Strain Fitness in Rahnella sp. WP5 around EX31_RS05870

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05860 and EX31_RS05865 are separated by 121 nucleotidesEX31_RS05865 and EX31_RS05870 overlap by 11 nucleotidesEX31_RS05870 and EX31_RS05875 are separated by 78 nucleotides EX31_RS05860: EX31_RS05860 - glycine--tRNA ligase subunit alpha, at 327,759 to 328,694 _RS05860 EX31_RS05865: EX31_RS05865 - type II toxin-antitoxin system RelE/ParE family toxin, at 328,816 to 329,100 _RS05865 EX31_RS05870: EX31_RS05870 - plasmid stabilization protein, at 329,090 to 329,338 _RS05870 EX31_RS05875: EX31_RS05875 - autotransporter domain-containing esterase, at 329,417 to 331,423 _RS05875 Position (kb) 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 328.724 kb on - strandat 328.761 kb on - strandat 328.813 kb on + strandat 328.813 kb on + strandat 328.813 kb on + strandat 328.814 kb on - strandat 328.818 kb on - strandat 328.818 kb on - strandat 328.836 kb on + strandat 328.837 kb on - strandat 328.837 kb on - strandat 328.837 kb on - strandat 328.837 kb on - strandat 328.838 kb on + strandat 328.838 kb on + strandat 328.839 kb on - strandat 328.900 kb on + strand, within EX31_RS05865at 328.900 kb on + strand, within EX31_RS05865at 328.900 kb on + strand, within EX31_RS05865at 328.900 kb on + strand, within EX31_RS05865at 328.901 kb on - strand, within EX31_RS05865at 328.901 kb on - strand, within EX31_RS05865at 328.901 kb on - strand, within EX31_RS05865at 328.901 kb on - strand, within EX31_RS05865at 328.907 kb on + strand, within EX31_RS05865at 328.908 kb on - strand, within EX31_RS05865at 328.933 kb on + strand, within EX31_RS05865at 328.934 kb on - strand, within EX31_RS05865at 328.934 kb on - strand, within EX31_RS05865at 328.944 kb on + strand, within EX31_RS05865at 328.945 kb on - strand, within EX31_RS05865at 328.945 kb on - strand, within EX31_RS05865at 328.947 kb on - strand, within EX31_RS05865at 328.969 kb on + strand, within EX31_RS05865at 328.969 kb on + strand, within EX31_RS05865at 328.969 kb on + strand, within EX31_RS05865at 328.969 kb on + strand, within EX31_RS05865at 328.969 kb on + strand, within EX31_RS05865at 328.970 kb on - strand, within EX31_RS05865at 328.970 kb on - strand, within EX31_RS05865at 328.970 kb on - strand, within EX31_RS05865at 328.970 kb on - strand, within EX31_RS05865at 329.065 kb on + strand, within EX31_RS05865at 329.065 kb on + strand, within EX31_RS05865at 329.091 kb on + strandat 329.092 kb on - strandat 329.092 kb on - strandat 329.092 kb on - strandat 329.093 kb on + strandat 329.093 kb on + strandat 329.093 kb on + strandat 329.093 kb on + strandat 329.093 kb on + strandat 329.093 kb on + strandat 329.093 kb on + strandat 329.094 kb on - strandat 329.094 kb on - strandat 329.094 kb on - strandat 329.094 kb on - strandat 329.184 kb on + strand, within EX31_RS05870at 329.190 kb on + strand, within EX31_RS05870at 329.211 kb on + strand, within EX31_RS05870at 329.266 kb on + strand, within EX31_RS05870at 329.266 kb on + strand, within EX31_RS05870at 329.291 kb on + strand, within EX31_RS05870at 329.291 kb on + strand, within EX31_RS05870at 329.302 kb on + strand, within EX31_RS05870at 329.324 kb on + strandat 329.324 kb on + strandat 329.338 kb on + strandat 329.358 kb on + strandat 329.360 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.361 kb on + strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.362 kb on - strandat 329.374 kb on + strandat 329.374 kb on + strandat 329.408 kb on + strandat 329.412 kb on - strandat 329.445 kb on + strandat 329.446 kb on - strandat 329.528 kb on + strandat 329.543 kb on - strandat 329.543 kb on - strandat 329.622 kb on + strand, within EX31_RS05875at 329.622 kb on + strand, within EX31_RS05875at 329.622 kb on + strand, within EX31_RS05875at 329.623 kb on - strand, within EX31_RS05875at 329.623 kb on - strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.649 kb on + strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.650 kb on - strand, within EX31_RS05875at 329.755 kb on + strand, within EX31_RS05875at 329.756 kb on - strand, within EX31_RS05875at 329.808 kb on + strand, within EX31_RS05875at 329.808 kb on + strand, within EX31_RS05875at 329.808 kb on + strand, within EX31_RS05875at 329.808 kb on + strand, within EX31_RS05875at 329.808 kb on + strand, within EX31_RS05875at 329.808 kb on + strand, within EX31_RS05875at 329.932 kb on + strand, within EX31_RS05875at 329.932 kb on + strand, within EX31_RS05875at 329.932 kb on + strand, within EX31_RS05875at 329.933 kb on - strand, within EX31_RS05875at 329.955 kb on + strand, within EX31_RS05875at 329.956 kb on - strand, within EX31_RS05875at 330.051 kb on + strand, within EX31_RS05875at 330.051 kb on + strand, within EX31_RS05875at 330.057 kb on + strand, within EX31_RS05875at 330.057 kb on + strand, within EX31_RS05875at 330.057 kb on + strand, within EX31_RS05875at 330.057 kb on + strand, within EX31_RS05875at 330.058 kb on - strand, within EX31_RS05875at 330.058 kb on - strand, within EX31_RS05875at 330.079 kb on + strand, within EX31_RS05875at 330.079 kb on + strand, within EX31_RS05875at 330.080 kb on - strand, within EX31_RS05875at 330.100 kb on + strand, within EX31_RS05875at 330.100 kb on + strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.101 kb on - strand, within EX31_RS05875at 330.139 kb on + strand, within EX31_RS05875at 330.146 kb on - strand, within EX31_RS05875at 330.260 kb on - strand, within EX31_RS05875at 330.260 kb on - strand, within EX31_RS05875at 330.260 kb on - strand, within EX31_RS05875at 330.260 kb on - strand, within EX31_RS05875at 330.307 kb on + strand, within EX31_RS05875at 330.307 kb on + strand, within EX31_RS05875at 330.307 kb on + strand, within EX31_RS05875at 330.307 kb on + strand, within EX31_RS05875at 330.307 kb on + strand, within EX31_RS05875at 330.307 kb on + strand, within EX31_RS05875at 330.308 kb on - strand, within EX31_RS05875at 330.308 kb on - strand, within EX31_RS05875

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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328,724 - -0.5
328,761 - +0.3
328,813 + +0.4
328,813 + -0.1
328,813 + -0.0
328,814 - +0.6
328,818 - +0.9
328,818 - +0.2
328,836 + +0.6
328,837 - -0.6
328,837 - -1.4
328,837 - -1.4
328,837 - +0.6
328,838 + +0.7
328,838 + +0.8
328,839 - -0.2
328,900 + EX31_RS05865 0.29 -0.2
328,900 + EX31_RS05865 0.29 +0.1
328,900 + EX31_RS05865 0.29 +0.3
328,900 + EX31_RS05865 0.29 -0.6
328,901 - EX31_RS05865 0.30 -0.5
328,901 - EX31_RS05865 0.30 +0.5
328,901 - EX31_RS05865 0.30 -0.7
328,901 - EX31_RS05865 0.30 -0.5
328,907 + EX31_RS05865 0.32 -0.7
328,908 - EX31_RS05865 0.32 +0.1
328,933 + EX31_RS05865 0.41 +0.8
328,934 - EX31_RS05865 0.41 +0.2
328,934 - EX31_RS05865 0.41 +0.8
328,944 + EX31_RS05865 0.45 -1.0
328,945 - EX31_RS05865 0.45 +0.6
328,945 - EX31_RS05865 0.45 +0.2
328,947 - EX31_RS05865 0.46 +0.4
328,969 + EX31_RS05865 0.54 -0.8
328,969 + EX31_RS05865 0.54 -0.7
328,969 + EX31_RS05865 0.54 +0.7
328,969 + EX31_RS05865 0.54 +0.3
328,969 + EX31_RS05865 0.54 -0.5
328,970 - EX31_RS05865 0.54 -0.1
328,970 - EX31_RS05865 0.54 +0.1
328,970 - EX31_RS05865 0.54 -0.8
328,970 - EX31_RS05865 0.54 +0.3
329,065 + EX31_RS05865 0.87 +0.4
329,065 + EX31_RS05865 0.87 -0.2
329,091 + +0.6
329,092 - -0.2
329,092 - +0.6
329,092 - +0.2
329,093 + +0.7
329,093 + -1.0
329,093 + -0.5
329,093 + +1.1
329,093 + -0.3
329,093 + +0.5
329,093 + +0.6
329,094 - +0.7
329,094 - +1.8
329,094 - -0.3
329,094 - -1.0
329,184 + EX31_RS05870 0.38 +2.6
329,190 + EX31_RS05870 0.40 -0.8
329,211 + EX31_RS05870 0.49 -0.9
329,266 + EX31_RS05870 0.71 -0.4
329,266 + EX31_RS05870 0.71 +1.0
329,291 + EX31_RS05870 0.81 -0.9
329,291 + EX31_RS05870 0.81 -0.7
329,302 + EX31_RS05870 0.85 -0.8
329,324 + -0.2
329,324 + -0.1
329,338 + -1.3
329,358 + -0.7
329,360 + +0.2
329,361 + +0.3
329,361 + -1.4
329,361 + +0.2
329,361 + +0.5
329,361 + -0.2
329,361 + +1.6
329,361 + +0.0
329,361 + -1.8
329,361 + -0.4
329,361 + +0.6
329,361 + +0.8
329,361 + -1.1
329,361 + +0.2
329,361 + +0.6
329,362 - -0.5
329,362 - +0.7
329,362 - +0.1
329,362 - +0.4
329,362 - +0.6
329,362 - -1.0
329,362 - -0.6
329,362 - +0.6
329,362 - +2.1
329,362 - +0.6
329,362 - -0.3
329,362 - +0.1
329,362 - +0.2
329,362 - -1.5
329,362 - -0.0
329,362 - +0.2
329,362 - -0.9
329,362 - -0.1
329,374 + -0.4
329,374 + -0.1
329,408 + +0.9
329,412 - +0.8
329,445 + -1.1
329,446 - +0.1
329,528 + +0.6
329,543 - -0.3
329,543 - -0.7
329,622 + EX31_RS05875 0.10 +1.2
329,622 + EX31_RS05875 0.10 -0.5
329,622 + EX31_RS05875 0.10 -0.4
329,623 - EX31_RS05875 0.10 -1.0
329,623 - EX31_RS05875 0.10 -1.3
329,649 + EX31_RS05875 0.12 -0.5
329,649 + EX31_RS05875 0.12 +0.4
329,649 + EX31_RS05875 0.12 +1.2
329,649 + EX31_RS05875 0.12 +0.3
329,649 + EX31_RS05875 0.12 +1.1
329,649 + EX31_RS05875 0.12 +0.6
329,649 + EX31_RS05875 0.12 -1.0
329,649 + EX31_RS05875 0.12 +1.3
329,649 + EX31_RS05875 0.12 -0.0
329,649 + EX31_RS05875 0.12 +2.1
329,649 + EX31_RS05875 0.12 -0.3
329,649 + EX31_RS05875 0.12 +1.0
329,649 + EX31_RS05875 0.12 -1.1
329,649 + EX31_RS05875 0.12 +0.9
329,650 - EX31_RS05875 0.12 -0.9
329,650 - EX31_RS05875 0.12 -0.7
329,650 - EX31_RS05875 0.12 +0.3
329,650 - EX31_RS05875 0.12 -0.7
329,650 - EX31_RS05875 0.12 +0.7
329,650 - EX31_RS05875 0.12 -0.3
329,650 - EX31_RS05875 0.12 +0.6
329,650 - EX31_RS05875 0.12 -0.5
329,755 + EX31_RS05875 0.17 -0.8
329,756 - EX31_RS05875 0.17 -0.5
329,808 + EX31_RS05875 0.19 -1.9
329,808 + EX31_RS05875 0.19 +1.1
329,808 + EX31_RS05875 0.19 +0.3
329,808 + EX31_RS05875 0.19 +0.6
329,808 + EX31_RS05875 0.19 +1.2
329,808 + EX31_RS05875 0.19 -0.1
329,932 + EX31_RS05875 0.26 -0.0
329,932 + EX31_RS05875 0.26 -0.1
329,932 + EX31_RS05875 0.26 +0.6
329,933 - EX31_RS05875 0.26 -0.4
329,955 + EX31_RS05875 0.27 +0.5
329,956 - EX31_RS05875 0.27 +0.0
330,051 + EX31_RS05875 0.32 +0.4
330,051 + EX31_RS05875 0.32 -0.0
330,057 + EX31_RS05875 0.32 -0.8
330,057 + EX31_RS05875 0.32 -0.5
330,057 + EX31_RS05875 0.32 -0.2
330,057 + EX31_RS05875 0.32 +2.2
330,058 - EX31_RS05875 0.32 +1.6
330,058 - EX31_RS05875 0.32 -0.2
330,079 + EX31_RS05875 0.33 +0.6
330,079 + EX31_RS05875 0.33 +2.6
330,080 - EX31_RS05875 0.33 -1.0
330,100 + EX31_RS05875 0.34 +0.3
330,100 + EX31_RS05875 0.34 +1.1
330,101 - EX31_RS05875 0.34 -0.8
330,101 - EX31_RS05875 0.34 +0.3
330,101 - EX31_RS05875 0.34 +0.4
330,101 - EX31_RS05875 0.34 -0.6
330,101 - EX31_RS05875 0.34 +0.3
330,101 - EX31_RS05875 0.34 +0.7
330,101 - EX31_RS05875 0.34 +0.3
330,101 - EX31_RS05875 0.34 -1.1
330,139 + EX31_RS05875 0.36 -0.4
330,146 - EX31_RS05875 0.36 +0.0
330,260 - EX31_RS05875 0.42 -0.5
330,260 - EX31_RS05875 0.42 -2.0
330,260 - EX31_RS05875 0.42 -0.8
330,260 - EX31_RS05875 0.42 +0.9
330,307 + EX31_RS05875 0.44 -0.2
330,307 + EX31_RS05875 0.44 -0.6
330,307 + EX31_RS05875 0.44 +0.2
330,307 + EX31_RS05875 0.44 -0.8
330,307 + EX31_RS05875 0.44 -0.3
330,307 + EX31_RS05875 0.44 +2.6
330,308 - EX31_RS05875 0.44 +0.6
330,308 - EX31_RS05875 0.44 -0.3

Or see this region's nucleotide sequence