Strain Fitness in Rahnella sp. WP5 around EX31_RS04720

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04715 and EX31_RS04720 are separated by 127 nucleotidesEX31_RS04720 and EX31_RS04725 are separated by 57 nucleotidesEX31_RS04725 and EX31_RS04730 are separated by 348 nucleotides EX31_RS04715: EX31_RS04715 - SPOR domain-containing protein, at 58,971 to 60,026 _RS04715 EX31_RS04720: EX31_RS04720 - 3-dehydroquinate synthase, at 60,154 to 61,236 _RS04720 EX31_RS04725: EX31_RS04725 - shikimate kinase AroK, at 61,294 to 61,815 _RS04725 EX31_RS04730: EX31_RS04730 - DNA uptake porin HofQ, at 62,164 to 63,426 _RS04730 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2 3at 59.183 kb on + strand, within EX31_RS04715at 59.225 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.240 kb on + strand, within EX31_RS04715at 59.241 kb on - strand, within EX31_RS04715at 59.241 kb on - strand, within EX31_RS04715at 59.241 kb on - strand, within EX31_RS04715at 59.241 kb on - strand, within EX31_RS04715at 59.241 kb on - strand, within EX31_RS04715at 59.354 kb on + strand, within EX31_RS04715at 59.354 kb on + strand, within EX31_RS04715at 59.354 kb on + strand, within EX31_RS04715at 59.354 kb on + strand, within EX31_RS04715at 59.354 kb on + strand, within EX31_RS04715at 59.354 kb on + strand, within EX31_RS04715at 59.355 kb on - strand, within EX31_RS04715at 59.355 kb on - strand, within EX31_RS04715at 59.355 kb on - strand, within EX31_RS04715at 59.355 kb on - strand, within EX31_RS04715at 59.355 kb on - strand, within EX31_RS04715at 59.375 kb on + strand, within EX31_RS04715at 59.375 kb on + strand, within EX31_RS04715at 59.375 kb on + strand, within EX31_RS04715at 59.375 kb on + strand, within EX31_RS04715at 59.376 kb on - strand, within EX31_RS04715at 59.376 kb on - strand, within EX31_RS04715at 59.376 kb on - strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.415 kb on + strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.416 kb on - strand, within EX31_RS04715at 59.456 kb on + strand, within EX31_RS04715at 59.456 kb on + strand, within EX31_RS04715at 59.457 kb on - strand, within EX31_RS04715at 59.457 kb on - strand, within EX31_RS04715at 59.582 kb on + strand, within EX31_RS04715at 59.583 kb on - strand, within EX31_RS04715at 59.583 kb on - strand, within EX31_RS04715at 59.621 kb on + strand, within EX31_RS04715at 59.730 kb on - strand, within EX31_RS04715at 59.730 kb on - strand, within EX31_RS04715at 59.733 kb on - strand, within EX31_RS04715at 59.733 kb on - strand, within EX31_RS04715at 59.783 kb on + strand, within EX31_RS04715at 59.784 kb on - strand, within EX31_RS04715at 59.784 kb on - strand, within EX31_RS04715at 59.880 kb on + strand, within EX31_RS04715at 59.914 kb on + strand, within EX31_RS04715at 59.914 kb on + strand, within EX31_RS04715at 59.914 kb on + strand, within EX31_RS04715at 59.914 kb on + strand, within EX31_RS04715at 59.914 kb on + strand, within EX31_RS04715at 59.915 kb on - strand, within EX31_RS04715at 59.915 kb on - strand, within EX31_RS04715at 59.915 kb on - strand, within EX31_RS04715at 59.915 kb on - strand, within EX31_RS04715at 59.915 kb on - strand, within EX31_RS04715at 59.925 kb on + strandat 60.015 kb on + strandat 60.016 kb on - strandat 60.028 kb on + strandat 60.028 kb on + strandat 60.028 kb on + strandat 60.028 kb on + strandat 60.028 kb on + strandat 60.029 kb on - strandat 60.029 kb on - strandat 60.077 kb on + strandat 60.077 kb on + strandat 60.078 kb on - strandat 60.078 kb on - strandat 60.093 kb on - strandat 60.094 kb on + strandat 60.095 kb on - strandat 60.114 kb on + strandat 60.114 kb on + strandat 60.141 kb on + strandat 60.142 kb on - strandat 60.142 kb on - strandat 61.259 kb on - strandat 61.292 kb on - strandat 61.292 kb on - strandat 61.292 kb on - strandat 61.300 kb on - strandat 61.300 kb on - strandat 61.312 kb on - strandat 61.312 kb on - strandat 61.312 kb on - strandat 61.312 kb on - strandat 61.312 kb on - strandat 61.363 kb on - strand, within EX31_RS04725at 61.386 kb on - strand, within EX31_RS04725at 61.386 kb on - strand, within EX31_RS04725at 61.448 kb on - strand, within EX31_RS04725at 61.448 kb on - strand, within EX31_RS04725at 61.448 kb on - strand, within EX31_RS04725at 61.448 kb on - strand, within EX31_RS04725at 61.448 kb on - strand, within EX31_RS04725at 61.451 kb on - strand, within EX31_RS04725at 61.501 kb on - strand, within EX31_RS04725at 61.501 kb on - strand, within EX31_RS04725at 61.667 kb on - strand, within EX31_RS04725at 61.667 kb on - strand, within EX31_RS04725at 61.745 kb on - strand, within EX31_RS04725at 61.745 kb on - strand, within EX31_RS04725at 61.745 kb on - strand, within EX31_RS04725at 61.745 kb on - strand, within EX31_RS04725at 61.798 kb on - strandat 61.798 kb on - strandat 61.798 kb on - strandat 61.829 kb on - strandat 61.829 kb on - strandat 61.829 kb on - strandat 61.832 kb on - strandat 61.832 kb on - strandat 61.832 kb on - strandat 61.832 kb on - strandat 61.851 kb on - strandat 61.886 kb on - strandat 61.908 kb on - strandat 61.908 kb on - strandat 61.908 kb on - strandat 61.908 kb on - strandat 61.908 kb on - strandat 61.909 kb on + strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.910 kb on - strandat 61.932 kb on - strandat 61.948 kb on + strandat 61.949 kb on - strandat 61.949 kb on - strandat 61.949 kb on - strandat 61.949 kb on - strandat 61.965 kb on - strandat 61.998 kb on - strandat 62.023 kb on - strandat 62.026 kb on - strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.060 kb on + strandat 62.061 kb on - strandat 62.061 kb on - strandat 62.061 kb on - strandat 62.065 kb on + strandat 62.065 kb on + strandat 62.065 kb on + strandat 62.066 kb on - strandat 62.066 kb on - strandat 62.130 kb on + strandat 62.131 kb on - strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.133 kb on + strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.134 kb on - strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.142 kb on + strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.143 kb on - strandat 62.165 kb on + strandat 62.179 kb on + strandat 62.180 kb on - strandat 62.228 kb on + strandat 62.228 kb on + strandat 62.228 kb on + strandat 62.228 kb on + strandat 62.228 kb on + strandat 62.228 kb on + strandat 62.229 kb on - strandat 62.229 kb on - strandat 62.229 kb on - strandat 62.229 kb on - strandat 62.229 kb on - strandat 62.229 kb on - strandat 62.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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59,183 + EX31_RS04715 0.20 -1.5
59,225 + EX31_RS04715 0.24 +0.8
59,240 + EX31_RS04715 0.25 -1.2
59,240 + EX31_RS04715 0.25 -2.6
59,240 + EX31_RS04715 0.25 +0.9
59,240 + EX31_RS04715 0.25 -1.5
59,240 + EX31_RS04715 0.25 -0.2
59,240 + EX31_RS04715 0.25 -0.8
59,240 + EX31_RS04715 0.25 +0.0
59,240 + EX31_RS04715 0.25 -0.1
59,241 - EX31_RS04715 0.26 +1.3
59,241 - EX31_RS04715 0.26 -0.9
59,241 - EX31_RS04715 0.26 +1.5
59,241 - EX31_RS04715 0.26 +0.3
59,241 - EX31_RS04715 0.26 +0.3
59,354 + EX31_RS04715 0.36 -1.3
59,354 + EX31_RS04715 0.36 -1.3
59,354 + EX31_RS04715 0.36 -1.6
59,354 + EX31_RS04715 0.36 +0.3
59,354 + EX31_RS04715 0.36 -0.2
59,354 + EX31_RS04715 0.36 -0.8
59,355 - EX31_RS04715 0.36 -0.8
59,355 - EX31_RS04715 0.36 -0.1
59,355 - EX31_RS04715 0.36 +1.1
59,355 - EX31_RS04715 0.36 +1.7
59,355 - EX31_RS04715 0.36 +0.4
59,375 + EX31_RS04715 0.38 -1.3
59,375 + EX31_RS04715 0.38 -0.1
59,375 + EX31_RS04715 0.38 +0.5
59,375 + EX31_RS04715 0.38 -1.1
59,376 - EX31_RS04715 0.38 -0.1
59,376 - EX31_RS04715 0.38 -0.7
59,376 - EX31_RS04715 0.38 +0.0
59,415 + EX31_RS04715 0.42 +0.7
59,415 + EX31_RS04715 0.42 -0.3
59,415 + EX31_RS04715 0.42 +0.3
59,415 + EX31_RS04715 0.42 -2.0
59,415 + EX31_RS04715 0.42 -0.5
59,415 + EX31_RS04715 0.42 -0.1
59,415 + EX31_RS04715 0.42 +0.3
59,415 + EX31_RS04715 0.42 +0.5
59,415 + EX31_RS04715 0.42 +0.2
59,415 + EX31_RS04715 0.42 -1.1
59,416 - EX31_RS04715 0.42 +0.1
59,416 - EX31_RS04715 0.42 -0.6
59,416 - EX31_RS04715 0.42 +0.9
59,416 - EX31_RS04715 0.42 -0.7
59,416 - EX31_RS04715 0.42 -0.3
59,416 - EX31_RS04715 0.42 +0.7
59,416 - EX31_RS04715 0.42 +1.5
59,416 - EX31_RS04715 0.42 +0.7
59,416 - EX31_RS04715 0.42 -2.2
59,416 - EX31_RS04715 0.42 +0.7
59,416 - EX31_RS04715 0.42 -0.2
59,416 - EX31_RS04715 0.42 +0.8
59,416 - EX31_RS04715 0.42 -0.3
59,416 - EX31_RS04715 0.42 +0.5
59,456 + EX31_RS04715 0.46 +0.3
59,456 + EX31_RS04715 0.46 -0.8
59,457 - EX31_RS04715 0.46 -0.5
59,457 - EX31_RS04715 0.46 -0.5
59,582 + EX31_RS04715 0.58 -1.5
59,583 - EX31_RS04715 0.58 -0.1
59,583 - EX31_RS04715 0.58 -0.3
59,621 + EX31_RS04715 0.62 -0.7
59,730 - EX31_RS04715 0.72 +0.0
59,730 - EX31_RS04715 0.72 +0.2
59,733 - EX31_RS04715 0.72 -0.5
59,733 - EX31_RS04715 0.72 -0.1
59,783 + EX31_RS04715 0.77 -0.2
59,784 - EX31_RS04715 0.77 -1.3
59,784 - EX31_RS04715 0.77 -1.4
59,880 + EX31_RS04715 0.86 +0.9
59,914 + EX31_RS04715 0.89 -0.1
59,914 + EX31_RS04715 0.89 -2.7
59,914 + EX31_RS04715 0.89 -2.5
59,914 + EX31_RS04715 0.89 -0.3
59,914 + EX31_RS04715 0.89 -0.2
59,915 - EX31_RS04715 0.89 +0.5
59,915 - EX31_RS04715 0.89 +0.1
59,915 - EX31_RS04715 0.89 -2.2
59,915 - EX31_RS04715 0.89 +0.2
59,915 - EX31_RS04715 0.89 -0.1
59,925 + -1.8
60,015 + -0.1
60,016 - -1.3
60,028 + +1.0
60,028 + -0.2
60,028 + +0.2
60,028 + +0.8
60,028 + -0.4
60,029 - -1.3
60,029 - +0.5
60,077 + -1.3
60,077 + -1.9
60,078 - +1.5
60,078 - +0.8
60,093 - +0.3
60,094 + +0.0
60,095 - +1.0
60,114 + -0.4
60,114 + -1.3
60,141 + -1.4
60,142 - +0.1
60,142 - -0.2
61,259 - +1.4
61,292 - +3.1
61,292 - +0.8
61,292 - -0.7
61,300 - +0.8
61,300 - +0.3
61,312 - -0.0
61,312 - -0.8
61,312 - -1.0
61,312 - -0.5
61,312 - -1.3
61,363 - EX31_RS04725 0.13 -0.1
61,386 - EX31_RS04725 0.18 -0.5
61,386 - EX31_RS04725 0.18 -0.1
61,448 - EX31_RS04725 0.30 +0.9
61,448 - EX31_RS04725 0.30 -0.1
61,448 - EX31_RS04725 0.30 +0.7
61,448 - EX31_RS04725 0.30 -0.8
61,448 - EX31_RS04725 0.30 +0.2
61,451 - EX31_RS04725 0.30 +0.5
61,501 - EX31_RS04725 0.40 -0.8
61,501 - EX31_RS04725 0.40 +0.9
61,667 - EX31_RS04725 0.71 +1.5
61,667 - EX31_RS04725 0.71 +0.2
61,745 - EX31_RS04725 0.86 -0.4
61,745 - EX31_RS04725 0.86 +0.5
61,745 - EX31_RS04725 0.86 -0.2
61,745 - EX31_RS04725 0.86 -0.1
61,798 - -1.5
61,798 - -1.5
61,798 - -0.8
61,829 - +1.5
61,829 - -0.8
61,829 - +1.5
61,832 - -0.8
61,832 - +0.9
61,832 - +0.2
61,832 - -0.7
61,851 - +0.9
61,886 - +0.4
61,908 - +0.2
61,908 - +0.5
61,908 - -0.8
61,908 - -0.4
61,908 - +0.8
61,909 + -0.5
61,910 - -1.3
61,910 - -0.9
61,910 - -0.5
61,910 - +0.1
61,910 - +0.3
61,910 - +0.0
61,910 - +1.3
61,910 - +0.9
61,932 - -0.8
61,948 + +0.5
61,949 - +0.1
61,949 - +0.3
61,949 - +0.1
61,949 - +0.4
61,965 - -1.0
61,998 - +0.4
62,023 - +0.6
62,026 - +0.5
62,060 + +0.4
62,060 + -0.1
62,060 + +0.4
62,060 + +0.0
62,060 + +0.4
62,060 + +1.2
62,060 + +0.9
62,060 + -0.3
62,061 - +0.3
62,061 - +0.9
62,061 - +0.5
62,065 + -0.6
62,065 + +1.9
62,065 + +1.3
62,066 - +0.4
62,066 - +0.4
62,130 + +0.5
62,131 - +0.7
62,133 + +0.2
62,133 + -1.1
62,133 + -2.3
62,133 + +0.1
62,133 + +1.2
62,133 + +0.8
62,133 + +0.3
62,133 + +0.2
62,134 - +0.8
62,134 - +0.4
62,134 - +1.8
62,134 - -0.4
62,134 - +0.6
62,134 - -1.7
62,134 - +0.5
62,134 - -1.3
62,134 - -0.1
62,134 - +1.1
62,134 - +1.3
62,142 + -1.5
62,142 + -1.4
62,142 + -0.2
62,142 + -0.6
62,142 + -0.8
62,142 + +0.8
62,142 + -0.5
62,142 + +1.0
62,143 - -0.0
62,143 - -0.2
62,143 - +0.5
62,143 - +1.1
62,143 - +0.1
62,143 - -0.1
62,143 - +0.6
62,143 - +0.6
62,143 - +1.3
62,165 + +0.2
62,179 + -0.3
62,180 - +0.6
62,228 + -0.1
62,228 + +1.3
62,228 + +0.4
62,228 + +0.5
62,228 + -2.1
62,228 + +0.7
62,229 - +2.3
62,229 - +0.4
62,229 - +0.6
62,229 - +0.8
62,229 - +0.1
62,229 - -0.1
62,229 - +1.5

Or see this region's nucleotide sequence