Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04915 and EX31_RS04920 are separated by 46 nucleotides EX31_RS04920 and EX31_RS04925 are separated by 97 nucleotides EX31_RS04925 and EX31_RS04930 are separated by 53 nucleotides
EX31_RS04915: EX31_RS04915 - pimeloyl-ACP methyl ester esterase BioH, at 108,870 to 109,652
_RS04915
EX31_RS04920: EX31_RS04920 - DNA utilization protein GntX, at 109,699 to 110,388
_RS04920
EX31_RS04925: EX31_RS04925 - Fe-S biogenesis protein NfuA, at 110,486 to 111,061
_RS04925
EX31_RS04930: EX31_RS04930 - 4-alpha-glucanotransferase, at 111,115 to 113,190
_RS04930
Position (kb) 110
111
112 Strain fitness (log2 ratio) -2
-1
0
1
2 at 109.505 kb on - strand, within EX31_RS04915 at 109.646 kb on + strand at 109.646 kb on + strand at 109.646 kb on + strand at 109.647 kb on - strand at 109.647 kb on - strand at 109.647 kb on - strand at 109.652 kb on + strand at 109.652 kb on + strand at 109.653 kb on - strand at 109.653 kb on - strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.657 kb on + strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.658 kb on - strand at 109.703 kb on + strand at 109.703 kb on + strand at 109.704 kb on - strand at 109.704 kb on - strand at 109.727 kb on + strand at 109.728 kb on - strand at 109.728 kb on - strand at 109.865 kb on + strand, within EX31_RS04920 at 109.865 kb on + strand, within EX31_RS04920 at 109.866 kb on - strand, within EX31_RS04920 at 109.907 kb on - strand, within EX31_RS04920 at 109.907 kb on - strand, within EX31_RS04920 at 109.985 kb on + strand, within EX31_RS04920 at 109.986 kb on - strand, within EX31_RS04920 at 110.075 kb on - strand, within EX31_RS04920 at 110.092 kb on - strand, within EX31_RS04920 at 110.092 kb on - strand, within EX31_RS04920 at 110.092 kb on - strand, within EX31_RS04920 at 110.092 kb on - strand, within EX31_RS04920 at 110.143 kb on + strand, within EX31_RS04920 at 110.143 kb on + strand, within EX31_RS04920 at 110.144 kb on - strand, within EX31_RS04920 at 110.302 kb on - strand, within EX31_RS04920 at 110.331 kb on + strand at 110.364 kb on + strand at 110.365 kb on - strand at 110.365 kb on - strand at 110.365 kb on - strand at 110.365 kb on - strand at 110.378 kb on + strand at 110.379 kb on - strand at 110.386 kb on + strand at 110.386 kb on + strand at 110.387 kb on - strand at 110.400 kb on + strand at 110.400 kb on + strand at 110.400 kb on + strand at 110.401 kb on - strand at 110.445 kb on + strand at 110.445 kb on + strand at 110.445 kb on + strand at 110.446 kb on - strand at 110.446 kb on - strand at 110.446 kb on - strand at 110.458 kb on + strand at 110.458 kb on + strand at 110.459 kb on - strand at 110.459 kb on - strand at 110.459 kb on - strand at 110.463 kb on + strand at 110.471 kb on + strand at 110.485 kb on + strand at 110.486 kb on - strand at 110.494 kb on + strand at 110.495 kb on - strand at 110.612 kb on + strand, within EX31_RS04925 at 110.631 kb on + strand, within EX31_RS04925 at 110.632 kb on - strand, within EX31_RS04925 at 110.689 kb on - strand, within EX31_RS04925 at 110.700 kb on - strand, within EX31_RS04925 at 110.700 kb on - strand, within EX31_RS04925 at 110.700 kb on - strand, within EX31_RS04925 at 110.783 kb on - strand, within EX31_RS04925 at 110.853 kb on + strand, within EX31_RS04925 at 111.057 kb on - strand at 111.057 kb on - strand at 111.057 kb on - strand at 111.057 kb on - strand at 111.116 kb on + strand at 111.136 kb on + strand at 111.136 kb on + strand at 111.136 kb on + strand at 111.160 kb on - strand at 111.219 kb on - strand at 111.315 kb on - strand at 111.315 kb on - strand at 111.411 kb on + strand, within EX31_RS04930 at 111.411 kb on + strand, within EX31_RS04930 at 111.411 kb on + strand, within EX31_RS04930 at 111.429 kb on + strand, within EX31_RS04930 at 111.429 kb on + strand, within EX31_RS04930 at 111.430 kb on - strand, within EX31_RS04930 at 111.430 kb on - strand, within EX31_RS04930 at 111.502 kb on + strand, within EX31_RS04930 at 111.503 kb on - strand, within EX31_RS04930 at 111.521 kb on + strand, within EX31_RS04930 at 111.521 kb on + strand, within EX31_RS04930 at 111.522 kb on - strand, within EX31_RS04930 at 111.538 kb on + strand, within EX31_RS04930 at 111.539 kb on - strand, within EX31_RS04930 at 111.578 kb on + strand, within EX31_RS04930 at 111.578 kb on + strand, within EX31_RS04930 at 111.579 kb on - strand, within EX31_RS04930 at 111.624 kb on - strand, within EX31_RS04930 at 111.624 kb on - strand, within EX31_RS04930 at 111.635 kb on + strand, within EX31_RS04930 at 111.636 kb on - strand, within EX31_RS04930 at 111.636 kb on - strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.641 kb on + strand, within EX31_RS04930 at 111.642 kb on - strand, within EX31_RS04930 at 111.642 kb on - strand, within EX31_RS04930 at 111.776 kb on + strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.777 kb on - strand, within EX31_RS04930 at 111.889 kb on + strand, within EX31_RS04930 at 111.890 kb on - strand, within EX31_RS04930 at 112.007 kb on + strand, within EX31_RS04930 at 112.007 kb on + strand, within EX31_RS04930 at 112.008 kb on - strand, within EX31_RS04930
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 109,505 - EX31_RS04915 0.81 -0.8 109,646 + +0.3 109,646 + -0.8 109,646 + +0.6 109,647 - +0.1 109,647 - +0.8 109,647 - +0.3 109,652 + +1.2 109,652 + -1.3 109,653 - -1.0 109,653 - +0.2 109,657 + -0.6 109,657 + -0.1 109,657 + +0.4 109,657 + +0.6 109,657 + -0.5 109,657 + -0.2 109,657 + -0.3 109,657 + +0.9 109,657 + +0.0 109,657 + +1.5 109,658 - +2.5 109,658 - -0.7 109,658 - -0.7 109,658 - +0.3 109,658 - +0.7 109,658 - +0.2 109,658 - -1.7 109,658 - +0.8 109,658 - +0.0 109,703 + -0.9 109,703 + +0.7 109,704 - +1.0 109,704 - -0.2 109,727 + +0.4 109,728 - +0.6 109,728 - -2.7 109,865 + EX31_RS04920 0.24 +0.1 109,865 + EX31_RS04920 0.24 -0.2 109,866 - EX31_RS04920 0.24 +0.4 109,907 - EX31_RS04920 0.30 +0.3 109,907 - EX31_RS04920 0.30 -0.9 109,985 + EX31_RS04920 0.41 +1.5 109,986 - EX31_RS04920 0.42 -0.7 110,075 - EX31_RS04920 0.54 +0.3 110,092 - EX31_RS04920 0.57 -0.6 110,092 - EX31_RS04920 0.57 +0.8 110,092 - EX31_RS04920 0.57 +0.7 110,092 - EX31_RS04920 0.57 +0.0 110,143 + EX31_RS04920 0.64 +1.1 110,143 + EX31_RS04920 0.64 +1.5 110,144 - EX31_RS04920 0.64 -0.2 110,302 - EX31_RS04920 0.87 +0.3 110,331 + +0.4 110,364 + -0.3 110,365 - -2.0 110,365 - -0.8 110,365 - +1.1 110,365 - +0.5 110,378 + +0.6 110,379 - -1.3 110,386 + +1.4 110,386 + -0.0 110,387 - -0.3 110,400 + +1.7 110,400 + -0.7 110,400 + -0.5 110,401 - -0.3 110,445 + +0.6 110,445 + +0.2 110,445 + -2.3 110,446 - +0.7 110,446 - -0.1 110,446 - +1.5 110,458 + +0.2 110,458 + -1.5 110,459 - -0.5 110,459 - +0.3 110,459 - -0.2 110,463 + +0.5 110,471 + +1.2 110,485 + -1.1 110,486 - -1.2 110,494 + -2.3 110,495 - -0.3 110,612 + EX31_RS04925 0.22 -0.4 110,631 + EX31_RS04925 0.25 -0.1 110,632 - EX31_RS04925 0.25 +1.5 110,689 - EX31_RS04925 0.35 -1.1 110,700 - EX31_RS04925 0.37 -2.4 110,700 - EX31_RS04925 0.37 -0.7 110,700 - EX31_RS04925 0.37 -0.8 110,783 - EX31_RS04925 0.52 +0.0 110,853 + EX31_RS04925 0.64 +0.3 111,057 - +0.5 111,057 - +0.4 111,057 - +0.6 111,057 - +0.6 111,116 + +0.0 111,136 + +0.1 111,136 + +0.0 111,136 + +0.6 111,160 - +0.9 111,219 - -0.1 111,315 - +1.9 111,315 - -0.2 111,411 + EX31_RS04930 0.14 +0.4 111,411 + EX31_RS04930 0.14 -0.7 111,411 + EX31_RS04930 0.14 -0.1 111,429 + EX31_RS04930 0.15 -0.4 111,429 + EX31_RS04930 0.15 -0.0 111,430 - EX31_RS04930 0.15 -1.0 111,430 - EX31_RS04930 0.15 +0.6 111,502 + EX31_RS04930 0.19 -0.0 111,503 - EX31_RS04930 0.19 -0.7 111,521 + EX31_RS04930 0.20 -0.1 111,521 + EX31_RS04930 0.20 +0.3 111,522 - EX31_RS04930 0.20 -0.2 111,538 + EX31_RS04930 0.20 +0.5 111,539 - EX31_RS04930 0.20 +1.8 111,578 + EX31_RS04930 0.22 +0.7 111,578 + EX31_RS04930 0.22 -0.4 111,579 - EX31_RS04930 0.22 +0.5 111,624 - EX31_RS04930 0.25 -0.9 111,624 - EX31_RS04930 0.25 +1.0 111,635 + EX31_RS04930 0.25 +0.3 111,636 - EX31_RS04930 0.25 +0.5 111,636 - EX31_RS04930 0.25 +0.3 111,641 + EX31_RS04930 0.25 -0.9 111,641 + EX31_RS04930 0.25 +0.5 111,641 + EX31_RS04930 0.25 +0.6 111,641 + EX31_RS04930 0.25 +1.7 111,641 + EX31_RS04930 0.25 +0.5 111,642 - EX31_RS04930 0.25 -1.9 111,642 - EX31_RS04930 0.25 +0.1 111,776 + EX31_RS04930 0.32 +0.2 111,777 - EX31_RS04930 0.32 -0.2 111,777 - EX31_RS04930 0.32 -0.8 111,777 - EX31_RS04930 0.32 -1.0 111,777 - EX31_RS04930 0.32 +0.6 111,777 - EX31_RS04930 0.32 -0.5 111,777 - EX31_RS04930 0.32 -1.6 111,777 - EX31_RS04930 0.32 -0.6 111,777 - EX31_RS04930 0.32 +1.3 111,889 + EX31_RS04930 0.37 +1.0 111,890 - EX31_RS04930 0.37 +1.5 112,007 + EX31_RS04930 0.43 -0.4 112,007 + EX31_RS04930 0.43 +1.3 112,008 - EX31_RS04930 0.43 +0.5
Or see this region's nucleotide sequence