Strain Fitness in Rahnella sp. WP5 around EX31_RS07745

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07740 and EX31_RS07745 are separated by 69 nucleotidesEX31_RS07745 and EX31_RS07750 are separated by 157 nucleotides EX31_RS07740: EX31_RS07740 - HlyC/CorC family transporter, at 29,858 to 31,147 _RS07740 EX31_RS07745: EX31_RS07745 - S-ribosylhomocysteine lyase, at 31,217 to 31,732 _RS07745 EX31_RS07750: EX31_RS07750 - glutamate--cysteine ligase, at 31,890 to 33,461 _RS07750 Position (kb) 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 30.271 kb on + strand, within EX31_RS07740at 30.271 kb on + strand, within EX31_RS07740at 30.271 kb on + strand, within EX31_RS07740at 30.271 kb on + strand, within EX31_RS07740at 30.272 kb on - strand, within EX31_RS07740at 30.272 kb on - strand, within EX31_RS07740at 30.368 kb on - strand, within EX31_RS07740at 30.511 kb on + strand, within EX31_RS07740at 30.547 kb on + strand, within EX31_RS07740at 30.547 kb on + strand, within EX31_RS07740at 30.568 kb on + strand, within EX31_RS07740at 30.568 kb on + strand, within EX31_RS07740at 30.569 kb on - strand, within EX31_RS07740at 30.602 kb on - strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.612 kb on + strand, within EX31_RS07740at 30.613 kb on - strand, within EX31_RS07740at 30.613 kb on - strand, within EX31_RS07740at 30.629 kb on + strand, within EX31_RS07740at 30.695 kb on + strand, within EX31_RS07740at 30.695 kb on + strand, within EX31_RS07740at 30.695 kb on + strand, within EX31_RS07740at 30.695 kb on + strand, within EX31_RS07740at 30.696 kb on - strand, within EX31_RS07740at 30.696 kb on - strand, within EX31_RS07740at 30.698 kb on + strand, within EX31_RS07740at 30.699 kb on - strand, within EX31_RS07740at 30.700 kb on + strand, within EX31_RS07740at 30.700 kb on + strand, within EX31_RS07740at 30.701 kb on - strand, within EX31_RS07740at 30.735 kb on + strand, within EX31_RS07740at 30.782 kb on + strand, within EX31_RS07740at 30.790 kb on + strand, within EX31_RS07740at 30.903 kb on + strand, within EX31_RS07740at 30.941 kb on - strand, within EX31_RS07740at 30.949 kb on + strand, within EX31_RS07740at 30.949 kb on + strand, within EX31_RS07740at 30.949 kb on + strand, within EX31_RS07740at 30.949 kb on + strand, within EX31_RS07740at 30.982 kb on + strand, within EX31_RS07740at 31.033 kb on + strandat 31.033 kb on + strandat 31.033 kb on + strandat 31.033 kb on + strandat 31.034 kb on - strandat 31.034 kb on - strandat 31.052 kb on + strandat 31.052 kb on + strandat 31.052 kb on + strandat 31.113 kb on + strandat 31.211 kb on + strandat 31.211 kb on + strandat 31.212 kb on - strandat 31.212 kb on - strandat 31.212 kb on - strandat 31.218 kb on + strandat 31.219 kb on - strandat 31.341 kb on + strand, within EX31_RS07745at 31.341 kb on + strand, within EX31_RS07745at 31.341 kb on + strand, within EX31_RS07745at 31.342 kb on - strand, within EX31_RS07745at 31.342 kb on - strand, within EX31_RS07745at 31.356 kb on + strand, within EX31_RS07745at 31.699 kb on + strandat 31.706 kb on + strandat 31.711 kb on + strandat 31.712 kb on - strandat 31.732 kb on + strandat 31.733 kb on - strandat 31.751 kb on + strandat 31.803 kb on + strandat 31.803 kb on + strandat 31.803 kb on + strandat 31.803 kb on + strandat 31.804 kb on - strandat 31.804 kb on - strandat 31.804 kb on - strandat 31.804 kb on - strandat 31.807 kb on + strandat 31.808 kb on - strandat 31.829 kb on - strandat 31.856 kb on + strandat 31.857 kb on - strandat 31.857 kb on - strandat 31.857 kb on - strandat 31.869 kb on + strandat 31.869 kb on + strandat 31.869 kb on + strandat 31.869 kb on + strandat 31.870 kb on - strandat 31.870 kb on - strandat 31.870 kb on - strandat 31.891 kb on + strandat 31.892 kb on - strandat 31.892 kb on - strandat 31.925 kb on - strandat 31.925 kb on - strandat 31.925 kb on - strandat 31.925 kb on - strandat 31.938 kb on + strandat 31.939 kb on - strandat 31.943 kb on + strandat 31.943 kb on + strandat 31.943 kb on + strandat 31.943 kb on + strandat 31.943 kb on + strandat 31.944 kb on - strandat 31.944 kb on - strandat 31.944 kb on - strandat 31.944 kb on - strandat 32.051 kb on - strand, within EX31_RS07750at 32.122 kb on + strand, within EX31_RS07750at 32.123 kb on - strand, within EX31_RS07750at 32.123 kb on - strand, within EX31_RS07750at 32.163 kb on - strand, within EX31_RS07750at 32.177 kb on - strand, within EX31_RS07750at 32.177 kb on - strand, within EX31_RS07750at 32.177 kb on - strand, within EX31_RS07750at 32.277 kb on - strand, within EX31_RS07750at 32.306 kb on + strand, within EX31_RS07750at 32.307 kb on - strand, within EX31_RS07750at 32.345 kb on + strand, within EX31_RS07750at 32.346 kb on - strand, within EX31_RS07750at 32.397 kb on + strand, within EX31_RS07750at 32.398 kb on - strand, within EX31_RS07750at 32.398 kb on - strand, within EX31_RS07750at 32.483 kb on + strand, within EX31_RS07750at 32.483 kb on + strand, within EX31_RS07750at 32.483 kb on + strand, within EX31_RS07750at 32.484 kb on - strand, within EX31_RS07750at 32.484 kb on - strand, within EX31_RS07750at 32.484 kb on - strand, within EX31_RS07750at 32.484 kb on - strand, within EX31_RS07750at 32.584 kb on - strand, within EX31_RS07750at 32.608 kb on + strand, within EX31_RS07750at 32.609 kb on - strand, within EX31_RS07750at 32.609 kb on - strand, within EX31_RS07750at 32.609 kb on - strand, within EX31_RS07750at 32.642 kb on - strand, within EX31_RS07750at 32.642 kb on - strand, within EX31_RS07750at 32.686 kb on + strand, within EX31_RS07750at 32.686 kb on + strand, within EX31_RS07750at 32.686 kb on + strand, within EX31_RS07750at 32.686 kb on + strand, within EX31_RS07750at 32.686 kb on + strand, within EX31_RS07750at 32.687 kb on - strand, within EX31_RS07750at 32.687 kb on - strand, within EX31_RS07750at 32.687 kb on - strand, within EX31_RS07750at 32.687 kb on - strand, within EX31_RS07750at 32.687 kb on - strand, within EX31_RS07750at 32.703 kb on - strand, within EX31_RS07750at 32.703 kb on - strand, within EX31_RS07750at 32.732 kb on + strand, within EX31_RS07750

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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30,271 + EX31_RS07740 0.32 -0.3
30,271 + EX31_RS07740 0.32 +0.6
30,271 + EX31_RS07740 0.32 +0.6
30,271 + EX31_RS07740 0.32 -0.0
30,272 - EX31_RS07740 0.32 -0.4
30,272 - EX31_RS07740 0.32 -0.2
30,368 - EX31_RS07740 0.40 +1.4
30,511 + EX31_RS07740 0.51 -0.2
30,547 + EX31_RS07740 0.53 +0.0
30,547 + EX31_RS07740 0.53 +0.4
30,568 + EX31_RS07740 0.55 +0.3
30,568 + EX31_RS07740 0.55 +1.0
30,569 - EX31_RS07740 0.55 +0.2
30,602 - EX31_RS07740 0.58 +1.8
30,612 + EX31_RS07740 0.58 -3.0
30,612 + EX31_RS07740 0.58 -0.1
30,612 + EX31_RS07740 0.58 +0.9
30,612 + EX31_RS07740 0.58 +0.5
30,612 + EX31_RS07740 0.58 -0.2
30,612 + EX31_RS07740 0.58 +0.5
30,612 + EX31_RS07740 0.58 -0.3
30,613 - EX31_RS07740 0.59 +0.9
30,613 - EX31_RS07740 0.59 -0.8
30,629 + EX31_RS07740 0.60 +0.3
30,695 + EX31_RS07740 0.65 -1.6
30,695 + EX31_RS07740 0.65 +0.8
30,695 + EX31_RS07740 0.65 +0.5
30,695 + EX31_RS07740 0.65 +0.5
30,696 - EX31_RS07740 0.65 +1.4
30,696 - EX31_RS07740 0.65 +0.2
30,698 + EX31_RS07740 0.65 +2.4
30,699 - EX31_RS07740 0.65 +1.5
30,700 + EX31_RS07740 0.65 +0.9
30,700 + EX31_RS07740 0.65 +0.1
30,701 - EX31_RS07740 0.65 +0.7
30,735 + EX31_RS07740 0.68 -0.8
30,782 + EX31_RS07740 0.72 -0.8
30,790 + EX31_RS07740 0.72 -0.0
30,903 + EX31_RS07740 0.81 -0.6
30,941 - EX31_RS07740 0.84 +0.5
30,949 + EX31_RS07740 0.85 -0.1
30,949 + EX31_RS07740 0.85 +1.4
30,949 + EX31_RS07740 0.85 +0.8
30,949 + EX31_RS07740 0.85 +0.6
30,982 + EX31_RS07740 0.87 +0.3
31,033 + +1.0
31,033 + -0.1
31,033 + +0.3
31,033 + -0.2
31,034 - -0.8
31,034 - +0.6
31,052 + +1.5
31,052 + -0.9
31,052 + +0.2
31,113 + +1.1
31,211 + +0.3
31,211 + -0.9
31,212 - -0.2
31,212 - -0.2
31,212 - -1.5
31,218 + +1.4
31,219 - +0.1
31,341 + EX31_RS07745 0.24 +0.1
31,341 + EX31_RS07745 0.24 +0.4
31,341 + EX31_RS07745 0.24 -0.1
31,342 - EX31_RS07745 0.24 +0.4
31,342 - EX31_RS07745 0.24 +1.4
31,356 + EX31_RS07745 0.27 +0.4
31,699 + +1.7
31,706 + +0.1
31,711 + -0.3
31,712 - +0.5
31,732 + +0.1
31,733 - +0.3
31,751 + -1.6
31,803 + -0.8
31,803 + +1.4
31,803 + -0.1
31,803 + +1.4
31,804 - +0.4
31,804 - +0.9
31,804 - +1.0
31,804 - -0.1
31,807 + -0.6
31,808 - +0.1
31,829 - +1.1
31,856 + +1.1
31,857 - +0.4
31,857 - -0.6
31,857 - -1.2
31,869 + +0.4
31,869 + +0.8
31,869 + +0.2
31,869 + +0.3
31,870 - -0.7
31,870 - +1.0
31,870 - +0.6
31,891 + +0.8
31,892 - -0.2
31,892 - +1.1
31,925 - -0.5
31,925 - -0.3
31,925 - -0.1
31,925 - -0.3
31,938 + -0.6
31,939 - +0.2
31,943 + +4.0
31,943 + +0.4
31,943 + -0.6
31,943 + +1.2
31,943 + +0.5
31,944 - +0.3
31,944 - +0.7
31,944 - +0.5
31,944 - +0.7
32,051 - EX31_RS07750 0.10 +3.0
32,122 + EX31_RS07750 0.15 -0.8
32,123 - EX31_RS07750 0.15 +0.8
32,123 - EX31_RS07750 0.15 -0.4
32,163 - EX31_RS07750 0.17 +0.2
32,177 - EX31_RS07750 0.18 -0.2
32,177 - EX31_RS07750 0.18 -0.2
32,177 - EX31_RS07750 0.18 -0.1
32,277 - EX31_RS07750 0.25 -0.5
32,306 + EX31_RS07750 0.26 +2.0
32,307 - EX31_RS07750 0.27 +0.2
32,345 + EX31_RS07750 0.29 +0.1
32,346 - EX31_RS07750 0.29 -0.4
32,397 + EX31_RS07750 0.32 +0.1
32,398 - EX31_RS07750 0.32 -0.4
32,398 - EX31_RS07750 0.32 +0.4
32,483 + EX31_RS07750 0.38 -1.2
32,483 + EX31_RS07750 0.38 -1.5
32,483 + EX31_RS07750 0.38 +0.2
32,484 - EX31_RS07750 0.38 -1.9
32,484 - EX31_RS07750 0.38 +3.2
32,484 - EX31_RS07750 0.38 -0.1
32,484 - EX31_RS07750 0.38 +2.8
32,584 - EX31_RS07750 0.44 +1.3
32,608 + EX31_RS07750 0.46 +0.2
32,609 - EX31_RS07750 0.46 +0.2
32,609 - EX31_RS07750 0.46 +1.8
32,609 - EX31_RS07750 0.46 -0.5
32,642 - EX31_RS07750 0.48 +1.0
32,642 - EX31_RS07750 0.48 +2.1
32,686 + EX31_RS07750 0.51 +1.4
32,686 + EX31_RS07750 0.51 +3.0
32,686 + EX31_RS07750 0.51 -0.6
32,686 + EX31_RS07750 0.51 -0.0
32,686 + EX31_RS07750 0.51 -0.2
32,687 - EX31_RS07750 0.51 +0.2
32,687 - EX31_RS07750 0.51 +0.2
32,687 - EX31_RS07750 0.51 +0.7
32,687 - EX31_RS07750 0.51 +1.3
32,687 - EX31_RS07750 0.51 +0.8
32,703 - EX31_RS07750 0.52 +0.1
32,703 - EX31_RS07750 0.52 -0.6
32,732 + EX31_RS07750 0.54 +2.4

Or see this region's nucleotide sequence