Strain Fitness in Rahnella sp. WP5 around EX31_RS05355

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS05350 and EX31_RS05355 are separated by 92 nucleotidesEX31_RS05355 and EX31_RS05365 are separated by 376 nucleotides EX31_RS05350: EX31_RS05350 - amino acid permease, at 213,260 to 214,759 _RS05350 EX31_RS05355: EX31_RS05355 - malate dehydrogenase (quinone), at 214,852 to 216,504 _RS05355 EX31_RS05365: EX31_RS05365 - malate:quinone oxidoreductase, at 216,881 to 218,530 _RS05365 Position (kb) 214 215 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 213.862 kb on + strand, within EX31_RS05350at 213.909 kb on + strand, within EX31_RS05350at 213.911 kb on + strand, within EX31_RS05350at 213.911 kb on + strand, within EX31_RS05350at 213.911 kb on + strand, within EX31_RS05350at 213.911 kb on + strand, within EX31_RS05350at 213.912 kb on - strand, within EX31_RS05350at 213.912 kb on - strand, within EX31_RS05350at 213.912 kb on - strand, within EX31_RS05350at 213.912 kb on - strand, within EX31_RS05350at 213.962 kb on - strand, within EX31_RS05350at 213.962 kb on - strand, within EX31_RS05350at 213.962 kb on - strand, within EX31_RS05350at 213.989 kb on + strand, within EX31_RS05350at 213.989 kb on + strand, within EX31_RS05350at 213.989 kb on + strand, within EX31_RS05350at 213.990 kb on - strand, within EX31_RS05350at 213.990 kb on - strand, within EX31_RS05350at 213.990 kb on - strand, within EX31_RS05350at 213.990 kb on - strand, within EX31_RS05350at 214.059 kb on + strand, within EX31_RS05350at 214.065 kb on + strand, within EX31_RS05350at 214.065 kb on + strand, within EX31_RS05350at 214.065 kb on + strand, within EX31_RS05350at 214.066 kb on - strand, within EX31_RS05350at 214.066 kb on - strand, within EX31_RS05350at 214.066 kb on - strand, within EX31_RS05350at 214.066 kb on - strand, within EX31_RS05350at 214.066 kb on - strand, within EX31_RS05350at 214.085 kb on + strand, within EX31_RS05350at 214.085 kb on + strand, within EX31_RS05350at 214.085 kb on + strand, within EX31_RS05350at 214.085 kb on + strand, within EX31_RS05350at 214.085 kb on + strand, within EX31_RS05350at 214.086 kb on - strand, within EX31_RS05350at 214.195 kb on + strand, within EX31_RS05350at 214.196 kb on - strand, within EX31_RS05350at 214.208 kb on - strand, within EX31_RS05350at 214.285 kb on + strand, within EX31_RS05350at 214.305 kb on + strand, within EX31_RS05350at 214.306 kb on - strand, within EX31_RS05350at 214.317 kb on + strand, within EX31_RS05350at 214.318 kb on - strand, within EX31_RS05350at 214.341 kb on + strand, within EX31_RS05350at 214.348 kb on + strand, within EX31_RS05350at 214.349 kb on - strand, within EX31_RS05350at 214.349 kb on - strand, within EX31_RS05350at 214.349 kb on - strand, within EX31_RS05350at 214.358 kb on - strand, within EX31_RS05350at 214.358 kb on - strand, within EX31_RS05350at 214.358 kb on - strand, within EX31_RS05350at 214.396 kb on + strand, within EX31_RS05350at 214.396 kb on + strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.397 kb on - strand, within EX31_RS05350at 214.399 kb on + strand, within EX31_RS05350at 214.399 kb on + strand, within EX31_RS05350at 214.399 kb on + strand, within EX31_RS05350at 214.430 kb on + strand, within EX31_RS05350at 214.453 kb on + strand, within EX31_RS05350at 214.483 kb on + strand, within EX31_RS05350at 214.484 kb on - strand, within EX31_RS05350at 214.552 kb on + strand, within EX31_RS05350at 214.552 kb on + strand, within EX31_RS05350at 214.553 kb on - strand, within EX31_RS05350at 214.553 kb on - strand, within EX31_RS05350at 214.553 kb on - strand, within EX31_RS05350at 214.553 kb on - strand, within EX31_RS05350at 214.553 kb on - strand, within EX31_RS05350at 214.555 kb on + strand, within EX31_RS05350at 214.555 kb on + strand, within EX31_RS05350at 214.556 kb on - strand, within EX31_RS05350at 214.556 kb on - strand, within EX31_RS05350at 214.556 kb on - strand, within EX31_RS05350at 214.556 kb on - strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.571 kb on + strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.572 kb on - strand, within EX31_RS05350at 214.573 kb on + strand, within EX31_RS05350at 214.590 kb on + strand, within EX31_RS05350at 214.590 kb on + strand, within EX31_RS05350at 214.590 kb on + strand, within EX31_RS05350at 214.619 kb on + strandat 214.619 kb on + strandat 214.620 kb on - strandat 214.620 kb on - strandat 214.620 kb on - strandat 214.625 kb on - strandat 214.628 kb on + strandat 214.629 kb on - strandat 214.629 kb on - strandat 214.649 kb on - strandat 214.783 kb on + strandat 214.783 kb on + strandat 214.783 kb on + strandat 214.783 kb on + strandat 214.783 kb on + strandat 214.783 kb on + strandat 214.784 kb on - strandat 214.791 kb on + strandat 214.840 kb on - strandat 214.840 kb on - strandat 214.840 kb on - strandat 214.853 kb on + strandat 214.853 kb on + strandat 214.853 kb on + strandat 214.854 kb on - strandat 214.854 kb on - strandat 214.854 kb on - strandat 214.972 kb on - strandat 215.025 kb on + strand, within EX31_RS05355at 215.025 kb on + strand, within EX31_RS05355at 215.025 kb on + strand, within EX31_RS05355at 215.033 kb on + strand, within EX31_RS05355at 215.169 kb on + strand, within EX31_RS05355at 215.169 kb on + strand, within EX31_RS05355at 215.169 kb on + strand, within EX31_RS05355at 215.170 kb on - strand, within EX31_RS05355at 215.170 kb on - strand, within EX31_RS05355at 215.213 kb on - strand, within EX31_RS05355at 215.380 kb on - strand, within EX31_RS05355at 215.380 kb on - strand, within EX31_RS05355at 215.467 kb on - strand, within EX31_RS05355at 215.467 kb on - strand, within EX31_RS05355at 215.772 kb on + strand, within EX31_RS05355at 216.155 kb on + strand, within EX31_RS05355at 216.155 kb on + strand, within EX31_RS05355at 216.156 kb on - strand, within EX31_RS05355at 216.162 kb on + strand, within EX31_RS05355at 216.244 kb on - strand, within EX31_RS05355at 216.244 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.246 kb on - strand, within EX31_RS05355at 216.286 kb on - strand, within EX31_RS05355at 216.336 kb on + strand, within EX31_RS05355at 216.337 kb on - strand, within EX31_RS05355at 216.371 kb on + strandat 216.371 kb on + strandat 216.371 kb on + strandat 216.371 kb on + strandat 216.372 kb on - strandat 216.384 kb on + strandat 216.393 kb on + strandat 216.393 kb on + strandat 216.393 kb on + strandat 216.393 kb on + strandat 216.394 kb on - strandat 216.394 kb on - strandat 216.394 kb on - strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.415 kb on + strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.416 kb on - strandat 216.487 kb on - strandat 216.493 kb on + strandat 216.493 kb on + strandat 216.493 kb on + strandat 216.493 kb on + strandat 216.493 kb on + strandat 216.494 kb on - strandat 216.494 kb on - strandat 216.494 kb on - strandat 216.494 kb on - strandat 216.519 kb on + strandat 216.520 kb on - strandat 216.520 kb on - strandat 216.520 kb on - strandat 216.637 kb on + strandat 216.644 kb on - strandat 216.790 kb on + strandat 216.790 kb on + strandat 216.790 kb on + strandat 216.790 kb on + strandat 216.790 kb on + strandat 216.790 kb on + strandat 216.791 kb on - strandat 216.791 kb on - strandat 216.791 kb on - strandat 216.856 kb on + strandat 216.857 kb on - strandat 216.883 kb on - strandat 216.883 kb on - strandat 216.883 kb on - strandat 216.883 kb on - strandat 217.059 kb on + strand, within EX31_RS05365at 217.137 kb on + strand, within EX31_RS05365at 217.138 kb on - strand, within EX31_RS05365at 217.329 kb on + strand, within EX31_RS05365at 217.330 kb on - strand, within EX31_RS05365at 217.330 kb on - strand, within EX31_RS05365at 217.330 kb on - strand, within EX31_RS05365at 217.330 kb on - strand, within EX31_RS05365at 217.330 kb on - strand, within EX31_RS05365at 217.330 kb on - strand, within EX31_RS05365at 217.337 kb on + strand, within EX31_RS05365at 217.337 kb on + strand, within EX31_RS05365at 217.337 kb on + strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.338 kb on - strand, within EX31_RS05365at 217.386 kb on + strand, within EX31_RS05365at 217.387 kb on - strand, within EX31_RS05365at 217.387 kb on - strand, within EX31_RS05365at 217.387 kb on - strand, within EX31_RS05365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
213,862 + EX31_RS05350 0.40 -0.3
213,909 + EX31_RS05350 0.43 +0.5
213,911 + EX31_RS05350 0.43 +1.0
213,911 + EX31_RS05350 0.43 +1.3
213,911 + EX31_RS05350 0.43 +0.4
213,911 + EX31_RS05350 0.43 +0.1
213,912 - EX31_RS05350 0.43 +0.5
213,912 - EX31_RS05350 0.43 -2.2
213,912 - EX31_RS05350 0.43 -0.2
213,912 - EX31_RS05350 0.43 +0.8
213,962 - EX31_RS05350 0.47 +0.1
213,962 - EX31_RS05350 0.47 +0.9
213,962 - EX31_RS05350 0.47 +0.8
213,989 + EX31_RS05350 0.49 -0.5
213,989 + EX31_RS05350 0.49 +0.3
213,989 + EX31_RS05350 0.49 -0.3
213,990 - EX31_RS05350 0.49 -0.5
213,990 - EX31_RS05350 0.49 +0.6
213,990 - EX31_RS05350 0.49 -0.5
213,990 - EX31_RS05350 0.49 +0.3
214,059 + EX31_RS05350 0.53 -0.8
214,065 + EX31_RS05350 0.54 -0.8
214,065 + EX31_RS05350 0.54 -0.1
214,065 + EX31_RS05350 0.54 +0.5
214,066 - EX31_RS05350 0.54 -0.6
214,066 - EX31_RS05350 0.54 -0.0
214,066 - EX31_RS05350 0.54 -0.3
214,066 - EX31_RS05350 0.54 +1.7
214,066 - EX31_RS05350 0.54 +0.1
214,085 + EX31_RS05350 0.55 +1.4
214,085 + EX31_RS05350 0.55 +0.5
214,085 + EX31_RS05350 0.55 +1.6
214,085 + EX31_RS05350 0.55 -2.2
214,085 + EX31_RS05350 0.55 +0.5
214,086 - EX31_RS05350 0.55 +0.7
214,195 + EX31_RS05350 0.62 +0.5
214,196 - EX31_RS05350 0.62 +0.7
214,208 - EX31_RS05350 0.63 +1.5
214,285 + EX31_RS05350 0.68 +0.4
214,305 + EX31_RS05350 0.70 -0.2
214,306 - EX31_RS05350 0.70 +0.3
214,317 + EX31_RS05350 0.70 +0.3
214,318 - EX31_RS05350 0.71 +1.4
214,341 + EX31_RS05350 0.72 -0.5
214,348 + EX31_RS05350 0.73 +0.3
214,349 - EX31_RS05350 0.73 -0.3
214,349 - EX31_RS05350 0.73 +0.5
214,349 - EX31_RS05350 0.73 +0.5
214,358 - EX31_RS05350 0.73 +0.8
214,358 - EX31_RS05350 0.73 +1.5
214,358 - EX31_RS05350 0.73 -0.2
214,396 + EX31_RS05350 0.76 +0.9
214,396 + EX31_RS05350 0.76 +0.1
214,397 - EX31_RS05350 0.76 +0.8
214,397 - EX31_RS05350 0.76 -0.3
214,397 - EX31_RS05350 0.76 -0.8
214,397 - EX31_RS05350 0.76 +0.4
214,397 - EX31_RS05350 0.76 +0.1
214,397 - EX31_RS05350 0.76 +1.5
214,397 - EX31_RS05350 0.76 -0.0
214,399 + EX31_RS05350 0.76 +0.1
214,399 + EX31_RS05350 0.76 +0.1
214,399 + EX31_RS05350 0.76 +1.4
214,430 + EX31_RS05350 0.78 -1.0
214,453 + EX31_RS05350 0.80 +0.3
214,483 + EX31_RS05350 0.82 +0.6
214,484 - EX31_RS05350 0.82 +0.4
214,552 + EX31_RS05350 0.86 +0.5
214,552 + EX31_RS05350 0.86 +0.7
214,553 - EX31_RS05350 0.86 +1.2
214,553 - EX31_RS05350 0.86 -0.0
214,553 - EX31_RS05350 0.86 +0.0
214,553 - EX31_RS05350 0.86 +2.6
214,553 - EX31_RS05350 0.86 -0.1
214,555 + EX31_RS05350 0.86 +0.9
214,555 + EX31_RS05350 0.86 +0.7
214,556 - EX31_RS05350 0.86 +0.6
214,556 - EX31_RS05350 0.86 +0.5
214,556 - EX31_RS05350 0.86 +2.7
214,556 - EX31_RS05350 0.86 -0.6
214,571 + EX31_RS05350 0.87 +0.4
214,571 + EX31_RS05350 0.87 +0.7
214,571 + EX31_RS05350 0.87 +0.3
214,571 + EX31_RS05350 0.87 -0.2
214,571 + EX31_RS05350 0.87 +1.8
214,571 + EX31_RS05350 0.87 +0.4
214,571 + EX31_RS05350 0.87 -2.6
214,571 + EX31_RS05350 0.87 -0.1
214,572 - EX31_RS05350 0.87 +0.3
214,572 - EX31_RS05350 0.87 +0.3
214,572 - EX31_RS05350 0.87 -0.2
214,572 - EX31_RS05350 0.87 +0.1
214,572 - EX31_RS05350 0.87 -0.3
214,572 - EX31_RS05350 0.87 -0.1
214,572 - EX31_RS05350 0.87 -1.3
214,572 - EX31_RS05350 0.87 +0.2
214,572 - EX31_RS05350 0.87 -0.1
214,573 + EX31_RS05350 0.88 -2.5
214,590 + EX31_RS05350 0.89 +0.3
214,590 + EX31_RS05350 0.89 +0.5
214,590 + EX31_RS05350 0.89 +0.1
214,619 + +0.7
214,619 + +0.3
214,620 - -1.0
214,620 - -0.4
214,620 - +0.5
214,625 - -0.0
214,628 + -0.1
214,629 - +1.3
214,629 - +0.3
214,649 - +1.1
214,783 + -0.6
214,783 + -0.9
214,783 + +0.7
214,783 + -0.2
214,783 + -0.8
214,783 + +1.4
214,784 - -0.4
214,791 + -0.3
214,840 - -0.3
214,840 - -0.3
214,840 - +1.1
214,853 + +0.5
214,853 + +0.2
214,853 + +0.5
214,854 - +1.9
214,854 - -1.9
214,854 - +0.7
214,972 - -0.8
215,025 + EX31_RS05355 0.10 +0.3
215,025 + EX31_RS05355 0.10 -0.7
215,025 + EX31_RS05355 0.10 -1.4
215,033 + EX31_RS05355 0.11 -1.6
215,169 + EX31_RS05355 0.19 +0.9
215,169 + EX31_RS05355 0.19 +1.2
215,169 + EX31_RS05355 0.19 -0.3
215,170 - EX31_RS05355 0.19 -1.0
215,170 - EX31_RS05355 0.19 -0.8
215,213 - EX31_RS05355 0.22 -0.7
215,380 - EX31_RS05355 0.32 -0.0
215,380 - EX31_RS05355 0.32 -0.8
215,467 - EX31_RS05355 0.37 +0.4
215,467 - EX31_RS05355 0.37 -0.1
215,772 + EX31_RS05355 0.56 +0.2
216,155 + EX31_RS05355 0.79 -1.0
216,155 + EX31_RS05355 0.79 +0.5
216,156 - EX31_RS05355 0.79 -1.2
216,162 + EX31_RS05355 0.79 -0.1
216,244 - EX31_RS05355 0.84 -0.6
216,244 - EX31_RS05355 0.84 -0.5
216,246 - EX31_RS05355 0.84 -0.2
216,246 - EX31_RS05355 0.84 +0.4
216,246 - EX31_RS05355 0.84 +0.1
216,246 - EX31_RS05355 0.84 +0.6
216,246 - EX31_RS05355 0.84 -0.1
216,246 - EX31_RS05355 0.84 -0.2
216,246 - EX31_RS05355 0.84 -0.5
216,246 - EX31_RS05355 0.84 -0.1
216,246 - EX31_RS05355 0.84 -0.0
216,246 - EX31_RS05355 0.84 -0.7
216,246 - EX31_RS05355 0.84 +1.5
216,246 - EX31_RS05355 0.84 -0.0
216,246 - EX31_RS05355 0.84 +0.4
216,246 - EX31_RS05355 0.84 -0.8
216,246 - EX31_RS05355 0.84 -1.9
216,286 - EX31_RS05355 0.87 -1.1
216,336 + EX31_RS05355 0.90 +0.7
216,337 - EX31_RS05355 0.90 -0.3
216,371 + -0.8
216,371 + +0.5
216,371 + -0.8
216,371 + +0.5
216,372 - +0.6
216,384 + -0.6
216,393 + +0.9
216,393 + +0.1
216,393 + -0.6
216,393 + +2.3
216,394 - +0.5
216,394 - +0.2
216,394 - -1.5
216,415 + +0.5
216,415 + +0.3
216,415 + +0.7
216,415 + -1.3
216,415 + +1.2
216,415 + +0.1
216,415 + +1.0
216,415 + +0.2
216,415 + -1.3
216,415 + +1.5
216,415 + +0.8
216,415 + +1.1
216,416 - -0.5
216,416 - -1.5
216,416 - -0.3
216,416 - +0.6
216,416 - +0.0
216,416 - +0.2
216,416 - -0.6
216,416 - +0.6
216,416 - +0.3
216,416 - -2.5
216,416 - +1.0
216,416 - -1.1
216,416 - +0.5
216,416 - -0.4
216,416 - -3.2
216,416 - -0.9
216,416 - -0.9
216,416 - -0.8
216,416 - +0.3
216,487 - -1.4
216,493 + -1.0
216,493 + +0.4
216,493 + +0.4
216,493 + -1.5
216,493 + -0.1
216,494 - -0.8
216,494 - -0.8
216,494 - +0.3
216,494 - -0.2
216,519 + -0.1
216,520 - +0.3
216,520 - +0.5
216,520 - -0.1
216,637 + +0.0
216,644 - +0.5
216,790 + +0.4
216,790 + +0.6
216,790 + +0.5
216,790 + -0.3
216,790 + -0.2
216,790 + +2.5
216,791 - +1.0
216,791 - +0.1
216,791 - +0.0
216,856 + -1.0
216,857 - +0.2
216,883 - +0.3
216,883 - +0.5
216,883 - -0.5
216,883 - +0.2
217,059 + EX31_RS05365 0.11 +0.2
217,137 + EX31_RS05365 0.16 +0.3
217,138 - EX31_RS05365 0.16 +0.1
217,329 + EX31_RS05365 0.27 +0.5
217,330 - EX31_RS05365 0.27 +0.2
217,330 - EX31_RS05365 0.27 +0.1
217,330 - EX31_RS05365 0.27 -0.1
217,330 - EX31_RS05365 0.27 +0.9
217,330 - EX31_RS05365 0.27 -0.4
217,330 - EX31_RS05365 0.27 +0.3
217,337 + EX31_RS05365 0.28 +0.4
217,337 + EX31_RS05365 0.28 -0.2
217,337 + EX31_RS05365 0.28 -1.0
217,338 - EX31_RS05365 0.28 -0.5
217,338 - EX31_RS05365 0.28 +1.0
217,338 - EX31_RS05365 0.28 +0.2
217,338 - EX31_RS05365 0.28 +0.9
217,338 - EX31_RS05365 0.28 -0.1
217,338 - EX31_RS05365 0.28 -0.5
217,338 - EX31_RS05365 0.28 -1.6
217,386 + EX31_RS05365 0.31 -0.1
217,387 - EX31_RS05365 0.31 +0.5
217,387 - EX31_RS05365 0.31 +0.4
217,387 - EX31_RS05365 0.31 +1.0

Or see this region's nucleotide sequence