Strain Fitness in Rahnella sp. WP5 around EX31_RS07090

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07085 and EX31_RS07090 are separated by 4 nucleotidesEX31_RS07090 and EX31_RS07095 are separated by 132 nucleotidesEX31_RS07095 and EX31_RS07100 are separated by 52 nucleotides EX31_RS07085: EX31_RS07085 - LysR family transcriptional regulator, at 210,898 to 211,803 _RS07085 EX31_RS07090: EX31_RS07090 - YnfA family protein, at 211,808 to 212,134 _RS07090 EX31_RS07095: EX31_RS07095 - DUF1283 family protein, at 212,267 to 212,635 _RS07095 EX31_RS07100: EX31_RS07100 - DUF1161 domain-containing protein, at 212,688 to 212,981 _RS07100 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 210.810 kb on - strandat 210.859 kb on + strandat 210.859 kb on + strandat 210.859 kb on + strandat 210.860 kb on - strandat 210.863 kb on + strandat 211.360 kb on - strand, within EX31_RS07085at 211.525 kb on + strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.566 kb on + strand, within EX31_RS07085at 211.566 kb on + strand, within EX31_RS07085at 211.567 kb on - strand, within EX31_RS07085at 211.637 kb on + strand, within EX31_RS07085at 211.637 kb on + strand, within EX31_RS07085at 211.638 kb on - strand, within EX31_RS07085at 211.649 kb on + strand, within EX31_RS07085at 211.935 kb on + strand, within EX31_RS07090at 211.936 kb on - strand, within EX31_RS07090at 211.936 kb on - strand, within EX31_RS07090at 211.936 kb on - strand, within EX31_RS07090at 211.956 kb on + strand, within EX31_RS07090at 211.956 kb on + strand, within EX31_RS07090at 212.068 kb on - strand, within EX31_RS07090at 212.068 kb on - strand, within EX31_RS07090at 212.073 kb on - strand, within EX31_RS07090at 212.135 kb on - strandat 212.135 kb on - strandat 212.135 kb on - strandat 212.166 kb on + strandat 212.171 kb on + strandat 212.171 kb on + strandat 212.172 kb on - strandat 212.217 kb on + strandat 212.217 kb on + strandat 212.217 kb on + strandat 212.217 kb on + strandat 212.218 kb on - strandat 212.218 kb on - strandat 212.219 kb on + strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.228 kb on + strandat 212.228 kb on + strandat 212.229 kb on - strandat 212.247 kb on + strandat 212.248 kb on - strandat 212.253 kb on - strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.273 kb on - strandat 212.326 kb on + strand, within EX31_RS07095at 212.326 kb on + strand, within EX31_RS07095at 212.326 kb on + strand, within EX31_RS07095at 212.513 kb on + strand, within EX31_RS07095at 212.513 kb on + strand, within EX31_RS07095at 212.570 kb on + strand, within EX31_RS07095at 212.633 kb on + strandat 212.647 kb on + strandat 212.647 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.656 kb on - strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.723 kb on + strand, within EX31_RS07100at 212.764 kb on + strand, within EX31_RS07100at 212.819 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.909 kb on + strand, within EX31_RS07100at 212.909 kb on + strand, within EX31_RS07100at 212.979 kb on + strandat 212.982 kb on + strandat 212.982 kb on + strandat 212.982 kb on + strandat 212.983 kb on - strandat 213.071 kb on + strandat 213.072 kb on - strandat 213.074 kb on + strandat 213.074 kb on + strandat 213.074 kb on + strandat 213.074 kb on + strandat 213.081 kb on + strandat 213.081 kb on + strandat 213.081 kb on + strandat 213.081 kb on + strandat 213.082 kb on - strandat 213.082 kb on - strandat 213.086 kb on + strandat 213.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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210,810 - -0.6
210,859 + +3.4
210,859 + +2.2
210,859 + +0.3
210,860 - -0.6
210,863 + -0.0
211,360 - EX31_RS07085 0.51 +0.4
211,525 + EX31_RS07085 0.69 -0.4
211,526 - EX31_RS07085 0.69 +0.9
211,526 - EX31_RS07085 0.69 -0.4
211,526 - EX31_RS07085 0.69 +0.6
211,526 - EX31_RS07085 0.69 -0.4
211,526 - EX31_RS07085 0.69 +0.6
211,566 + EX31_RS07085 0.74 -0.2
211,566 + EX31_RS07085 0.74 +0.6
211,567 - EX31_RS07085 0.74 +1.2
211,637 + EX31_RS07085 0.82 -0.5
211,637 + EX31_RS07085 0.82 -0.0
211,638 - EX31_RS07085 0.82 +0.9
211,649 + EX31_RS07085 0.83 +1.4
211,935 + EX31_RS07090 0.39 +1.3
211,936 - EX31_RS07090 0.39 +1.0
211,936 - EX31_RS07090 0.39 +0.3
211,936 - EX31_RS07090 0.39 +0.6
211,956 + EX31_RS07090 0.45 -1.0
211,956 + EX31_RS07090 0.45 +0.9
212,068 - EX31_RS07090 0.80 -2.2
212,068 - EX31_RS07090 0.80 +1.0
212,073 - EX31_RS07090 0.81 +0.8
212,135 - +1.6
212,135 - -1.0
212,135 - +1.0
212,166 + +2.2
212,171 + +0.6
212,171 + -0.5
212,172 - +0.6
212,217 + -0.2
212,217 + +0.6
212,217 + +1.2
212,217 + +1.0
212,218 - +0.2
212,218 - +1.9
212,219 + +2.7
212,220 - -2.2
212,220 - -0.0
212,228 + +0.1
212,228 + +0.6
212,229 - -0.7
212,247 + +0.2
212,248 - +1.0
212,253 - -1.4
212,272 + +1.6
212,272 + +1.6
212,272 + -0.4
212,272 + -0.6
212,272 + +0.2
212,272 + +0.6
212,272 + +3.2
212,273 - -0.4
212,326 + EX31_RS07095 0.16 -1.0
212,326 + EX31_RS07095 0.16 +0.6
212,326 + EX31_RS07095 0.16 +0.8
212,513 + EX31_RS07095 0.67 -1.2
212,513 + EX31_RS07095 0.67 +1.2
212,570 + EX31_RS07095 0.82 -0.6
212,633 + -0.0
212,647 + +1.7
212,647 + -0.8
212,655 + -0.4
212,655 + -1.0
212,655 + -0.2
212,655 + +1.6
212,655 + +2.7
212,656 - -0.0
212,659 + +2.0
212,659 + -1.0
212,659 + -3.2
212,659 + +0.6
212,659 + -1.6
212,659 + +2.6
212,723 + EX31_RS07100 0.12 +0.8
212,764 + EX31_RS07100 0.26 +0.6
212,819 + EX31_RS07100 0.45 -0.8
212,907 + EX31_RS07100 0.74 -0.0
212,907 + EX31_RS07100 0.74 +1.1
212,907 + EX31_RS07100 0.74 +0.1
212,907 + EX31_RS07100 0.74 +1.2
212,907 + EX31_RS07100 0.74 +1.0
212,907 + EX31_RS07100 0.74 +1.4
212,907 + EX31_RS07100 0.74 -1.7
212,909 + EX31_RS07100 0.75 +1.2
212,909 + EX31_RS07100 0.75 +0.8
212,979 + +0.6
212,982 + +0.8
212,982 + -0.0
212,982 + +0.4
212,983 - -1.4
213,071 + +0.5
213,072 - -0.4
213,074 + -0.2
213,074 + -0.3
213,074 + +1.9
213,074 + +1.6
213,081 + -0.1
213,081 + +3.2
213,081 + +1.2
213,081 + +0.7
213,082 - -1.7
213,082 - +1.6
213,086 + +0.6
213,087 - +0.2

Or see this region's nucleotide sequence