Strain Fitness in Rahnella sp. WP5 around EX31_RS06965

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS06960 and EX31_RS06965 are separated by 64 nucleotidesEX31_RS06965 and EX31_RS06970 are separated by 246 nucleotides EX31_RS06960: EX31_RS06960 - DNA replication terminus site-binding protein, at 180,077 to 181,012 _RS06960 EX31_RS06965: EX31_RS06965 - class II fumarate hydratase, at 181,077 to 182,474 _RS06965 EX31_RS06970: EX31_RS06970 - mannose-6-phosphate isomerase, at 182,721 to 183,902 _RS06970 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 180.086 kb on + strandat 180.086 kb on + strandat 180.086 kb on + strandat 180.093 kb on + strandat 180.189 kb on + strand, within EX31_RS06960at 180.193 kb on + strand, within EX31_RS06960at 180.193 kb on + strand, within EX31_RS06960at 180.194 kb on - strand, within EX31_RS06960at 180.207 kb on + strand, within EX31_RS06960at 180.207 kb on + strand, within EX31_RS06960at 180.227 kb on - strand, within EX31_RS06960at 180.288 kb on + strand, within EX31_RS06960at 180.319 kb on + strand, within EX31_RS06960at 180.320 kb on - strand, within EX31_RS06960at 180.320 kb on - strand, within EX31_RS06960at 180.323 kb on - strand, within EX31_RS06960at 180.504 kb on + strand, within EX31_RS06960at 180.504 kb on + strand, within EX31_RS06960at 180.504 kb on + strand, within EX31_RS06960at 180.508 kb on + strand, within EX31_RS06960at 180.508 kb on + strand, within EX31_RS06960at 180.508 kb on + strand, within EX31_RS06960at 180.508 kb on + strand, within EX31_RS06960at 180.558 kb on - strand, within EX31_RS06960at 180.558 kb on - strand, within EX31_RS06960at 180.604 kb on + strand, within EX31_RS06960at 180.604 kb on + strand, within EX31_RS06960at 180.604 kb on + strand, within EX31_RS06960at 180.605 kb on - strand, within EX31_RS06960at 180.607 kb on + strand, within EX31_RS06960at 180.610 kb on + strand, within EX31_RS06960at 180.683 kb on + strand, within EX31_RS06960at 180.684 kb on - strand, within EX31_RS06960at 180.709 kb on + strand, within EX31_RS06960at 180.710 kb on - strand, within EX31_RS06960at 180.861 kb on + strand, within EX31_RS06960at 180.892 kb on + strand, within EX31_RS06960at 180.892 kb on + strand, within EX31_RS06960at 180.893 kb on - strand, within EX31_RS06960at 180.893 kb on - strand, within EX31_RS06960at 180.914 kb on + strand, within EX31_RS06960at 180.914 kb on + strand, within EX31_RS06960at 180.914 kb on + strand, within EX31_RS06960at 180.938 kb on - strandat 180.938 kb on - strandat 180.938 kb on - strandat 180.941 kb on + strandat 180.941 kb on + strandat 180.942 kb on - strandat 180.942 kb on - strandat 181.010 kb on + strandat 181.062 kb on + strandat 181.063 kb on - strandat 181.063 kb on - strandat 181.063 kb on - strandat 181.066 kb on + strandat 181.067 kb on - strandat 181.284 kb on - strand, within EX31_RS06965at 181.284 kb on - strand, within EX31_RS06965at 181.295 kb on + strand, within EX31_RS06965at 181.296 kb on - strand, within EX31_RS06965at 181.296 kb on - strand, within EX31_RS06965at 181.336 kb on - strand, within EX31_RS06965at 181.336 kb on - strand, within EX31_RS06965at 181.337 kb on + strand, within EX31_RS06965at 181.337 kb on + strand, within EX31_RS06965at 181.337 kb on + strand, within EX31_RS06965at 181.338 kb on - strand, within EX31_RS06965at 181.373 kb on + strand, within EX31_RS06965at 181.374 kb on - strand, within EX31_RS06965at 181.472 kb on + strand, within EX31_RS06965at 181.472 kb on + strand, within EX31_RS06965at 181.472 kb on + strand, within EX31_RS06965at 181.473 kb on - strand, within EX31_RS06965at 181.473 kb on - strand, within EX31_RS06965at 181.473 kb on - strand, within EX31_RS06965at 181.473 kb on - strand, within EX31_RS06965at 181.473 kb on - strand, within EX31_RS06965at 181.582 kb on - strand, within EX31_RS06965at 181.764 kb on - strand, within EX31_RS06965at 181.812 kb on - strand, within EX31_RS06965at 182.096 kb on + strand, within EX31_RS06965at 182.159 kb on + strand, within EX31_RS06965at 182.159 kb on + strand, within EX31_RS06965at 182.160 kb on - strand, within EX31_RS06965at 182.160 kb on - strand, within EX31_RS06965at 182.298 kb on - strand, within EX31_RS06965at 182.486 kb on + strandat 182.495 kb on - strandat 182.498 kb on - strandat 182.498 kb on - strandat 182.498 kb on - strandat 182.506 kb on - strandat 182.526 kb on + strandat 182.526 kb on + strandat 182.574 kb on + strandat 182.574 kb on + strandat 182.574 kb on + strandat 182.575 kb on - strandat 182.575 kb on - strandat 182.577 kb on - strandat 182.577 kb on - strandat 182.584 kb on + strandat 182.584 kb on + strandat 182.584 kb on + strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.585 kb on - strandat 182.586 kb on + strandat 182.586 kb on + strandat 182.586 kb on + strandat 182.587 kb on - strandat 182.587 kb on - strandat 182.587 kb on - strandat 182.597 kb on + strandat 182.599 kb on + strandat 182.599 kb on + strandat 182.600 kb on - strandat 182.600 kb on - strandat 182.663 kb on + strandat 182.663 kb on + strandat 182.688 kb on + strandat 182.689 kb on - strandat 182.698 kb on + strandat 182.698 kb on + strandat 182.706 kb on - strandat 182.735 kb on + strandat 182.787 kb on + strandat 182.795 kb on + strandat 182.853 kb on - strand, within EX31_RS06970at 182.905 kb on + strand, within EX31_RS06970at 182.905 kb on + strand, within EX31_RS06970at 182.906 kb on - strand, within EX31_RS06970at 183.097 kb on - strand, within EX31_RS06970at 183.302 kb on + strand, within EX31_RS06970at 183.302 kb on + strand, within EX31_RS06970at 183.302 kb on + strand, within EX31_RS06970at 183.378 kb on - strand, within EX31_RS06970at 183.433 kb on + strand, within EX31_RS06970at 183.434 kb on - strand, within EX31_RS06970at 183.434 kb on - strand, within EX31_RS06970at 183.434 kb on - strand, within EX31_RS06970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
180,086 + +1.9
180,086 + -0.4
180,086 + +2.4
180,093 + -1.0
180,189 + EX31_RS06960 0.12 -0.0
180,193 + EX31_RS06960 0.12 -1.0
180,193 + EX31_RS06960 0.12 +0.2
180,194 - EX31_RS06960 0.12 +0.6
180,207 + EX31_RS06960 0.14 +0.6
180,207 + EX31_RS06960 0.14 -0.4
180,227 - EX31_RS06960 0.16 +0.9
180,288 + EX31_RS06960 0.23 +0.2
180,319 + EX31_RS06960 0.26 +0.9
180,320 - EX31_RS06960 0.26 +0.6
180,320 - EX31_RS06960 0.26 +0.9
180,323 - EX31_RS06960 0.26 +1.0
180,504 + EX31_RS06960 0.46 -0.4
180,504 + EX31_RS06960 0.46 +0.7
180,504 + EX31_RS06960 0.46 -1.0
180,508 + EX31_RS06960 0.46 +0.6
180,508 + EX31_RS06960 0.46 +1.9
180,508 + EX31_RS06960 0.46 +2.0
180,508 + EX31_RS06960 0.46 +0.4
180,558 - EX31_RS06960 0.51 +1.1
180,558 - EX31_RS06960 0.51 -2.0
180,604 + EX31_RS06960 0.56 -2.4
180,604 + EX31_RS06960 0.56 +1.9
180,604 + EX31_RS06960 0.56 -1.0
180,605 - EX31_RS06960 0.56 +2.2
180,607 + EX31_RS06960 0.57 +1.2
180,610 + EX31_RS06960 0.57 -1.0
180,683 + EX31_RS06960 0.65 +0.8
180,684 - EX31_RS06960 0.65 -1.0
180,709 + EX31_RS06960 0.68 +0.4
180,710 - EX31_RS06960 0.68 +0.6
180,861 + EX31_RS06960 0.84 +0.6
180,892 + EX31_RS06960 0.87 +1.2
180,892 + EX31_RS06960 0.87 +1.9
180,893 - EX31_RS06960 0.87 -0.6
180,893 - EX31_RS06960 0.87 +2.0
180,914 + EX31_RS06960 0.89 +1.6
180,914 + EX31_RS06960 0.89 +0.3
180,914 + EX31_RS06960 0.89 +1.6
180,938 - -0.2
180,938 - -1.0
180,938 - +1.1
180,941 + -0.0
180,941 + -1.7
180,942 - +1.2
180,942 - +0.9
181,010 + +0.6
181,062 + -1.0
181,063 - +2.9
181,063 - +0.2
181,063 - -1.0
181,066 + +1.9
181,067 - +0.6
181,284 - EX31_RS06965 0.15 -1.7
181,284 - EX31_RS06965 0.15 -0.1
181,295 + EX31_RS06965 0.16 +1.6
181,296 - EX31_RS06965 0.16 +0.6
181,296 - EX31_RS06965 0.16 -0.4
181,336 - EX31_RS06965 0.19 -1.3
181,336 - EX31_RS06965 0.19 +1.4
181,337 + EX31_RS06965 0.19 +3.2
181,337 + EX31_RS06965 0.19 -1.0
181,337 + EX31_RS06965 0.19 -0.4
181,338 - EX31_RS06965 0.19 +0.4
181,373 + EX31_RS06965 0.21 +0.3
181,374 - EX31_RS06965 0.21 -0.4
181,472 + EX31_RS06965 0.28 -0.4
181,472 + EX31_RS06965 0.28 -1.7
181,472 + EX31_RS06965 0.28 -0.6
181,473 - EX31_RS06965 0.28 -0.4
181,473 - EX31_RS06965 0.28 -1.4
181,473 - EX31_RS06965 0.28 +0.6
181,473 - EX31_RS06965 0.28 -1.7
181,473 - EX31_RS06965 0.28 -0.4
181,582 - EX31_RS06965 0.36 -2.0
181,764 - EX31_RS06965 0.49 +0.6
181,812 - EX31_RS06965 0.53 -0.4
182,096 + EX31_RS06965 0.73 -0.6
182,159 + EX31_RS06965 0.77 -0.2
182,159 + EX31_RS06965 0.77 +0.6
182,160 - EX31_RS06965 0.77 -0.5
182,160 - EX31_RS06965 0.77 -0.7
182,298 - EX31_RS06965 0.87 -0.4
182,486 + +1.2
182,495 - -0.4
182,498 - +1.2
182,498 - +0.6
182,498 - +0.6
182,506 - +0.6
182,526 + +0.9
182,526 + +2.2
182,574 + -1.7
182,574 + -0.6
182,574 + -0.7
182,575 - +1.6
182,575 - +2.4
182,577 - -0.2
182,577 - -1.0
182,584 + -0.4
182,584 + +0.6
182,584 + +0.6
182,585 - -3.3
182,585 - -0.4
182,585 - +2.9
182,585 - -0.4
182,585 - -1.0
182,585 - +1.8
182,585 - +0.9
182,585 - +2.2
182,586 + +1.6
182,586 + -2.4
182,586 + +2.0
182,587 - +0.6
182,587 - +1.7
182,587 - +1.2
182,597 + -0.0
182,599 + -0.7
182,599 + -1.0
182,600 - -0.2
182,600 - +0.9
182,663 + +3.3
182,663 + +0.6
182,688 + +0.8
182,689 - +2.9
182,698 + +1.6
182,698 + -0.7
182,706 - +1.9
182,735 + +3.2
182,787 + +2.4
182,795 + +0.6
182,853 - EX31_RS06970 0.11 +1.6
182,905 + EX31_RS06970 0.16 +2.3
182,905 + EX31_RS06970 0.16 -0.1
182,906 - EX31_RS06970 0.16 +2.6
183,097 - EX31_RS06970 0.32 -0.0
183,302 + EX31_RS06970 0.49 +0.2
183,302 + EX31_RS06970 0.49 +1.0
183,302 + EX31_RS06970 0.49 +1.9
183,378 - EX31_RS06970 0.56 +0.6
183,433 + EX31_RS06970 0.60 -0.6
183,434 - EX31_RS06970 0.60 -0.3
183,434 - EX31_RS06970 0.60 -0.7
183,434 - EX31_RS06970 0.60 -0.4

Or see this region's nucleotide sequence