Strain Fitness in Rahnella sp. WP5 around EX31_RS06615

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06610 and EX31_RS06615 are separated by 1 nucleotidesEX31_RS06615 and EX31_RS06620 overlap by 1 nucleotidesEX31_RS06620 and EX31_RS06625 are separated by 40 nucleotides EX31_RS06610: EX31_RS06610 - electron transport complex subunit RsxC, at 97,001 to 99,106 _RS06610 EX31_RS06615: EX31_RS06615 - electron transport complex subunit RsxB, at 99,108 to 99,674 _RS06615 EX31_RS06620: EX31_RS06620 - electron transport complex subunit RsxA, at 99,674 to 100,255 _RS06620 EX31_RS06625: EX31_RS06625 - DUF2569 domain-containing protein, at 100,296 to 100,736 _RS06625 Position (kb) 99 100Strain fitness (log2 ratio) -2 -1 0 1 2 3at 98.115 kb on - strand, within EX31_RS06610at 98.249 kb on - strand, within EX31_RS06610at 98.367 kb on + strand, within EX31_RS06610at 98.435 kb on - strand, within EX31_RS06610at 98.574 kb on + strand, within EX31_RS06610at 98.574 kb on + strand, within EX31_RS06610at 98.574 kb on + strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.759 kb on - strand, within EX31_RS06610at 98.910 kb on - strandat 98.910 kb on - strandat 98.978 kb on - strandat 98.978 kb on - strandat 99.050 kb on - strandat 99.101 kb on - strandat 99.101 kb on - strandat 99.101 kb on - strandat 99.110 kb on - strandat 99.110 kb on - strandat 99.110 kb on - strandat 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.262 kb on - strand, within EX31_RS06615at 99.262 kb on - strand, within EX31_RS06615at 99.262 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.346 kb on + strand, within EX31_RS06615at 99.347 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.497 kb on - strand, within EX31_RS06615at 99.497 kb on - strand, within EX31_RS06615at 99.675 kb on + strandat 99.676 kb on - strandat 99.704 kb on - strandat 99.711 kb on - strandat 99.850 kb on - strand, within EX31_RS06620at 100.025 kb on - strand, within EX31_RS06620at 100.034 kb on - strand, within EX31_RS06620at 100.034 kb on - strand, within EX31_RS06620at 100.097 kb on - strand, within EX31_RS06620at 100.097 kb on - strand, within EX31_RS06620at 100.203 kb on - strandat 100.210 kb on + strandat 100.211 kb on - strandat 100.211 kb on - strandat 100.211 kb on - strandat 100.215 kb on - strandat 100.215 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.276 kb on - strandat 100.283 kb on - strandat 100.372 kb on - strand, within EX31_RS06625at 100.378 kb on - strand, within EX31_RS06625at 100.460 kb on + strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.464 kb on - strand, within EX31_RS06625at 100.465 kb on + strand, within EX31_RS06625at 100.466 kb on - strand, within EX31_RS06625at 100.494 kb on - strand, within EX31_RS06625at 100.525 kb on - strand, within EX31_RS06625at 100.525 kb on - strand, within EX31_RS06625at 100.559 kb on - strand, within EX31_RS06625at 100.572 kb on - strand, within EX31_RS06625at 100.617 kb on - strand, within EX31_RS06625at 100.621 kb on - strand, within EX31_RS06625at 100.648 kb on - strand, within EX31_RS06625at 100.651 kb on - strand, within EX31_RS06625at 100.651 kb on - strand, within EX31_RS06625

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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98,115 - EX31_RS06610 0.53 +1.0
98,249 - EX31_RS06610 0.59 -0.3
98,367 + EX31_RS06610 0.65 -1.4
98,435 - EX31_RS06610 0.68 +1.6
98,574 + EX31_RS06610 0.75 +1.2
98,574 + EX31_RS06610 0.75 +1.2
98,574 + EX31_RS06610 0.75 +1.6
98,575 - EX31_RS06610 0.75 -0.6
98,575 - EX31_RS06610 0.75 +3.7
98,575 - EX31_RS06610 0.75 +1.4
98,575 - EX31_RS06610 0.75 +0.2
98,575 - EX31_RS06610 0.75 +0.2
98,575 - EX31_RS06610 0.75 -0.6
98,575 - EX31_RS06610 0.75 -0.1
98,575 - EX31_RS06610 0.75 -1.0
98,575 - EX31_RS06610 0.75 +1.9
98,575 - EX31_RS06610 0.75 +1.1
98,575 - EX31_RS06610 0.75 +0.7
98,575 - EX31_RS06610 0.75 -0.7
98,575 - EX31_RS06610 0.75 -1.4
98,759 - EX31_RS06610 0.83 +1.3
98,910 - +0.6
98,910 - +1.2
98,978 - +2.2
98,978 - -1.7
99,050 - +0.4
99,101 - -1.0
99,101 - -0.4
99,101 - +1.1
99,110 - -1.0
99,110 - -0.8
99,110 - +0.6
99,241 - EX31_RS06615 0.23 -1.0
99,241 - EX31_RS06615 0.23 +1.6
99,241 - EX31_RS06615 0.23 +0.3
99,241 - EX31_RS06615 0.23 -0.7
99,241 - EX31_RS06615 0.23 -2.0
99,241 - EX31_RS06615 0.23 -0.2
99,241 - EX31_RS06615 0.23 +0.4
99,241 - EX31_RS06615 0.23 -1.3
99,241 - EX31_RS06615 0.23 +0.6
99,241 - EX31_RS06615 0.23 -0.2
99,241 - EX31_RS06615 0.23 +1.6
99,241 - EX31_RS06615 0.23 -0.9
99,241 - EX31_RS06615 0.23 -0.4
99,262 - EX31_RS06615 0.27 -1.7
99,262 - EX31_RS06615 0.27 -0.4
99,262 - EX31_RS06615 0.27 -1.0
99,309 - EX31_RS06615 0.35 -0.6
99,309 - EX31_RS06615 0.35 -0.7
99,309 - EX31_RS06615 0.35 -0.4
99,309 - EX31_RS06615 0.35 -0.4
99,309 - EX31_RS06615 0.35 +0.8
99,309 - EX31_RS06615 0.35 -0.0
99,346 + EX31_RS06615 0.42 -1.4
99,347 - EX31_RS06615 0.42 +1.6
99,462 - EX31_RS06615 0.62 +0.0
99,462 - EX31_RS06615 0.62 -1.0
99,462 - EX31_RS06615 0.62 -1.7
99,462 - EX31_RS06615 0.62 -2.3
99,497 - EX31_RS06615 0.69 +0.8
99,497 - EX31_RS06615 0.69 -0.2
99,675 + -1.7
99,676 - -1.0
99,704 - -0.0
99,711 - -0.0
99,850 - EX31_RS06620 0.30 +0.0
100,025 - EX31_RS06620 0.60 +0.4
100,034 - EX31_RS06620 0.62 -0.3
100,034 - EX31_RS06620 0.62 +0.6
100,097 - EX31_RS06620 0.73 -2.4
100,097 - EX31_RS06620 0.73 +0.9
100,203 - -0.7
100,210 + -0.7
100,211 - +0.8
100,211 - +0.2
100,211 - +0.3
100,215 - -1.6
100,215 - +0.6
100,246 - -0.3
100,246 - -0.5
100,246 - -0.0
100,246 - +0.2
100,246 - +1.6
100,276 - -0.4
100,283 - +1.4
100,372 - EX31_RS06625 0.17 -1.0
100,378 - EX31_RS06625 0.19 +1.2
100,460 + EX31_RS06625 0.37 -0.4
100,461 - EX31_RS06625 0.37 -1.2
100,461 - EX31_RS06625 0.37 +1.4
100,461 - EX31_RS06625 0.37 -0.6
100,461 - EX31_RS06625 0.37 -0.6
100,464 - EX31_RS06625 0.38 +1.0
100,465 + EX31_RS06625 0.38 +2.4
100,466 - EX31_RS06625 0.39 -2.2
100,494 - EX31_RS06625 0.45 -0.2
100,525 - EX31_RS06625 0.52 -0.0
100,525 - EX31_RS06625 0.52 -1.4
100,559 - EX31_RS06625 0.60 -0.4
100,572 - EX31_RS06625 0.63 +0.7
100,617 - EX31_RS06625 0.73 -0.7
100,621 - EX31_RS06625 0.74 -1.6
100,648 - EX31_RS06625 0.80 +2.2
100,651 - EX31_RS06625 0.80 +0.6
100,651 - EX31_RS06625 0.80 +0.9

Or see this region's nucleotide sequence