Strain Fitness in Rahnella sp. WP5 around EX31_RS05730

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05720 and EX31_RS05725 are separated by 87 nucleotidesEX31_RS05725 and EX31_RS05730 are separated by 131 nucleotidesEX31_RS05730 and EX31_RS05735 are separated by 35 nucleotidesEX31_RS05735 and EX31_RS05740 are separated by 6 nucleotides EX31_RS05720: EX31_RS05720 - L-idonate 5-dehydrogenase, at 295,259 to 296,290 _RS05720 EX31_RS05725: EX31_RS05725 - DJ-1/PfpI family protein, at 296,378 to 296,974 _RS05725 EX31_RS05730: EX31_RS05730 - isochorismatase family protein, at 297,106 to 297,660 _RS05730 EX31_RS05735: EX31_RS05735 - helix-turn-helix domain-containing protein, at 297,696 to 298,610 _RS05735 EX31_RS05740: EX31_RS05740 - acyltransferase, at 298,617 to 299,612 _RS05740 Position (kb) 297 298Strain fitness (log2 ratio) -2 -1 0 1 2 3at 296.110 kb on + strand, within EX31_RS05720at 296.111 kb on - strand, within EX31_RS05720at 296.111 kb on - strand, within EX31_RS05720at 296.174 kb on - strand, within EX31_RS05720at 296.243 kb on + strandat 296.244 kb on - strandat 296.244 kb on - strandat 296.303 kb on + strandat 296.355 kb on + strandat 296.377 kb on + strandat 296.462 kb on - strand, within EX31_RS05725at 296.496 kb on + strand, within EX31_RS05725at 296.496 kb on + strand, within EX31_RS05725at 296.497 kb on - strand, within EX31_RS05725at 296.497 kb on - strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.529 kb on - strand, within EX31_RS05725at 296.529 kb on - strand, within EX31_RS05725at 296.583 kb on + strand, within EX31_RS05725at 296.641 kb on + strand, within EX31_RS05725at 296.721 kb on + strand, within EX31_RS05725at 296.722 kb on - strand, within EX31_RS05725at 296.756 kb on + strand, within EX31_RS05725at 296.757 kb on - strand, within EX31_RS05725at 296.757 kb on - strand, within EX31_RS05725at 296.775 kb on + strand, within EX31_RS05725at 296.775 kb on + strand, within EX31_RS05725at 296.776 kb on - strand, within EX31_RS05725at 296.776 kb on - strand, within EX31_RS05725at 296.777 kb on + strand, within EX31_RS05725at 296.777 kb on + strand, within EX31_RS05725at 296.777 kb on + strand, within EX31_RS05725at 296.778 kb on - strand, within EX31_RS05725at 296.778 kb on - strand, within EX31_RS05725at 296.801 kb on + strand, within EX31_RS05725at 296.801 kb on + strand, within EX31_RS05725at 296.802 kb on - strand, within EX31_RS05725at 296.802 kb on - strand, within EX31_RS05725at 296.802 kb on - strand, within EX31_RS05725at 296.820 kb on + strand, within EX31_RS05725at 296.820 kb on + strand, within EX31_RS05725at 296.820 kb on + strand, within EX31_RS05725at 296.821 kb on - strand, within EX31_RS05725at 296.821 kb on - strand, within EX31_RS05725at 296.821 kb on - strand, within EX31_RS05725at 296.836 kb on - strand, within EX31_RS05725at 296.836 kb on - strand, within EX31_RS05725at 296.836 kb on - strand, within EX31_RS05725at 296.853 kb on + strand, within EX31_RS05725at 296.917 kb on + strandat 296.942 kb on + strandat 296.943 kb on - strandat 297.081 kb on - strandat 297.126 kb on - strandat 297.156 kb on + strandat 297.156 kb on + strandat 297.156 kb on + strandat 297.156 kb on + strandat 297.183 kb on - strand, within EX31_RS05730at 297.348 kb on + strand, within EX31_RS05730at 297.432 kb on + strand, within EX31_RS05730at 297.438 kb on + strand, within EX31_RS05730at 297.664 kb on + strandat 297.695 kb on + strandat 297.695 kb on + strandat 297.695 kb on + strandat 297.695 kb on + strandat 297.695 kb on + strandat 297.695 kb on + strandat 297.695 kb on + strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.696 kb on - strandat 297.712 kb on - strandat 297.712 kb on - strandat 297.742 kb on + strandat 297.742 kb on + strandat 297.743 kb on - strandat 297.743 kb on - strandat 297.798 kb on + strand, within EX31_RS05735at 297.798 kb on + strand, within EX31_RS05735at 297.798 kb on + strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.799 kb on - strand, within EX31_RS05735at 297.853 kb on + strand, within EX31_RS05735at 297.854 kb on - strand, within EX31_RS05735at 297.854 kb on - strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.009 kb on + strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.010 kb on - strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.013 kb on + strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.014 kb on - strand, within EX31_RS05735at 298.141 kb on + strand, within EX31_RS05735at 298.269 kb on + strand, within EX31_RS05735at 298.269 kb on + strand, within EX31_RS05735at 298.270 kb on - strand, within EX31_RS05735at 298.270 kb on - strand, within EX31_RS05735at 298.270 kb on - strand, within EX31_RS05735at 298.270 kb on - strand, within EX31_RS05735at 298.270 kb on - strand, within EX31_RS05735at 298.322 kb on + strand, within EX31_RS05735at 298.463 kb on + strand, within EX31_RS05735at 298.479 kb on + strand, within EX31_RS05735at 298.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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296,110 + EX31_RS05720 0.82 +0.9
296,111 - EX31_RS05720 0.83 +0.0
296,111 - EX31_RS05720 0.83 +0.6
296,174 - EX31_RS05720 0.89 +0.1
296,243 + -0.1
296,244 - +0.6
296,244 - -0.9
296,303 + -0.0
296,355 + -1.7
296,377 + +0.7
296,462 - EX31_RS05725 0.14 +0.2
296,496 + EX31_RS05725 0.20 -0.4
296,496 + EX31_RS05725 0.20 +0.6
296,497 - EX31_RS05725 0.20 -0.4
296,497 - EX31_RS05725 0.20 -0.6
296,528 + EX31_RS05725 0.25 +1.0
296,528 + EX31_RS05725 0.25 +0.3
296,528 + EX31_RS05725 0.25 +0.8
296,528 + EX31_RS05725 0.25 +1.6
296,528 + EX31_RS05725 0.25 -0.9
296,529 - EX31_RS05725 0.25 -0.9
296,529 - EX31_RS05725 0.25 +0.3
296,583 + EX31_RS05725 0.34 +0.9
296,641 + EX31_RS05725 0.44 +0.1
296,721 + EX31_RS05725 0.57 +0.0
296,722 - EX31_RS05725 0.58 +0.6
296,756 + EX31_RS05725 0.63 +0.6
296,757 - EX31_RS05725 0.63 +0.4
296,757 - EX31_RS05725 0.63 -0.9
296,775 + EX31_RS05725 0.66 +0.7
296,775 + EX31_RS05725 0.66 +0.2
296,776 - EX31_RS05725 0.67 +0.6
296,776 - EX31_RS05725 0.67 +0.4
296,777 + EX31_RS05725 0.67 -0.8
296,777 + EX31_RS05725 0.67 +0.6
296,777 + EX31_RS05725 0.67 -0.1
296,778 - EX31_RS05725 0.67 +0.8
296,778 - EX31_RS05725 0.67 -0.2
296,801 + EX31_RS05725 0.71 +0.8
296,801 + EX31_RS05725 0.71 +0.2
296,802 - EX31_RS05725 0.71 -0.0
296,802 - EX31_RS05725 0.71 +0.6
296,802 - EX31_RS05725 0.71 -1.0
296,820 + EX31_RS05725 0.74 +0.1
296,820 + EX31_RS05725 0.74 -0.4
296,820 + EX31_RS05725 0.74 +0.1
296,821 - EX31_RS05725 0.74 +0.4
296,821 - EX31_RS05725 0.74 +0.2
296,821 - EX31_RS05725 0.74 +0.1
296,836 - EX31_RS05725 0.77 -0.1
296,836 - EX31_RS05725 0.77 -0.5
296,836 - EX31_RS05725 0.77 -0.2
296,853 + EX31_RS05725 0.80 +0.7
296,917 + +0.6
296,942 + +0.9
296,943 - +1.4
297,081 - +0.4
297,126 - +1.1
297,156 + +0.9
297,156 + -1.4
297,156 + -1.3
297,156 + +0.2
297,183 - EX31_RS05730 0.14 -0.4
297,348 + EX31_RS05730 0.44 -0.4
297,432 + EX31_RS05730 0.59 +0.6
297,438 + EX31_RS05730 0.60 -0.4
297,664 + +0.3
297,695 + +0.2
297,695 + -0.2
297,695 + +0.7
297,695 + +0.8
297,695 + +0.7
297,695 + +0.9
297,695 + +0.1
297,696 - +0.1
297,696 - -1.0
297,696 - -0.3
297,696 - -1.7
297,696 - -0.0
297,696 - +0.1
297,696 - -0.3
297,696 - +0.1
297,696 - +1.8
297,712 - +0.9
297,712 - +0.8
297,742 + -0.9
297,742 + -0.2
297,743 - -0.3
297,743 - -1.0
297,798 + EX31_RS05735 0.11 +0.4
297,798 + EX31_RS05735 0.11 -1.0
297,798 + EX31_RS05735 0.11 +0.1
297,799 - EX31_RS05735 0.11 -0.0
297,799 - EX31_RS05735 0.11 +2.0
297,799 - EX31_RS05735 0.11 +0.3
297,799 - EX31_RS05735 0.11 -0.3
297,799 - EX31_RS05735 0.11 +0.4
297,799 - EX31_RS05735 0.11 +0.3
297,799 - EX31_RS05735 0.11 +0.6
297,799 - EX31_RS05735 0.11 +1.6
297,799 - EX31_RS05735 0.11 +0.2
297,799 - EX31_RS05735 0.11 -0.7
297,799 - EX31_RS05735 0.11 +0.6
297,853 + EX31_RS05735 0.17 +0.2
297,854 - EX31_RS05735 0.17 -0.2
297,854 - EX31_RS05735 0.17 +0.0
298,009 + EX31_RS05735 0.34 +0.6
298,009 + EX31_RS05735 0.34 +1.2
298,009 + EX31_RS05735 0.34 -2.3
298,009 + EX31_RS05735 0.34 +1.0
298,009 + EX31_RS05735 0.34 +0.5
298,009 + EX31_RS05735 0.34 +0.7
298,009 + EX31_RS05735 0.34 +0.4
298,009 + EX31_RS05735 0.34 +0.2
298,009 + EX31_RS05735 0.34 -0.8
298,009 + EX31_RS05735 0.34 -0.7
298,009 + EX31_RS05735 0.34 +0.6
298,009 + EX31_RS05735 0.34 -0.2
298,009 + EX31_RS05735 0.34 -0.3
298,009 + EX31_RS05735 0.34 -0.4
298,009 + EX31_RS05735 0.34 +0.4
298,009 + EX31_RS05735 0.34 +0.6
298,010 - EX31_RS05735 0.34 +0.3
298,010 - EX31_RS05735 0.34 -0.2
298,010 - EX31_RS05735 0.34 -0.6
298,010 - EX31_RS05735 0.34 -1.3
298,010 - EX31_RS05735 0.34 -0.4
298,010 - EX31_RS05735 0.34 +0.7
298,010 - EX31_RS05735 0.34 +0.3
298,010 - EX31_RS05735 0.34 +0.8
298,010 - EX31_RS05735 0.34 -0.2
298,010 - EX31_RS05735 0.34 -0.9
298,010 - EX31_RS05735 0.34 +0.1
298,010 - EX31_RS05735 0.34 -1.5
298,010 - EX31_RS05735 0.34 +0.0
298,010 - EX31_RS05735 0.34 -2.4
298,010 - EX31_RS05735 0.34 +0.4
298,010 - EX31_RS05735 0.34 +0.9
298,010 - EX31_RS05735 0.34 -0.3
298,010 - EX31_RS05735 0.34 +0.1
298,013 + EX31_RS05735 0.35 +1.6
298,013 + EX31_RS05735 0.35 +0.6
298,013 + EX31_RS05735 0.35 +1.4
298,013 + EX31_RS05735 0.35 +0.1
298,013 + EX31_RS05735 0.35 +0.5
298,013 + EX31_RS05735 0.35 +0.6
298,013 + EX31_RS05735 0.35 +0.6
298,013 + EX31_RS05735 0.35 -0.3
298,014 - EX31_RS05735 0.35 -0.3
298,014 - EX31_RS05735 0.35 +1.3
298,014 - EX31_RS05735 0.35 -1.0
298,014 - EX31_RS05735 0.35 -0.7
298,014 - EX31_RS05735 0.35 -0.2
298,014 - EX31_RS05735 0.35 +1.4
298,014 - EX31_RS05735 0.35 -0.5
298,014 - EX31_RS05735 0.35 +0.9
298,141 + EX31_RS05735 0.49 +0.1
298,269 + EX31_RS05735 0.63 +1.9
298,269 + EX31_RS05735 0.63 -0.0
298,270 - EX31_RS05735 0.63 +1.4
298,270 - EX31_RS05735 0.63 -0.1
298,270 - EX31_RS05735 0.63 -0.1
298,270 - EX31_RS05735 0.63 -1.1
298,270 - EX31_RS05735 0.63 -0.4
298,322 + EX31_RS05735 0.68 -1.2
298,463 + EX31_RS05735 0.84 +0.6
298,479 + EX31_RS05735 0.86 -0.8
298,641 + +3.4

Or see this region's nucleotide sequence