70.904 kb on + strand, within EX31_RS07935 at 70.904 kb on + strand, within EX31_RS07935 at 70.939 kb on + strand, within EX31_RS07935 at 71.003 kb on - strand, within EX31_RS07935 at 71.165 kb on - strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.186 kb on + strand, within EX31_RS07935 at 71.187 kb on - strand, within EX31_RS07935 at 71.187 kb on - strand, within EX31_RS07935 at 71.187 kb on - strand, within EX31_RS07935 at 71.187 kb on - strand, within EX31_RS07935 at 71.187 kb on - strand, within EX31_RS07935 at 71.220 kb on - strand, within EX31_RS07935 at 71.228 kb on + strand, within EX31_RS07935 at 71.229 kb on - strand, within EX31_RS07935 at 71.272 kb on + strand, within EX31_RS07935 at 71.272 kb on + strand, within EX31_RS07935 at 71.317 kb on + strand, within EX31_RS07935 at 71.407 kb on + strand, within EX31_RS07935 at 71.416 kb on + strand, within EX31_RS07935 at 71.416 kb on + strand, within EX31_RS07935 at 71.416 kb on + strand, within EX31_RS07935 at 71.416 kb on + strand, within EX31_RS07935 at 71.416 kb on + strand, within EX31_RS07935 at 71.416 kb on + strand, within EX31_RS07935 at 71.417 kb on - strand, within EX31_RS07935 at 71.417 kb on - strand, within EX31_RS07935 at 71.417 kb on - strand, within EX31_RS07935 at 71.450 kb on - strand, within EX31_RS07935 at 71.535 kb on + strand, within EX31_RS07935 at 71.535 kb on + strand, within EX31_RS07935 at 71.535 kb on + strand, within EX31_RS07935 at 71.535 kb on + strand, within EX31_RS07935 at 71.614 kb on - strand at 71.621 kb on + strand at 71.622 kb on - strand at 71.622 kb on - strand at 71.687 kb on - strand at 71.687 kb on - strand at 71.687 kb on - strand at 71.707 kb on + strand at 71.707 kb on + strand at 71.708 kb on - strand at 71.711 kb on + strand at 71.712 kb on - strand at 71.712 kb on - strand at 71.712 kb on - strand at 71.722 kb on - strand at 73.030 kb on - strand at 73.030 kb on - strand at 73.037 kb on - strand at 73.037 kb on - strand at 73.041 kb on - strand at 73.041 kb on - strand at 73.041 kb on - strand at 73.097 kb on - strand at 73.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 70,753 + -0.4 70,753 + -1.2 70,754 - -0.1 70,766 + +1.4 70,766 + -0.4 70,766 + +1.0 70,766 + -0.7 70,844 + -0.1 70,845 - -0.6 70,845 - +1.2 70,904 + EX31_RS07935 0.14 +0.4 70,904 + EX31_RS07935 0.14 +0.6 70,939 + EX31_RS07935 0.18 -0.9 71,003 - EX31_RS07935 0.26 -1.2 71,165 - EX31_RS07935 0.45 -0.3 71,186 + EX31_RS07935 0.48 +0.1 71,186 + EX31_RS07935 0.48 +0.3 71,186 + EX31_RS07935 0.48 +1.2 71,186 + EX31_RS07935 0.48 +0.5 71,186 + EX31_RS07935 0.48 +0.5 71,186 + EX31_RS07935 0.48 -1.8 71,186 + EX31_RS07935 0.48 +0.4 71,187 - EX31_RS07935 0.48 +0.8 71,187 - EX31_RS07935 0.48 -0.1 71,187 - EX31_RS07935 0.48 +1.4 71,187 - EX31_RS07935 0.48 +0.2 71,187 - EX31_RS07935 0.48 -0.8 71,220 - EX31_RS07935 0.52 +0.4 71,228 + EX31_RS07935 0.53 +0.5 71,229 - EX31_RS07935 0.53 -0.2 71,272 + EX31_RS07935 0.58 -2.2 71,272 + EX31_RS07935 0.58 +0.7 71,317 + EX31_RS07935 0.63 +0.6 71,407 + EX31_RS07935 0.74 +0.6 71,416 + EX31_RS07935 0.75 +0.5 71,416 + EX31_RS07935 0.75 +0.1 71,416 + EX31_RS07935 0.75 +0.6 71,416 + EX31_RS07935 0.75 +0.1 71,416 + EX31_RS07935 0.75 +1.0 71,416 + EX31_RS07935 0.75 +0.1 71,417 - EX31_RS07935 0.75 +0.1 71,417 - EX31_RS07935 0.75 +1.1 71,417 - EX31_RS07935 0.75 +0.4 71,450 - EX31_RS07935 0.79 -1.6 71,535 + EX31_RS07935 0.89 -1.2 71,535 + EX31_RS07935 0.89 -0.0 71,535 + EX31_RS07935 0.89 +0.1 71,535 + EX31_RS07935 0.89 -2.3 71,614 - +0.7 71,621 + -0.5 71,622 - -0.2 71,622 - +2.1 71,687 - +0.2 71,687 - -0.1 71,687 - +0.1 71,707 + +1.9 71,707 + -0.4 71,708 - +0.3 71,711 + -0.3 71,712 - -0.1 71,712 - -0.0 71,712 - +0.1 71,722 - -0.2 73,030 - +0.6 73,030 - +0.7 73,037 - -0.0 73,037 - +0.5 73,041 - +0.1 73,041 - +0.2 73,041 - -0.0 73,097 - -0.7 73,112 + +3.0
Or see this region's nucleotide sequence