Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07010 and EX31_RS07015 are separated by 243 nucleotides EX31_RS07015 and EX31_RS07020 are separated by 11 nucleotides
EX31_RS07010: EX31_RS07010 - ABC transporter ATP-binding protein, at 191,604 to 192,671
_RS07010
EX31_RS07015: EX31_RS07015 - xanthine dehydrogenase accessory protein XdhC, at 192,915 to 193,685
_RS07015
EX31_RS07020: EX31_RS07020 - xanthine dehydrogenase molybdopterin binding subunit, at 193,697 to 196,096
_RS07020
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.095 kb on - strand, within EX31_RS07010 at 192.095 kb on - strand, within EX31_RS07010 at 192.157 kb on - strand, within EX31_RS07010 at 192.367 kb on + strand, within EX31_RS07010 at 192.368 kb on - strand, within EX31_RS07010 at 192.373 kb on - strand, within EX31_RS07010 at 192.393 kb on - strand, within EX31_RS07010 at 192.393 kb on - strand, within EX31_RS07010 at 192.393 kb on - strand, within EX31_RS07010 at 192.410 kb on - strand, within EX31_RS07010 at 192.642 kb on - strand at 192.746 kb on + strand at 192.809 kb on - strand at 192.845 kb on - strand at 192.855 kb on - strand at 192.900 kb on - strand at 193.180 kb on + strand, within EX31_RS07015 at 193.181 kb on - strand, within EX31_RS07015 at 193.181 kb on - strand, within EX31_RS07015 at 193.284 kb on + strand, within EX31_RS07015 at 193.306 kb on - strand, within EX31_RS07015 at 193.505 kb on + strand, within EX31_RS07015 at 193.538 kb on + strand, within EX31_RS07015 at 193.539 kb on - strand, within EX31_RS07015 at 193.540 kb on + strand, within EX31_RS07015 at 193.656 kb on + strand at 193.657 kb on - strand at 193.657 kb on - strand at 193.657 kb on - strand at 193.724 kb on - strand at 193.818 kb on - strand at 194.192 kb on + strand, within EX31_RS07020 at 194.224 kb on - strand, within EX31_RS07020 at 194.226 kb on + strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 192,095 - EX31_RS07010 0.46 +0.7 192,095 - EX31_RS07010 0.46 -0.7 192,157 - EX31_RS07010 0.52 -0.7 192,367 + EX31_RS07010 0.71 -0.7 192,368 - EX31_RS07010 0.72 -1.0 192,373 - EX31_RS07010 0.72 +1.4 192,393 - EX31_RS07010 0.74 +1.6 192,393 - EX31_RS07010 0.74 -0.4 192,393 - EX31_RS07010 0.74 +0.6 192,410 - EX31_RS07010 0.75 +3.2 192,642 - +1.4 192,746 + +1.6 192,809 - +0.4 192,845 - -0.0 192,855 - -1.7 192,900 - -0.4 193,180 + EX31_RS07015 0.34 -0.4 193,181 - EX31_RS07015 0.35 +1.0 193,181 - EX31_RS07015 0.35 -1.0 193,284 + EX31_RS07015 0.48 +0.6 193,306 - EX31_RS07015 0.51 +1.9 193,505 + EX31_RS07015 0.77 +3.6 193,538 + EX31_RS07015 0.81 +2.2 193,539 - EX31_RS07015 0.81 +1.6 193,540 + EX31_RS07015 0.81 +1.6 193,656 + +2.2 193,657 - -3.1 193,657 - +1.6 193,657 - -0.4 193,724 - -1.2 193,818 - +0.6 194,192 + EX31_RS07020 0.21 +1.6 194,224 - EX31_RS07020 0.22 +0.9 194,226 + EX31_RS07020 0.22 -0.4 194,665 - EX31_RS07020 0.40 +1.4 194,665 - EX31_RS07020 0.40 +0.8 194,665 - EX31_RS07020 0.40 +0.6 194,665 - EX31_RS07020 0.40 -1.6
Or see this region's nucleotide sequence