Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04715 and EX31_RS04720 are separated by 127 nucleotides EX31_RS04720 and EX31_RS04725 are separated by 57 nucleotides EX31_RS04725 and EX31_RS04730 are separated by 348 nucleotides
EX31_RS04715: EX31_RS04715 - SPOR domain-containing protein, at 58,971 to 60,026
_RS04715
EX31_RS04720: EX31_RS04720 - 3-dehydroquinate synthase, at 60,154 to 61,236
_RS04720
EX31_RS04725: EX31_RS04725 - shikimate kinase AroK, at 61,294 to 61,815
_RS04725
EX31_RS04730: EX31_RS04730 - DNA uptake porin HofQ, at 62,164 to 63,426
_RS04730
Position (kb)
60
61
62 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 59.183 kb on + strand, within EX31_RS04715 at 59.225 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.240 kb on + strand, within EX31_RS04715 at 59.241 kb on - strand, within EX31_RS04715 at 59.241 kb on - strand, within EX31_RS04715 at 59.241 kb on - strand, within EX31_RS04715 at 59.241 kb on - strand, within EX31_RS04715 at 59.241 kb on - strand, within EX31_RS04715 at 59.354 kb on + strand, within EX31_RS04715 at 59.354 kb on + strand, within EX31_RS04715 at 59.354 kb on + strand, within EX31_RS04715 at 59.354 kb on + strand, within EX31_RS04715 at 59.354 kb on + strand, within EX31_RS04715 at 59.354 kb on + strand, within EX31_RS04715 at 59.355 kb on - strand, within EX31_RS04715 at 59.355 kb on - strand, within EX31_RS04715 at 59.355 kb on - strand, within EX31_RS04715 at 59.355 kb on - strand, within EX31_RS04715 at 59.355 kb on - strand, within EX31_RS04715 at 59.375 kb on + strand, within EX31_RS04715 at 59.375 kb on + strand, within EX31_RS04715 at 59.375 kb on + strand, within EX31_RS04715 at 59.375 kb on + strand, within EX31_RS04715 at 59.376 kb on - strand, within EX31_RS04715 at 59.376 kb on - strand, within EX31_RS04715 at 59.376 kb on - strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.415 kb on + strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.416 kb on - strand, within EX31_RS04715 at 59.456 kb on + strand, within EX31_RS04715 at 59.456 kb on + strand, within EX31_RS04715 at 59.457 kb on - strand, within EX31_RS04715 at 59.457 kb on - strand, within EX31_RS04715 at 59.582 kb on + strand, within EX31_RS04715 at 59.583 kb on - strand, within EX31_RS04715 at 59.583 kb on - strand, within EX31_RS04715 at 59.621 kb on + strand, within EX31_RS04715 at 59.730 kb on - strand, within EX31_RS04715 at 59.730 kb on - strand, within EX31_RS04715 at 59.733 kb on - strand, within EX31_RS04715 at 59.733 kb on - strand, within EX31_RS04715 at 59.783 kb on + strand, within EX31_RS04715 at 59.784 kb on - strand, within EX31_RS04715 at 59.784 kb on - strand, within EX31_RS04715 at 59.880 kb on + strand, within EX31_RS04715 at 59.914 kb on + strand, within EX31_RS04715 at 59.914 kb on + strand, within EX31_RS04715 at 59.914 kb on + strand, within EX31_RS04715 at 59.914 kb on + strand, within EX31_RS04715 at 59.914 kb on + strand, within EX31_RS04715 at 59.915 kb on - strand, within EX31_RS04715 at 59.915 kb on - strand, within EX31_RS04715 at 59.915 kb on - strand, within EX31_RS04715 at 59.915 kb on - strand, within EX31_RS04715 at 59.915 kb on - strand, within EX31_RS04715 at 59.925 kb on + strand at 60.015 kb on + strand at 60.016 kb on - strand at 60.028 kb on + strand at 60.028 kb on + strand at 60.028 kb on + strand at 60.028 kb on + strand at 60.028 kb on + strand at 60.029 kb on - strand at 60.029 kb on - strand at 60.077 kb on + strand at 60.077 kb on + strand at 60.078 kb on - strand at 60.078 kb on - strand at 60.093 kb on - strand at 60.094 kb on + strand at 60.095 kb on - strand at 60.114 kb on + strand at 60.114 kb on + strand at 60.141 kb on + strand at 60.142 kb on - strand at 60.142 kb on - strand at 61.259 kb on - strand at 61.292 kb on - strand at 61.292 kb on - strand at 61.292 kb on - strand at 61.300 kb on - strand at 61.300 kb on - strand at 61.312 kb on - strand at 61.312 kb on - strand at 61.312 kb on - strand at 61.312 kb on - strand at 61.312 kb on - strand at 61.363 kb on - strand, within EX31_RS04725 at 61.386 kb on - strand, within EX31_RS04725 at 61.386 kb on - strand, within EX31_RS04725 at 61.448 kb on - strand, within EX31_RS04725 at 61.448 kb on - strand, within EX31_RS04725 at 61.448 kb on - strand, within EX31_RS04725 at 61.448 kb on - strand, within EX31_RS04725 at 61.448 kb on - strand, within EX31_RS04725 at 61.451 kb on - strand, within EX31_RS04725 at 61.501 kb on - strand, within EX31_RS04725 at 61.501 kb on - strand, within EX31_RS04725 at 61.667 kb on - strand, within EX31_RS04725 at 61.667 kb on - strand, within EX31_RS04725 at 61.745 kb on - strand, within EX31_RS04725 at 61.745 kb on - strand, within EX31_RS04725 at 61.745 kb on - strand, within EX31_RS04725 at 61.745 kb on - strand, within EX31_RS04725 at 61.798 kb on - strand at 61.798 kb on - strand at 61.798 kb on - strand at 61.829 kb on - strand at 61.829 kb on - strand at 61.829 kb on - strand at 61.832 kb on - strand at 61.832 kb on - strand at 61.832 kb on - strand at 61.832 kb on - strand at 61.851 kb on - strand at 61.886 kb on - strand at 61.908 kb on - strand at 61.908 kb on - strand at 61.908 kb on - strand at 61.908 kb on - strand at 61.908 kb on - strand at 61.909 kb on + strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.910 kb on - strand at 61.932 kb on - strand at 61.948 kb on + strand at 61.949 kb on - strand at 61.949 kb on - strand at 61.949 kb on - strand at 61.949 kb on - strand at 61.965 kb on - strand at 61.998 kb on - strand at 62.023 kb on - strand at 62.026 kb on - strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.060 kb on + strand at 62.061 kb on - strand at 62.061 kb on - strand at 62.061 kb on - strand at 62.065 kb on + strand at 62.065 kb on + strand at 62.065 kb on + strand at 62.066 kb on - strand at 62.066 kb on - strand at 62.130 kb on + strand at 62.131 kb on - strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.133 kb on + strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.134 kb on - strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.142 kb on + strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.143 kb on - strand at 62.165 kb on + strand at 62.179 kb on + strand at 62.180 kb on - strand at 62.228 kb on + strand at 62.228 kb on + strand at 62.228 kb on + strand at 62.228 kb on + strand at 62.228 kb on + strand at 62.228 kb on + strand at 62.229 kb on - strand at 62.229 kb on - strand at 62.229 kb on - strand at 62.229 kb on - strand at 62.229 kb on - strand at 62.229 kb on - strand at 62.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 59,183 + EX31_RS04715 0.20 -1.5 59,225 + EX31_RS04715 0.24 +0.8 59,240 + EX31_RS04715 0.25 -1.2 59,240 + EX31_RS04715 0.25 -2.6 59,240 + EX31_RS04715 0.25 +0.9 59,240 + EX31_RS04715 0.25 -1.5 59,240 + EX31_RS04715 0.25 -0.2 59,240 + EX31_RS04715 0.25 -0.8 59,240 + EX31_RS04715 0.25 +0.0 59,240 + EX31_RS04715 0.25 -0.1 59,241 - EX31_RS04715 0.26 +1.3 59,241 - EX31_RS04715 0.26 -0.9 59,241 - EX31_RS04715 0.26 +1.5 59,241 - EX31_RS04715 0.26 +0.3 59,241 - EX31_RS04715 0.26 +0.3 59,354 + EX31_RS04715 0.36 -1.3 59,354 + EX31_RS04715 0.36 -1.3 59,354 + EX31_RS04715 0.36 -1.6 59,354 + EX31_RS04715 0.36 +0.3 59,354 + EX31_RS04715 0.36 -0.2 59,354 + EX31_RS04715 0.36 -0.8 59,355 - EX31_RS04715 0.36 -0.8 59,355 - EX31_RS04715 0.36 -0.1 59,355 - EX31_RS04715 0.36 +1.1 59,355 - EX31_RS04715 0.36 +1.7 59,355 - EX31_RS04715 0.36 +0.4 59,375 + EX31_RS04715 0.38 -1.3 59,375 + EX31_RS04715 0.38 -0.1 59,375 + EX31_RS04715 0.38 +0.5 59,375 + EX31_RS04715 0.38 -1.1 59,376 - EX31_RS04715 0.38 -0.1 59,376 - EX31_RS04715 0.38 -0.7 59,376 - EX31_RS04715 0.38 +0.0 59,415 + EX31_RS04715 0.42 +0.7 59,415 + EX31_RS04715 0.42 -0.3 59,415 + EX31_RS04715 0.42 +0.3 59,415 + EX31_RS04715 0.42 -2.0 59,415 + EX31_RS04715 0.42 -0.5 59,415 + EX31_RS04715 0.42 -0.1 59,415 + EX31_RS04715 0.42 +0.3 59,415 + EX31_RS04715 0.42 +0.5 59,415 + EX31_RS04715 0.42 +0.2 59,415 + EX31_RS04715 0.42 -1.1 59,416 - EX31_RS04715 0.42 +0.1 59,416 - EX31_RS04715 0.42 -0.6 59,416 - EX31_RS04715 0.42 +0.9 59,416 - EX31_RS04715 0.42 -0.7 59,416 - EX31_RS04715 0.42 -0.3 59,416 - EX31_RS04715 0.42 +0.7 59,416 - EX31_RS04715 0.42 +1.5 59,416 - EX31_RS04715 0.42 +0.7 59,416 - EX31_RS04715 0.42 -2.2 59,416 - EX31_RS04715 0.42 +0.7 59,416 - EX31_RS04715 0.42 -0.2 59,416 - EX31_RS04715 0.42 +0.8 59,416 - EX31_RS04715 0.42 -0.3 59,416 - EX31_RS04715 0.42 +0.5 59,456 + EX31_RS04715 0.46 +0.3 59,456 + EX31_RS04715 0.46 -0.8 59,457 - EX31_RS04715 0.46 -0.5 59,457 - EX31_RS04715 0.46 -0.5 59,582 + EX31_RS04715 0.58 -1.5 59,583 - EX31_RS04715 0.58 -0.1 59,583 - EX31_RS04715 0.58 -0.3 59,621 + EX31_RS04715 0.62 -0.7 59,730 - EX31_RS04715 0.72 +0.0 59,730 - EX31_RS04715 0.72 +0.2 59,733 - EX31_RS04715 0.72 -0.5 59,733 - EX31_RS04715 0.72 -0.1 59,783 + EX31_RS04715 0.77 -0.2 59,784 - EX31_RS04715 0.77 -1.3 59,784 - EX31_RS04715 0.77 -1.4 59,880 + EX31_RS04715 0.86 +0.9 59,914 + EX31_RS04715 0.89 -0.1 59,914 + EX31_RS04715 0.89 -2.7 59,914 + EX31_RS04715 0.89 -2.5 59,914 + EX31_RS04715 0.89 -0.3 59,914 + EX31_RS04715 0.89 -0.2 59,915 - EX31_RS04715 0.89 +0.5 59,915 - EX31_RS04715 0.89 +0.1 59,915 - EX31_RS04715 0.89 -2.2 59,915 - EX31_RS04715 0.89 +0.2 59,915 - EX31_RS04715 0.89 -0.1 59,925 + -1.8 60,015 + -0.1 60,016 - -1.3 60,028 + +1.0 60,028 + -0.2 60,028 + +0.2 60,028 + +0.8 60,028 + -0.4 60,029 - -1.3 60,029 - +0.5 60,077 + -1.3 60,077 + -1.9 60,078 - +1.5 60,078 - +0.8 60,093 - +0.3 60,094 + +0.0 60,095 - +1.0 60,114 + -0.4 60,114 + -1.3 60,141 + -1.4 60,142 - +0.1 60,142 - -0.2 61,259 - +1.4 61,292 - +3.1 61,292 - +0.8 61,292 - -0.7 61,300 - +0.8 61,300 - +0.3 61,312 - -0.0 61,312 - -0.8 61,312 - -1.0 61,312 - -0.5 61,312 - -1.3 61,363 - EX31_RS04725 0.13 -0.1 61,386 - EX31_RS04725 0.18 -0.5 61,386 - EX31_RS04725 0.18 -0.1 61,448 - EX31_RS04725 0.30 +0.9 61,448 - EX31_RS04725 0.30 -0.1 61,448 - EX31_RS04725 0.30 +0.7 61,448 - EX31_RS04725 0.30 -0.8 61,448 - EX31_RS04725 0.30 +0.2 61,451 - EX31_RS04725 0.30 +0.5 61,501 - EX31_RS04725 0.40 -0.8 61,501 - EX31_RS04725 0.40 +0.9 61,667 - EX31_RS04725 0.71 +1.5 61,667 - EX31_RS04725 0.71 +0.2 61,745 - EX31_RS04725 0.86 -0.4 61,745 - EX31_RS04725 0.86 +0.5 61,745 - EX31_RS04725 0.86 -0.2 61,745 - EX31_RS04725 0.86 -0.1 61,798 - -1.5 61,798 - -1.5 61,798 - -0.8 61,829 - +1.5 61,829 - -0.8 61,829 - +1.5 61,832 - -0.8 61,832 - +0.9 61,832 - +0.2 61,832 - -0.7 61,851 - +0.9 61,886 - +0.4 61,908 - +0.2 61,908 - +0.5 61,908 - -0.8 61,908 - -0.4 61,908 - +0.8 61,909 + -0.5 61,910 - -1.3 61,910 - -0.9 61,910 - -0.5 61,910 - +0.1 61,910 - +0.3 61,910 - +0.0 61,910 - +1.3 61,910 - +0.9 61,932 - -0.8 61,948 + +0.5 61,949 - +0.1 61,949 - +0.3 61,949 - +0.1 61,949 - +0.4 61,965 - -1.0 61,998 - +0.4 62,023 - +0.6 62,026 - +0.5 62,060 + +0.4 62,060 + -0.1 62,060 + +0.4 62,060 + +0.0 62,060 + +0.4 62,060 + +1.2 62,060 + +0.9 62,060 + -0.3 62,061 - +0.3 62,061 - +0.9 62,061 - +0.5 62,065 + -0.6 62,065 + +1.9 62,065 + +1.3 62,066 - +0.4 62,066 - +0.4 62,130 + +0.5 62,131 - +0.7 62,133 + +0.2 62,133 + -1.1 62,133 + -2.3 62,133 + +0.1 62,133 + +1.2 62,133 + +0.8 62,133 + +0.3 62,133 + +0.2 62,134 - +0.8 62,134 - +0.4 62,134 - +1.8 62,134 - -0.4 62,134 - +0.6 62,134 - -1.7 62,134 - +0.5 62,134 - -1.3 62,134 - -0.1 62,134 - +1.1 62,134 - +1.3 62,142 + -1.5 62,142 + -1.4 62,142 + -0.2 62,142 + -0.6 62,142 + -0.8 62,142 + +0.8 62,142 + -0.5 62,142 + +1.0 62,143 - -0.0 62,143 - -0.2 62,143 - +0.5 62,143 - +1.1 62,143 - +0.1 62,143 - -0.1 62,143 - +0.6 62,143 - +0.6 62,143 - +1.3 62,165 + +0.2 62,179 + -0.3 62,180 - +0.6 62,228 + -0.1 62,228 + +1.3 62,228 + +0.4 62,228 + +0.5 62,228 + -2.1 62,228 + +0.7 62,229 - +2.3 62,229 - +0.4 62,229 - +0.6 62,229 - +0.8 62,229 - +0.1 62,229 - -0.1 62,229 - +1.5
Or see this region's nucleotide sequence