Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07465 and EX31_RS07470 are separated by 25 nucleotides EX31_RS07470 and EX31_RS07475 are separated by 334 nucleotides
EX31_RS07465: EX31_RS07465 - LysR family transcriptional regulator, at 304,911 to 305,798
_RS07465
EX31_RS07470: EX31_RS07470 - hypothetical protein, at 305,824 to 306,240
_RS07470
EX31_RS07475: EX31_RS07475 - hypothetical protein, at 306,575 to 307,147
_RS07475
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1
2 at 304.885 kb on - strand at 305.103 kb on + strand, within EX31_RS07465 at 305.103 kb on + strand, within EX31_RS07465 at 305.103 kb on + strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.132 kb on - strand, within EX31_RS07465 at 305.132 kb on - strand, within EX31_RS07465 at 305.250 kb on + strand, within EX31_RS07465 at 305.251 kb on - strand, within EX31_RS07465 at 305.684 kb on - strand, within EX31_RS07465 at 305.686 kb on + strand, within EX31_RS07465 at 305.720 kb on + strand at 305.845 kb on - strand at 305.904 kb on + strand, within EX31_RS07470 at 306.042 kb on - strand, within EX31_RS07470 at 306.170 kb on - strand, within EX31_RS07470 at 306.242 kb on + strand at 306.655 kb on + strand, within EX31_RS07475 at 306.655 kb on + strand, within EX31_RS07475 at 306.821 kb on - strand, within EX31_RS07475 at 307.084 kb on - strand, within EX31_RS07475 at 307.126 kb on + strand at 307.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 304,885 - -1.0 305,103 + EX31_RS07465 0.22 -1.4 305,103 + EX31_RS07465 0.22 +0.6 305,103 + EX31_RS07465 0.22 -1.7 305,104 - EX31_RS07465 0.22 -0.7 305,104 - EX31_RS07465 0.22 -0.0 305,104 - EX31_RS07465 0.22 -1.0 305,132 - EX31_RS07465 0.25 +0.9 305,132 - EX31_RS07465 0.25 -1.0 305,250 + EX31_RS07465 0.38 -1.1 305,251 - EX31_RS07465 0.38 -0.4 305,684 - EX31_RS07465 0.87 +0.1 305,686 + EX31_RS07465 0.87 +0.6 305,720 + +0.4 305,845 - -0.4 305,904 + EX31_RS07470 0.19 -1.0 306,042 - EX31_RS07470 0.52 +0.4 306,170 - EX31_RS07470 0.83 -1.0 306,242 + +1.6 306,655 + EX31_RS07475 0.14 +0.9 306,655 + EX31_RS07475 0.14 +2.6 306,821 - EX31_RS07475 0.43 -0.4 307,084 - EX31_RS07475 0.89 +1.3 307,126 + +0.6 307,169 - -0.6
Or see this region's nucleotide sequence