Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06875 and EX31_RS06880 are separated by 197 nucleotides EX31_RS06880 and EX31_RS06885 are separated by 222 nucleotides EX31_RS06885 and EX31_RS06890 are separated by 177 nucleotides
EX31_RS06875: EX31_RS06875 - Mal regulon transcriptional regulator MalI, at 164,340 to 165,371
_RS06875
EX31_RS06880: EX31_RS06880 - colicin M resistance protein, at 165,569 to 165,940
_RS06880
EX31_RS06885: EX31_RS06885 - NAD(P)-dependent oxidoreductase, at 166,163 to 167,044
_RS06885
EX31_RS06890: EX31_RS06890 - isopenicillin N synthase family oxygenase, at 167,222 to 168,250
_RS06890
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.190 kb on + strand, within EX31_RS06875 at 165.190 kb on + strand, within EX31_RS06875 at 165.195 kb on - strand, within EX31_RS06875 at 165.370 kb on - strand at 165.404 kb on + strand at 165.571 kb on - strand at 165.668 kb on - strand, within EX31_RS06880 at 165.668 kb on - strand, within EX31_RS06880 at 165.668 kb on - strand, within EX31_RS06880 at 165.669 kb on + strand, within EX31_RS06880 at 165.669 kb on + strand, within EX31_RS06880 at 165.669 kb on + strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.670 kb on - strand, within EX31_RS06880 at 165.758 kb on - strand, within EX31_RS06880 at 165.777 kb on + strand, within EX31_RS06880 at 165.777 kb on + strand, within EX31_RS06880 at 165.778 kb on - strand, within EX31_RS06880 at 165.778 kb on - strand, within EX31_RS06880 at 165.778 kb on - strand, within EX31_RS06880 at 165.778 kb on - strand, within EX31_RS06880 at 165.861 kb on + strand, within EX31_RS06880 at 165.862 kb on - strand, within EX31_RS06880 at 165.862 kb on - strand, within EX31_RS06880 at 165.865 kb on + strand, within EX31_RS06880 at 165.865 kb on + strand, within EX31_RS06880 at 165.866 kb on - strand, within EX31_RS06880 at 165.866 kb on - strand, within EX31_RS06880 at 165.866 kb on - strand, within EX31_RS06880 at 165.867 kb on + strand, within EX31_RS06880 at 165.867 kb on + strand, within EX31_RS06880 at 165.867 kb on + strand, within EX31_RS06880 at 165.867 kb on + strand, within EX31_RS06880 at 165.867 kb on + strand, within EX31_RS06880 at 165.867 kb on + strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.868 kb on - strand, within EX31_RS06880 at 165.935 kb on - strand at 165.941 kb on - strand at 165.941 kb on - strand at 165.941 kb on - strand at 165.963 kb on + strand at 165.963 kb on + strand at 165.991 kb on - strand at 166.001 kb on + strand at 166.024 kb on + strand at 166.025 kb on - strand at 166.025 kb on - strand at 166.030 kb on - strand at 166.038 kb on + strand at 166.038 kb on + strand at 166.052 kb on + strand at 166.053 kb on - strand at 166.053 kb on - strand at 166.056 kb on + strand at 166.056 kb on + strand at 166.056 kb on + strand at 166.059 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.137 kb on + strand at 166.138 kb on - strand at 166.138 kb on - strand at 166.138 kb on - strand at 166.138 kb on - strand at 166.138 kb on - strand at 166.138 kb on - strand at 166.138 kb on - strand at 166.150 kb on + strand at 166.192 kb on - strand at 166.360 kb on + strand, within EX31_RS06885 at 166.360 kb on + strand, within EX31_RS06885 at 166.360 kb on + strand, within EX31_RS06885 at 166.471 kb on - strand, within EX31_RS06885 at 166.732 kb on + strand, within EX31_RS06885 at 166.826 kb on - strand, within EX31_RS06885 at 166.862 kb on + strand, within EX31_RS06885 at 166.900 kb on + strand, within EX31_RS06885 at 166.927 kb on + strand, within EX31_RS06885 at 166.954 kb on + strand, within EX31_RS06885 at 166.954 kb on + strand, within EX31_RS06885 at 167.018 kb on + strand at 167.018 kb on + strand at 167.019 kb on - strand at 167.049 kb on + strand at 167.134 kb on + strand at 167.197 kb on + strand at 167.200 kb on + strand at 167.373 kb on + strand, within EX31_RS06890 at 167.373 kb on + strand, within EX31_RS06890 at 167.569 kb on + strand, within EX31_RS06890 at 167.761 kb on + strand, within EX31_RS06890 at 167.761 kb on + strand, within EX31_RS06890 at 167.761 kb on + strand, within EX31_RS06890 at 167.762 kb on - strand, within EX31_RS06890 at 167.926 kb on + strand, within EX31_RS06890 at 167.937 kb on + strand, within EX31_RS06890 at 167.941 kb on + strand, within EX31_RS06890 at 167.992 kb on - strand, within EX31_RS06890 at 167.992 kb on - strand, within EX31_RS06890
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 165,190 + EX31_RS06875 0.82 +0.5 165,190 + EX31_RS06875 0.82 -0.4 165,195 - EX31_RS06875 0.83 +0.6 165,370 - +0.6 165,404 + -0.2 165,571 - +0.6 165,668 - EX31_RS06880 0.27 -0.0 165,668 - EX31_RS06880 0.27 +0.8 165,668 - EX31_RS06880 0.27 -1.0 165,669 + EX31_RS06880 0.27 -1.4 165,669 + EX31_RS06880 0.27 -1.2 165,669 + EX31_RS06880 0.27 -0.3 165,670 - EX31_RS06880 0.27 +0.3 165,670 - EX31_RS06880 0.27 +1.2 165,670 - EX31_RS06880 0.27 +0.3 165,670 - EX31_RS06880 0.27 -1.0 165,670 - EX31_RS06880 0.27 +0.6 165,670 - EX31_RS06880 0.27 -0.4 165,670 - EX31_RS06880 0.27 +0.6 165,670 - EX31_RS06880 0.27 -0.6 165,670 - EX31_RS06880 0.27 +0.8 165,758 - EX31_RS06880 0.51 +1.2 165,777 + EX31_RS06880 0.56 -1.7 165,777 + EX31_RS06880 0.56 -1.0 165,778 - EX31_RS06880 0.56 -2.2 165,778 - EX31_RS06880 0.56 +1.6 165,778 - EX31_RS06880 0.56 +3.4 165,778 - EX31_RS06880 0.56 -0.4 165,861 + EX31_RS06880 0.78 -0.4 165,862 - EX31_RS06880 0.79 +1.8 165,862 - EX31_RS06880 0.79 -0.3 165,865 + EX31_RS06880 0.80 +0.4 165,865 + EX31_RS06880 0.80 -1.6 165,866 - EX31_RS06880 0.80 +3.6 165,866 - EX31_RS06880 0.80 +2.9 165,866 - EX31_RS06880 0.80 +2.2 165,867 + EX31_RS06880 0.80 +1.3 165,867 + EX31_RS06880 0.80 +0.8 165,867 + EX31_RS06880 0.80 -0.4 165,867 + EX31_RS06880 0.80 +0.6 165,867 + EX31_RS06880 0.80 -0.7 165,867 + EX31_RS06880 0.80 -0.4 165,868 - EX31_RS06880 0.80 -0.4 165,868 - EX31_RS06880 0.80 -2.7 165,868 - EX31_RS06880 0.80 +0.8 165,868 - EX31_RS06880 0.80 -0.4 165,868 - EX31_RS06880 0.80 +2.2 165,868 - EX31_RS06880 0.80 -1.0 165,868 - EX31_RS06880 0.80 +1.4 165,868 - EX31_RS06880 0.80 +0.1 165,935 - -0.9 165,941 - -0.5 165,941 - +1.7 165,941 - +0.9 165,963 + +1.4 165,963 + +1.1 165,991 - +0.6 166,001 + +0.6 166,024 + -0.1 166,025 - +0.6 166,025 - +0.3 166,030 - +0.9 166,038 + +1.1 166,038 + -0.0 166,052 + +0.8 166,053 - -0.4 166,053 - -0.0 166,056 + -1.4 166,056 + +1.6 166,056 + -0.0 166,059 + +0.6 166,137 + +1.0 166,137 + +0.6 166,137 + -0.6 166,137 + -0.8 166,137 + +1.6 166,137 + -1.2 166,137 + +0.2 166,137 + +0.4 166,137 + +2.2 166,137 + +2.7 166,137 + +0.6 166,137 + -1.0 166,137 + +0.1 166,137 + +0.1 166,137 + -0.3 166,137 + -0.4 166,138 - +0.8 166,138 - +0.6 166,138 - +1.6 166,138 - +2.2 166,138 - +2.2 166,138 - +1.0 166,138 - -0.7 166,150 + -1.0 166,192 - +0.1 166,360 + EX31_RS06885 0.22 +2.9 166,360 + EX31_RS06885 0.22 -0.0 166,360 + EX31_RS06885 0.22 +2.2 166,471 - EX31_RS06885 0.35 +1.2 166,732 + EX31_RS06885 0.65 +0.6 166,826 - EX31_RS06885 0.75 -0.2 166,862 + EX31_RS06885 0.79 -0.4 166,900 + EX31_RS06885 0.84 +1.1 166,927 + EX31_RS06885 0.87 -0.6 166,954 + EX31_RS06885 0.90 +1.3 166,954 + EX31_RS06885 0.90 -1.1 167,018 + -0.2 167,018 + +0.4 167,019 - +1.0 167,049 + -0.4 167,134 + -0.1 167,197 + +1.8 167,200 + +0.4 167,373 + EX31_RS06890 0.15 -0.0 167,373 + EX31_RS06890 0.15 -1.6 167,569 + EX31_RS06890 0.34 -0.4 167,761 + EX31_RS06890 0.52 +1.2 167,761 + EX31_RS06890 0.52 -0.4 167,761 + EX31_RS06890 0.52 -0.0 167,762 - EX31_RS06890 0.52 +0.6 167,926 + EX31_RS06890 0.68 -0.4 167,937 + EX31_RS06890 0.69 -0.2 167,941 + EX31_RS06890 0.70 +0.6 167,992 - EX31_RS06890 0.75 -1.0 167,992 - EX31_RS06890 0.75 -0.7
Or see this region's nucleotide sequence