Strain Fitness in Rahnella sp. WP5 around EX31_RS05880

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05875 and EX31_RS05880 are separated by 190 nucleotidesEX31_RS05880 and EX31_RS05885 overlap by 4 nucleotidesEX31_RS05885 and EX31_RS05890 are separated by 221 nucleotides EX31_RS05875: EX31_RS05875 - autotransporter domain-containing esterase, at 329,417 to 331,423 _RS05875 EX31_RS05880: EX31_RS05880 - DNA-3-methyladenine glycosylase I, at 331,614 to 332,186 _RS05880 EX31_RS05885: EX31_RS05885 - N-acetyltransferase, at 332,183 to 332,626 _RS05885 EX31_RS05890: EX31_RS05890 - OmpA family lipoprotein, at 332,848 to 333,510 _RS05890 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 330.619 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.636 kb on + strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.637 kb on - strand, within EX31_RS05875at 330.678 kb on + strand, within EX31_RS05875at 330.679 kb on - strand, within EX31_RS05875at 330.679 kb on - strand, within EX31_RS05875at 330.679 kb on - strand, within EX31_RS05875at 330.796 kb on + strand, within EX31_RS05875at 330.797 kb on - strand, within EX31_RS05875at 330.797 kb on - strand, within EX31_RS05875at 330.797 kb on - strand, within EX31_RS05875at 330.813 kb on + strand, within EX31_RS05875at 330.814 kb on - strand, within EX31_RS05875at 330.819 kb on + strand, within EX31_RS05875at 330.820 kb on - strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.063 kb on + strand, within EX31_RS05875at 331.064 kb on - strand, within EX31_RS05875at 331.064 kb on - strand, within EX31_RS05875at 331.064 kb on - strand, within EX31_RS05875at 331.064 kb on - strand, within EX31_RS05875at 331.064 kb on - strand, within EX31_RS05875at 331.064 kb on - strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.065 kb on + strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.066 kb on - strand, within EX31_RS05875at 331.108 kb on - strand, within EX31_RS05875at 331.115 kb on - strand, within EX31_RS05875at 331.115 kb on - strand, within EX31_RS05875at 331.115 kb on - strand, within EX31_RS05875at 331.134 kb on + strand, within EX31_RS05875at 331.179 kb on + strand, within EX31_RS05875at 331.180 kb on - strand, within EX31_RS05875at 331.180 kb on - strand, within EX31_RS05875at 331.180 kb on - strand, within EX31_RS05875at 331.208 kb on + strand, within EX31_RS05875at 331.208 kb on + strand, within EX31_RS05875at 331.208 kb on + strand, within EX31_RS05875at 331.208 kb on + strand, within EX31_RS05875at 331.208 kb on + strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.209 kb on - strand, within EX31_RS05875at 331.246 kb on - strandat 331.246 kb on - strandat 331.246 kb on - strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.320 kb on + strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.321 kb on - strandat 331.353 kb on - strandat 331.353 kb on - strandat 331.397 kb on + strandat 331.398 kb on - strandat 331.442 kb on + strandat 331.442 kb on + strandat 331.443 kb on - strandat 331.464 kb on + strandat 331.464 kb on + strandat 331.465 kb on - strandat 331.471 kb on - strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.477 kb on + strandat 331.478 kb on - strandat 331.478 kb on - strandat 331.478 kb on - strandat 331.478 kb on - strandat 331.478 kb on - strandat 331.482 kb on - strandat 331.494 kb on + strandat 331.494 kb on + strandat 331.498 kb on + strandat 331.498 kb on + strandat 331.498 kb on + strandat 331.498 kb on + strandat 331.499 kb on - strandat 331.499 kb on - strandat 331.499 kb on - strandat 331.535 kb on - strandat 331.535 kb on - strandat 331.557 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.590 kb on + strandat 331.591 kb on - strandat 331.591 kb on - strandat 331.591 kb on - strandat 331.591 kb on - strandat 331.591 kb on - strandat 331.591 kb on - strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.599 kb on + strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.600 kb on - strandat 331.601 kb on + strandat 331.601 kb on + strandat 331.601 kb on + strandat 331.601 kb on + strandat 331.601 kb on + strandat 331.601 kb on + strandat 331.601 kb on + strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.602 kb on - strandat 331.622 kb on + strandat 331.622 kb on + strandat 331.623 kb on - strandat 331.657 kb on - strandat 331.657 kb on - strandat 331.657 kb on - strandat 331.665 kb on + strandat 331.666 kb on - strandat 331.785 kb on + strand, within EX31_RS05880at 331.785 kb on + strand, within EX31_RS05880at 331.786 kb on - strand, within EX31_RS05880at 331.923 kb on + strand, within EX31_RS05880at 331.924 kb on - strand, within EX31_RS05880at 331.924 kb on - strand, within EX31_RS05880at 332.151 kb on + strandat 332.151 kb on + strandat 332.151 kb on + strandat 332.152 kb on - strandat 332.276 kb on + strand, within EX31_RS05885at 332.277 kb on - strand, within EX31_RS05885at 332.372 kb on - strand, within EX31_RS05885at 332.412 kb on + strand, within EX31_RS05885at 332.474 kb on + strand, within EX31_RS05885at 332.499 kb on - strand, within EX31_RS05885at 332.528 kb on + strand, within EX31_RS05885at 332.528 kb on + strand, within EX31_RS05885at 332.529 kb on - strand, within EX31_RS05885at 332.591 kb on + strandat 332.591 kb on + strandat 332.591 kb on + strandat 332.591 kb on + strandat 332.592 kb on - strandat 332.592 kb on - strandat 332.624 kb on + strandat 332.624 kb on + strandat 332.624 kb on + strandat 332.624 kb on + strandat 332.625 kb on - strandat 332.682 kb on - strandat 332.702 kb on - strandat 332.800 kb on + strandat 332.801 kb on - strandat 332.844 kb on + strandat 332.844 kb on + strandat 332.844 kb on + strandat 332.844 kb on + strandat 332.844 kb on + strandat 332.845 kb on - strandat 332.861 kb on + strandat 332.862 kb on - strandat 332.862 kb on - strandat 332.879 kb on + strandat 332.879 kb on + strandat 332.879 kb on + strandat 332.923 kb on + strand, within EX31_RS05890at 332.997 kb on + strand, within EX31_RS05890at 333.012 kb on + strand, within EX31_RS05890at 333.082 kb on + strand, within EX31_RS05890at 333.082 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.085 kb on + strand, within EX31_RS05890at 333.086 kb on - strand, within EX31_RS05890at 333.086 kb on - strand, within EX31_RS05890at 333.086 kb on - strand, within EX31_RS05890at 333.183 kb on + strand, within EX31_RS05890at 333.183 kb on + strand, within EX31_RS05890at 333.184 kb on - strand, within EX31_RS05890at 333.184 kb on - strand, within EX31_RS05890

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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330,619 + EX31_RS05875 0.60 +0.4
330,636 + EX31_RS05875 0.61 -1.5
330,636 + EX31_RS05875 0.61 +0.2
330,636 + EX31_RS05875 0.61 +0.3
330,636 + EX31_RS05875 0.61 +0.6
330,636 + EX31_RS05875 0.61 +1.6
330,636 + EX31_RS05875 0.61 +0.1
330,636 + EX31_RS05875 0.61 +0.4
330,636 + EX31_RS05875 0.61 -0.3
330,637 - EX31_RS05875 0.61 -1.3
330,637 - EX31_RS05875 0.61 -0.3
330,637 - EX31_RS05875 0.61 +0.8
330,637 - EX31_RS05875 0.61 +0.2
330,637 - EX31_RS05875 0.61 -0.0
330,637 - EX31_RS05875 0.61 +1.0
330,637 - EX31_RS05875 0.61 +0.8
330,637 - EX31_RS05875 0.61 -1.1
330,637 - EX31_RS05875 0.61 +0.4
330,678 + EX31_RS05875 0.63 -1.8
330,679 - EX31_RS05875 0.63 +0.1
330,679 - EX31_RS05875 0.63 +1.1
330,679 - EX31_RS05875 0.63 -1.4
330,796 + EX31_RS05875 0.69 +0.8
330,797 - EX31_RS05875 0.69 +0.7
330,797 - EX31_RS05875 0.69 -0.9
330,797 - EX31_RS05875 0.69 +0.3
330,813 + EX31_RS05875 0.70 +0.9
330,814 - EX31_RS05875 0.70 -0.3
330,819 + EX31_RS05875 0.70 +0.7
330,820 - EX31_RS05875 0.70 +0.7
331,063 + EX31_RS05875 0.82 -0.4
331,063 + EX31_RS05875 0.82 +0.1
331,063 + EX31_RS05875 0.82 -0.2
331,063 + EX31_RS05875 0.82 +1.2
331,063 + EX31_RS05875 0.82 -0.2
331,063 + EX31_RS05875 0.82 -0.6
331,063 + EX31_RS05875 0.82 +1.4
331,064 - EX31_RS05875 0.82 -0.1
331,064 - EX31_RS05875 0.82 +1.9
331,064 - EX31_RS05875 0.82 -0.5
331,064 - EX31_RS05875 0.82 +0.5
331,064 - EX31_RS05875 0.82 +1.6
331,064 - EX31_RS05875 0.82 +0.8
331,065 + EX31_RS05875 0.82 +0.3
331,065 + EX31_RS05875 0.82 -0.4
331,065 + EX31_RS05875 0.82 +0.0
331,065 + EX31_RS05875 0.82 -1.3
331,065 + EX31_RS05875 0.82 +1.1
331,065 + EX31_RS05875 0.82 -0.2
331,065 + EX31_RS05875 0.82 +0.3
331,065 + EX31_RS05875 0.82 +0.5
331,065 + EX31_RS05875 0.82 -1.0
331,065 + EX31_RS05875 0.82 +0.0
331,065 + EX31_RS05875 0.82 +0.2
331,065 + EX31_RS05875 0.82 +0.3
331,065 + EX31_RS05875 0.82 +0.6
331,065 + EX31_RS05875 0.82 +0.8
331,066 - EX31_RS05875 0.82 -0.3
331,066 - EX31_RS05875 0.82 +0.5
331,066 - EX31_RS05875 0.82 -0.1
331,066 - EX31_RS05875 0.82 +1.0
331,066 - EX31_RS05875 0.82 +0.9
331,066 - EX31_RS05875 0.82 +0.2
331,066 - EX31_RS05875 0.82 +0.5
331,066 - EX31_RS05875 0.82 -0.0
331,066 - EX31_RS05875 0.82 +0.0
331,066 - EX31_RS05875 0.82 +1.0
331,066 - EX31_RS05875 0.82 -1.0
331,066 - EX31_RS05875 0.82 +1.6
331,066 - EX31_RS05875 0.82 +0.6
331,066 - EX31_RS05875 0.82 -0.1
331,108 - EX31_RS05875 0.84 +0.5
331,115 - EX31_RS05875 0.85 -0.6
331,115 - EX31_RS05875 0.85 -1.5
331,115 - EX31_RS05875 0.85 +0.0
331,134 + EX31_RS05875 0.86 +0.7
331,179 + EX31_RS05875 0.88 -1.1
331,180 - EX31_RS05875 0.88 -0.1
331,180 - EX31_RS05875 0.88 +0.0
331,180 - EX31_RS05875 0.88 +4.4
331,208 + EX31_RS05875 0.89 +0.1
331,208 + EX31_RS05875 0.89 +0.4
331,208 + EX31_RS05875 0.89 -0.1
331,208 + EX31_RS05875 0.89 +1.0
331,208 + EX31_RS05875 0.89 -0.1
331,209 - EX31_RS05875 0.89 -0.8
331,209 - EX31_RS05875 0.89 +1.8
331,209 - EX31_RS05875 0.89 +0.3
331,209 - EX31_RS05875 0.89 +0.6
331,209 - EX31_RS05875 0.89 +0.2
331,209 - EX31_RS05875 0.89 -0.8
331,209 - EX31_RS05875 0.89 -0.6
331,209 - EX31_RS05875 0.89 +1.0
331,246 - -0.3
331,246 - -0.0
331,246 - +0.6
331,320 + -0.7
331,320 + +0.1
331,320 + +0.1
331,320 + -1.6
331,320 + -0.6
331,320 + -0.1
331,320 + +0.7
331,320 + -0.0
331,320 + -0.4
331,320 + -0.9
331,320 + +0.2
331,320 + +0.1
331,320 + -0.4
331,320 + +0.7
331,320 + -0.0
331,320 + -2.0
331,320 + -0.3
331,321 - -0.4
331,321 - +1.4
331,321 - +1.3
331,321 - -0.5
331,321 - -3.1
331,321 - +1.4
331,321 - +0.9
331,321 - -0.0
331,321 - +1.8
331,321 - -1.4
331,321 - -1.8
331,321 - +0.3
331,321 - +0.3
331,321 - +0.5
331,321 - -1.0
331,321 - +0.6
331,321 - +0.4
331,321 - -0.7
331,321 - +0.8
331,321 - +0.5
331,321 - +1.8
331,321 - -0.0
331,321 - +0.1
331,353 - +0.2
331,353 - -0.8
331,397 + -0.4
331,398 - +0.1
331,442 + +0.7
331,442 + -0.7
331,443 - +0.1
331,464 + +0.4
331,464 + -0.4
331,465 - -0.4
331,471 - -0.4
331,477 + -0.7
331,477 + +0.3
331,477 + +0.4
331,477 + +1.0
331,477 + +0.4
331,477 + -0.2
331,477 + +0.6
331,477 + -0.4
331,477 + +0.1
331,478 - -0.2
331,478 - +0.1
331,478 - +0.3
331,478 - +0.7
331,478 - +0.7
331,482 - -0.7
331,494 + +0.5
331,494 + -0.1
331,498 + -0.4
331,498 + -0.1
331,498 + -0.6
331,498 + +0.8
331,499 - -0.6
331,499 - -0.9
331,499 - +0.2
331,535 - +0.8
331,535 - -0.8
331,557 + +0.2
331,590 + +2.0
331,590 + +0.3
331,590 + +2.6
331,590 + +0.3
331,590 + -0.9
331,590 + +2.8
331,590 + +0.1
331,590 + +0.0
331,590 + -0.1
331,591 - -0.5
331,591 - -0.0
331,591 - +0.3
331,591 - +1.1
331,591 - -0.5
331,591 - +1.0
331,599 + -0.1
331,599 + +0.1
331,599 + -0.2
331,599 + +0.2
331,599 + +0.4
331,599 + -0.2
331,599 + -0.0
331,599 + +0.2
331,599 + -1.1
331,599 + -0.2
331,599 + +0.5
331,599 + -0.2
331,599 + -0.9
331,599 + -0.8
331,600 - +0.9
331,600 - -0.4
331,600 - -0.6
331,600 - -1.1
331,600 - -0.2
331,600 - +1.8
331,600 - -0.3
331,600 - -0.0
331,600 - -0.3
331,600 - +0.6
331,600 - +0.7
331,600 - +0.7
331,600 - +0.8
331,601 + +1.1
331,601 + -0.1
331,601 + +0.4
331,601 + -1.0
331,601 + +0.3
331,601 + +0.9
331,601 + -0.1
331,602 - +0.6
331,602 - -0.2
331,602 - +1.6
331,602 - +0.1
331,602 - +0.9
331,602 - -0.0
331,602 - +0.2
331,602 - +0.5
331,622 + -0.4
331,622 + -0.0
331,623 - +0.8
331,657 - +0.3
331,657 - -0.4
331,657 - +0.1
331,665 + -0.4
331,666 - -0.3
331,785 + EX31_RS05880 0.30 +2.4
331,785 + EX31_RS05880 0.30 +1.1
331,786 - EX31_RS05880 0.30 -2.3
331,923 + EX31_RS05880 0.54 +0.3
331,924 - EX31_RS05880 0.54 -0.1
331,924 - EX31_RS05880 0.54 +1.0
332,151 + -1.4
332,151 + -0.0
332,151 + -0.1
332,152 - -0.3
332,276 + EX31_RS05885 0.21 +0.0
332,277 - EX31_RS05885 0.21 +0.4
332,372 - EX31_RS05885 0.43 +0.7
332,412 + EX31_RS05885 0.52 +0.0
332,474 + EX31_RS05885 0.66 +1.6
332,499 - EX31_RS05885 0.71 -2.0
332,528 + EX31_RS05885 0.78 +1.4
332,528 + EX31_RS05885 0.78 +1.0
332,529 - EX31_RS05885 0.78 +1.6
332,591 + +0.0
332,591 + -0.2
332,591 + +0.2
332,591 + -0.7
332,592 - +1.3
332,592 - +0.7
332,624 + -1.8
332,624 + +0.7
332,624 + +1.2
332,624 + +0.9
332,625 - +1.0
332,682 - +0.3
332,702 - -0.0
332,800 + +0.2
332,801 - +1.8
332,844 + +0.0
332,844 + +0.6
332,844 + +1.2
332,844 + +0.1
332,844 + -0.2
332,845 - +0.0
332,861 + +0.7
332,862 - -0.6
332,862 - -0.0
332,879 + -0.9
332,879 + -0.8
332,879 + +0.9
332,923 + EX31_RS05890 0.11 +0.5
332,997 + EX31_RS05890 0.22 -0.4
333,012 + EX31_RS05890 0.25 +1.2
333,082 + EX31_RS05890 0.35 +0.5
333,082 + EX31_RS05890 0.35 -0.9
333,085 + EX31_RS05890 0.36 +0.9
333,085 + EX31_RS05890 0.36 -0.8
333,085 + EX31_RS05890 0.36 -0.2
333,085 + EX31_RS05890 0.36 +0.6
333,085 + EX31_RS05890 0.36 +0.3
333,085 + EX31_RS05890 0.36 +0.1
333,085 + EX31_RS05890 0.36 -0.1
333,086 - EX31_RS05890 0.36 -0.3
333,086 - EX31_RS05890 0.36 -0.5
333,086 - EX31_RS05890 0.36 -1.0
333,183 + EX31_RS05890 0.51 -0.7
333,183 + EX31_RS05890 0.51 -1.3
333,184 - EX31_RS05890 0.51 +0.2
333,184 - EX31_RS05890 0.51 -0.1

Or see this region's nucleotide sequence