Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06905 and EX31_RS06910 are separated by 201 nucleotides EX31_RS06910 and EX31_RS06915 are separated by 138 nucleotides EX31_RS06915 and EX31_RS06920 are separated by 78 nucleotides
EX31_RS06905: EX31_RS06905 - MarR family transcriptional regulator, at 171,259 to 171,717
_RS06905
EX31_RS06910: EX31_RS06910 - VOC family protein, at 171,919 to 172,332
_RS06910
EX31_RS06915: EX31_RS06915 - type I glyceraldehyde-3-phosphate dehydrogenase, at 172,471 to 173,481
_RS06915
EX31_RS06920: EX31_RS06920 - GlxA family transcriptional regulator, at 173,560 to 174,549
_RS06920
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.568 kb on + strand, within EX31_RS06905 at 171.569 kb on - strand, within EX31_RS06905 at 171.571 kb on + strand, within EX31_RS06905 at 171.571 kb on + strand, within EX31_RS06905 at 171.571 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.626 kb on + strand, within EX31_RS06905 at 171.627 kb on - strand, within EX31_RS06905 at 171.706 kb on + strand at 171.709 kb on + strand at 171.709 kb on + strand at 171.710 kb on - strand at 171.765 kb on - strand at 171.783 kb on + strand at 171.783 kb on + strand at 171.832 kb on + strand at 171.836 kb on + strand at 171.836 kb on + strand at 171.837 kb on - strand at 171.837 kb on - strand at 171.857 kb on - strand at 171.860 kb on + strand at 171.860 kb on + strand at 171.860 kb on + strand at 171.915 kb on + strand at 172.246 kb on + strand, within EX31_RS06910 at 172.305 kb on + strand at 172.395 kb on + strand at 172.413 kb on + strand at 172.415 kb on + strand at 172.416 kb on - strand at 172.416 kb on - strand at 172.542 kb on - strand at 172.542 kb on - strand at 172.671 kb on + strand, within EX31_RS06915 at 173.026 kb on - strand, within EX31_RS06915 at 173.026 kb on - strand, within EX31_RS06915 at 173.290 kb on + strand, within EX31_RS06915 at 173.324 kb on - strand, within EX31_RS06915 at 173.388 kb on + strand at 173.389 kb on - strand at 173.470 kb on + strand at 173.470 kb on + strand at 173.471 kb on - strand at 173.494 kb on - strand at 173.512 kb on + strand at 173.684 kb on - strand, within EX31_RS06920 at 173.836 kb on + strand, within EX31_RS06920 at 173.861 kb on - strand, within EX31_RS06920 at 173.960 kb on - strand, within EX31_RS06920 at 174.077 kb on + strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.253 kb on + strand, within EX31_RS06920 at 174.254 kb on - strand, within EX31_RS06920 at 174.254 kb on - strand, within EX31_RS06920 at 174.303 kb on + strand, within EX31_RS06920 at 174.304 kb on - strand, within EX31_RS06920 at 174.304 kb on - strand, within EX31_RS06920 at 174.360 kb on + strand, within EX31_RS06920
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 171,568 + EX31_RS06905 0.67 -0.2 171,568 + EX31_RS06905 0.67 -0.2 171,568 + EX31_RS06905 0.67 +0.6 171,568 + EX31_RS06905 0.67 +0.8 171,568 + EX31_RS06905 0.67 +1.9 171,568 + EX31_RS06905 0.67 +2.6 171,569 - EX31_RS06905 0.68 -0.4 171,571 + EX31_RS06905 0.68 +1.2 171,571 + EX31_RS06905 0.68 +1.3 171,571 + EX31_RS06905 0.68 +2.3 171,626 + EX31_RS06905 0.80 -0.6 171,626 + EX31_RS06905 0.80 +0.1 171,626 + EX31_RS06905 0.80 -0.4 171,626 + EX31_RS06905 0.80 -1.4 171,627 - EX31_RS06905 0.80 +3.2 171,706 + +0.8 171,709 + +2.6 171,709 + +1.2 171,710 - +0.7 171,765 - +0.6 171,783 + -0.4 171,783 + +0.6 171,832 + +1.2 171,836 + -0.4 171,836 + +0.1 171,837 - +0.3 171,837 - -1.7 171,857 - +2.6 171,860 + -0.4 171,860 + +0.2 171,860 + -0.0 171,915 + +1.6 172,246 + EX31_RS06910 0.79 -0.0 172,305 + +2.6 172,395 + +1.6 172,413 + -1.2 172,415 + +1.1 172,416 - -0.4 172,416 - +0.6 172,542 - +0.6 172,542 - +0.6 172,671 + EX31_RS06915 0.20 -2.0 173,026 - EX31_RS06915 0.55 -0.6 173,026 - EX31_RS06915 0.55 -1.2 173,290 + EX31_RS06915 0.81 +0.6 173,324 - EX31_RS06915 0.84 +0.6 173,388 + +1.3 173,389 - +1.2 173,470 + -1.6 173,470 + +0.6 173,471 - -1.4 173,494 - +0.2 173,512 + -2.9 173,684 - EX31_RS06920 0.13 -0.5 173,836 + EX31_RS06920 0.28 +0.2 173,861 - EX31_RS06920 0.30 +0.5 173,960 - EX31_RS06920 0.40 +2.2 174,077 + EX31_RS06920 0.52 +0.6 174,078 - EX31_RS06920 0.52 +2.9 174,078 - EX31_RS06920 0.52 +0.2 174,078 - EX31_RS06920 0.52 +0.6 174,253 + EX31_RS06920 0.70 -0.2 174,254 - EX31_RS06920 0.70 +0.6 174,254 - EX31_RS06920 0.70 +0.1 174,303 + EX31_RS06920 0.75 +0.6 174,304 - EX31_RS06920 0.75 -1.4 174,304 - EX31_RS06920 0.75 -0.6 174,360 + EX31_RS06920 0.81 -0.3
Or see this region's nucleotide sequence