Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05860 and EX31_RS05865 are separated by 121 nucleotides EX31_RS05865 and EX31_RS05870 overlap by 11 nucleotides EX31_RS05870 and EX31_RS05875 are separated by 78 nucleotides
EX31_RS05860: EX31_RS05860 - glycine--tRNA ligase subunit alpha, at 327,759 to 328,694
_RS05860
EX31_RS05865: EX31_RS05865 - type II toxin-antitoxin system RelE/ParE family toxin, at 328,816 to 329,100
_RS05865
EX31_RS05870: EX31_RS05870 - plasmid stabilization protein, at 329,090 to 329,338
_RS05870
EX31_RS05875: EX31_RS05875 - autotransporter domain-containing esterase, at 329,417 to 331,423
_RS05875
Position (kb) 329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.724 kb on - strand at 328.761 kb on - strand at 328.813 kb on + strand at 328.813 kb on + strand at 328.813 kb on + strand at 328.814 kb on - strand at 328.818 kb on - strand at 328.818 kb on - strand at 328.836 kb on + strand at 328.837 kb on - strand at 328.837 kb on - strand at 328.837 kb on - strand at 328.837 kb on - strand at 328.838 kb on + strand at 328.838 kb on + strand at 328.839 kb on - strand at 328.900 kb on + strand, within EX31_RS05865 at 328.900 kb on + strand, within EX31_RS05865 at 328.900 kb on + strand, within EX31_RS05865 at 328.900 kb on + strand, within EX31_RS05865 at 328.901 kb on - strand, within EX31_RS05865 at 328.901 kb on - strand, within EX31_RS05865 at 328.901 kb on - strand, within EX31_RS05865 at 328.901 kb on - strand, within EX31_RS05865 at 328.907 kb on + strand, within EX31_RS05865 at 328.908 kb on - strand, within EX31_RS05865 at 328.933 kb on + strand, within EX31_RS05865 at 328.934 kb on - strand, within EX31_RS05865 at 328.934 kb on - strand, within EX31_RS05865 at 328.944 kb on + strand, within EX31_RS05865 at 328.945 kb on - strand, within EX31_RS05865 at 328.945 kb on - strand, within EX31_RS05865 at 328.947 kb on - strand, within EX31_RS05865 at 328.969 kb on + strand, within EX31_RS05865 at 328.969 kb on + strand, within EX31_RS05865 at 328.969 kb on + strand, within EX31_RS05865 at 328.969 kb on + strand, within EX31_RS05865 at 328.969 kb on + strand, within EX31_RS05865 at 328.970 kb on - strand, within EX31_RS05865 at 328.970 kb on - strand, within EX31_RS05865 at 328.970 kb on - strand, within EX31_RS05865 at 328.970 kb on - strand, within EX31_RS05865 at 329.065 kb on + strand, within EX31_RS05865 at 329.065 kb on + strand, within EX31_RS05865 at 329.091 kb on + strand at 329.092 kb on - strand at 329.092 kb on - strand at 329.092 kb on - strand at 329.093 kb on + strand at 329.093 kb on + strand at 329.093 kb on + strand at 329.093 kb on + strand at 329.093 kb on + strand at 329.093 kb on + strand at 329.093 kb on + strand at 329.094 kb on - strand at 329.094 kb on - strand at 329.094 kb on - strand at 329.094 kb on - strand at 329.184 kb on + strand, within EX31_RS05870 at 329.190 kb on + strand, within EX31_RS05870 at 329.211 kb on + strand, within EX31_RS05870 at 329.266 kb on + strand, within EX31_RS05870 at 329.266 kb on + strand, within EX31_RS05870 at 329.291 kb on + strand, within EX31_RS05870 at 329.291 kb on + strand, within EX31_RS05870 at 329.302 kb on + strand, within EX31_RS05870 at 329.324 kb on + strand at 329.324 kb on + strand at 329.338 kb on + strand at 329.358 kb on + strand at 329.360 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.361 kb on + strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.362 kb on - strand at 329.374 kb on + strand at 329.374 kb on + strand at 329.408 kb on + strand at 329.412 kb on - strand at 329.445 kb on + strand at 329.446 kb on - strand at 329.528 kb on + strand at 329.543 kb on - strand at 329.543 kb on - strand at 329.622 kb on + strand, within EX31_RS05875 at 329.622 kb on + strand, within EX31_RS05875 at 329.622 kb on + strand, within EX31_RS05875 at 329.623 kb on - strand, within EX31_RS05875 at 329.623 kb on - strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.649 kb on + strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.650 kb on - strand, within EX31_RS05875 at 329.755 kb on + strand, within EX31_RS05875 at 329.756 kb on - strand, within EX31_RS05875 at 329.808 kb on + strand, within EX31_RS05875 at 329.808 kb on + strand, within EX31_RS05875 at 329.808 kb on + strand, within EX31_RS05875 at 329.808 kb on + strand, within EX31_RS05875 at 329.808 kb on + strand, within EX31_RS05875 at 329.808 kb on + strand, within EX31_RS05875 at 329.932 kb on + strand, within EX31_RS05875 at 329.932 kb on + strand, within EX31_RS05875 at 329.932 kb on + strand, within EX31_RS05875 at 329.933 kb on - strand, within EX31_RS05875 at 329.955 kb on + strand, within EX31_RS05875 at 329.956 kb on - strand, within EX31_RS05875 at 330.051 kb on + strand, within EX31_RS05875 at 330.051 kb on + strand, within EX31_RS05875 at 330.057 kb on + strand, within EX31_RS05875 at 330.057 kb on + strand, within EX31_RS05875 at 330.057 kb on + strand, within EX31_RS05875 at 330.057 kb on + strand, within EX31_RS05875 at 330.058 kb on - strand, within EX31_RS05875 at 330.058 kb on - strand, within EX31_RS05875 at 330.079 kb on + strand, within EX31_RS05875 at 330.079 kb on + strand, within EX31_RS05875 at 330.080 kb on - strand, within EX31_RS05875 at 330.100 kb on + strand, within EX31_RS05875 at 330.100 kb on + strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.101 kb on - strand, within EX31_RS05875 at 330.139 kb on + strand, within EX31_RS05875 at 330.146 kb on - strand, within EX31_RS05875 at 330.260 kb on - strand, within EX31_RS05875 at 330.260 kb on - strand, within EX31_RS05875 at 330.260 kb on - strand, within EX31_RS05875 at 330.260 kb on - strand, within EX31_RS05875 at 330.307 kb on + strand, within EX31_RS05875 at 330.307 kb on + strand, within EX31_RS05875 at 330.307 kb on + strand, within EX31_RS05875 at 330.307 kb on + strand, within EX31_RS05875 at 330.307 kb on + strand, within EX31_RS05875 at 330.307 kb on + strand, within EX31_RS05875 at 330.308 kb on - strand, within EX31_RS05875 at 330.308 kb on - strand, within EX31_RS05875
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 328,724 - -0.5 328,761 - +0.3 328,813 + +0.4 328,813 + -0.1 328,813 + -0.0 328,814 - +0.6 328,818 - +0.9 328,818 - +0.2 328,836 + +0.6 328,837 - -0.6 328,837 - -1.4 328,837 - -1.4 328,837 - +0.6 328,838 + +0.7 328,838 + +0.8 328,839 - -0.2 328,900 + EX31_RS05865 0.29 -0.2 328,900 + EX31_RS05865 0.29 +0.1 328,900 + EX31_RS05865 0.29 +0.3 328,900 + EX31_RS05865 0.29 -0.6 328,901 - EX31_RS05865 0.30 -0.5 328,901 - EX31_RS05865 0.30 +0.5 328,901 - EX31_RS05865 0.30 -0.7 328,901 - EX31_RS05865 0.30 -0.5 328,907 + EX31_RS05865 0.32 -0.7 328,908 - EX31_RS05865 0.32 +0.1 328,933 + EX31_RS05865 0.41 +0.8 328,934 - EX31_RS05865 0.41 +0.2 328,934 - EX31_RS05865 0.41 +0.8 328,944 + EX31_RS05865 0.45 -1.0 328,945 - EX31_RS05865 0.45 +0.6 328,945 - EX31_RS05865 0.45 +0.2 328,947 - EX31_RS05865 0.46 +0.4 328,969 + EX31_RS05865 0.54 -0.8 328,969 + EX31_RS05865 0.54 -0.7 328,969 + EX31_RS05865 0.54 +0.7 328,969 + EX31_RS05865 0.54 +0.3 328,969 + EX31_RS05865 0.54 -0.5 328,970 - EX31_RS05865 0.54 -0.1 328,970 - EX31_RS05865 0.54 +0.1 328,970 - EX31_RS05865 0.54 -0.8 328,970 - EX31_RS05865 0.54 +0.3 329,065 + EX31_RS05865 0.87 +0.4 329,065 + EX31_RS05865 0.87 -0.2 329,091 + +0.6 329,092 - -0.2 329,092 - +0.6 329,092 - +0.2 329,093 + +0.7 329,093 + -1.0 329,093 + -0.5 329,093 + +1.1 329,093 + -0.3 329,093 + +0.5 329,093 + +0.6 329,094 - +0.7 329,094 - +1.8 329,094 - -0.3 329,094 - -1.0 329,184 + EX31_RS05870 0.38 +2.6 329,190 + EX31_RS05870 0.40 -0.8 329,211 + EX31_RS05870 0.49 -0.9 329,266 + EX31_RS05870 0.71 -0.4 329,266 + EX31_RS05870 0.71 +1.0 329,291 + EX31_RS05870 0.81 -0.9 329,291 + EX31_RS05870 0.81 -0.7 329,302 + EX31_RS05870 0.85 -0.8 329,324 + -0.2 329,324 + -0.1 329,338 + -1.3 329,358 + -0.7 329,360 + +0.2 329,361 + +0.3 329,361 + -1.4 329,361 + +0.2 329,361 + +0.5 329,361 + -0.2 329,361 + +1.6 329,361 + +0.0 329,361 + -1.8 329,361 + -0.4 329,361 + +0.6 329,361 + +0.8 329,361 + -1.1 329,361 + +0.2 329,361 + +0.6 329,362 - -0.5 329,362 - +0.7 329,362 - +0.1 329,362 - +0.4 329,362 - +0.6 329,362 - -1.0 329,362 - -0.6 329,362 - +0.6 329,362 - +2.1 329,362 - +0.6 329,362 - -0.3 329,362 - +0.1 329,362 - +0.2 329,362 - -1.5 329,362 - -0.0 329,362 - +0.2 329,362 - -0.9 329,362 - -0.1 329,374 + -0.4 329,374 + -0.1 329,408 + +0.9 329,412 - +0.8 329,445 + -1.1 329,446 - +0.1 329,528 + +0.6 329,543 - -0.3 329,543 - -0.7 329,622 + EX31_RS05875 0.10 +1.2 329,622 + EX31_RS05875 0.10 -0.5 329,622 + EX31_RS05875 0.10 -0.4 329,623 - EX31_RS05875 0.10 -1.0 329,623 - EX31_RS05875 0.10 -1.3 329,649 + EX31_RS05875 0.12 -0.5 329,649 + EX31_RS05875 0.12 +0.4 329,649 + EX31_RS05875 0.12 +1.2 329,649 + EX31_RS05875 0.12 +0.3 329,649 + EX31_RS05875 0.12 +1.1 329,649 + EX31_RS05875 0.12 +0.6 329,649 + EX31_RS05875 0.12 -1.0 329,649 + EX31_RS05875 0.12 +1.3 329,649 + EX31_RS05875 0.12 -0.0 329,649 + EX31_RS05875 0.12 +2.1 329,649 + EX31_RS05875 0.12 -0.3 329,649 + EX31_RS05875 0.12 +1.0 329,649 + EX31_RS05875 0.12 -1.1 329,649 + EX31_RS05875 0.12 +0.9 329,650 - EX31_RS05875 0.12 -0.9 329,650 - EX31_RS05875 0.12 -0.7 329,650 - EX31_RS05875 0.12 +0.3 329,650 - EX31_RS05875 0.12 -0.7 329,650 - EX31_RS05875 0.12 +0.7 329,650 - EX31_RS05875 0.12 -0.3 329,650 - EX31_RS05875 0.12 +0.6 329,650 - EX31_RS05875 0.12 -0.5 329,755 + EX31_RS05875 0.17 -0.8 329,756 - EX31_RS05875 0.17 -0.5 329,808 + EX31_RS05875 0.19 -1.9 329,808 + EX31_RS05875 0.19 +1.1 329,808 + EX31_RS05875 0.19 +0.3 329,808 + EX31_RS05875 0.19 +0.6 329,808 + EX31_RS05875 0.19 +1.2 329,808 + EX31_RS05875 0.19 -0.1 329,932 + EX31_RS05875 0.26 -0.0 329,932 + EX31_RS05875 0.26 -0.1 329,932 + EX31_RS05875 0.26 +0.6 329,933 - EX31_RS05875 0.26 -0.4 329,955 + EX31_RS05875 0.27 +0.5 329,956 - EX31_RS05875 0.27 +0.0 330,051 + EX31_RS05875 0.32 +0.4 330,051 + EX31_RS05875 0.32 -0.0 330,057 + EX31_RS05875 0.32 -0.8 330,057 + EX31_RS05875 0.32 -0.5 330,057 + EX31_RS05875 0.32 -0.2 330,057 + EX31_RS05875 0.32 +2.2 330,058 - EX31_RS05875 0.32 +1.6 330,058 - EX31_RS05875 0.32 -0.2 330,079 + EX31_RS05875 0.33 +0.6 330,079 + EX31_RS05875 0.33 +2.6 330,080 - EX31_RS05875 0.33 -1.0 330,100 + EX31_RS05875 0.34 +0.3 330,100 + EX31_RS05875 0.34 +1.1 330,101 - EX31_RS05875 0.34 -0.8 330,101 - EX31_RS05875 0.34 +0.3 330,101 - EX31_RS05875 0.34 +0.4 330,101 - EX31_RS05875 0.34 -0.6 330,101 - EX31_RS05875 0.34 +0.3 330,101 - EX31_RS05875 0.34 +0.7 330,101 - EX31_RS05875 0.34 +0.3 330,101 - EX31_RS05875 0.34 -1.1 330,139 + EX31_RS05875 0.36 -0.4 330,146 - EX31_RS05875 0.36 +0.0 330,260 - EX31_RS05875 0.42 -0.5 330,260 - EX31_RS05875 0.42 -2.0 330,260 - EX31_RS05875 0.42 -0.8 330,260 - EX31_RS05875 0.42 +0.9 330,307 + EX31_RS05875 0.44 -0.2 330,307 + EX31_RS05875 0.44 -0.6 330,307 + EX31_RS05875 0.44 +0.2 330,307 + EX31_RS05875 0.44 -0.8 330,307 + EX31_RS05875 0.44 -0.3 330,307 + EX31_RS05875 0.44 +2.6 330,308 - EX31_RS05875 0.44 +0.6 330,308 - EX31_RS05875 0.44 -0.3
Or see this region's nucleotide sequence