Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04045 and EX31_RS04050 are separated by 173 nucleotides EX31_RS04050 and EX31_RS04055 are separated by 83 nucleotides
EX31_RS04045: EX31_RS04045 - type II toxin-antitoxin system HipA family toxin YjjJ, at 331,158 to 332,504
_RS04045
EX31_RS04050: EX31_RS04050 - purine-nucleoside phosphorylase, at 332,678 to 333,397
_RS04050
EX31_RS04055: EX31_RS04055 - phosphopentomutase, at 333,481 to 334,704
_RS04055
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 331.780 kb on - strand, within EX31_RS04045 at 331.780 kb on - strand, within EX31_RS04045 at 331.780 kb on - strand, within EX31_RS04045 at 331.833 kb on + strand, within EX31_RS04045 at 331.834 kb on - strand, within EX31_RS04045 at 331.870 kb on + strand, within EX31_RS04045 at 331.870 kb on + strand, within EX31_RS04045 at 331.870 kb on + strand, within EX31_RS04045 at 331.870 kb on + strand, within EX31_RS04045 at 331.870 kb on + strand, within EX31_RS04045 at 331.871 kb on - strand, within EX31_RS04045 at 331.871 kb on - strand, within EX31_RS04045 at 331.871 kb on - strand, within EX31_RS04045 at 331.883 kb on + strand, within EX31_RS04045 at 331.951 kb on + strand, within EX31_RS04045 at 331.951 kb on + strand, within EX31_RS04045 at 331.951 kb on + strand, within EX31_RS04045 at 331.951 kb on + strand, within EX31_RS04045 at 331.952 kb on - strand, within EX31_RS04045 at 331.952 kb on - strand, within EX31_RS04045 at 331.986 kb on - strand, within EX31_RS04045 at 332.015 kb on - strand, within EX31_RS04045 at 332.015 kb on - strand, within EX31_RS04045 at 332.102 kb on + strand, within EX31_RS04045 at 332.102 kb on + strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.103 kb on - strand, within EX31_RS04045 at 332.133 kb on - strand, within EX31_RS04045 at 332.135 kb on + strand, within EX31_RS04045 at 332.136 kb on - strand, within EX31_RS04045 at 332.136 kb on - strand, within EX31_RS04045 at 332.186 kb on + strand, within EX31_RS04045 at 332.187 kb on - strand, within EX31_RS04045 at 332.207 kb on - strand, within EX31_RS04045 at 332.266 kb on + strand, within EX31_RS04045 at 332.266 kb on + strand, within EX31_RS04045 at 332.266 kb on + strand, within EX31_RS04045 at 332.266 kb on + strand, within EX31_RS04045 at 332.267 kb on - strand, within EX31_RS04045 at 332.267 kb on - strand, within EX31_RS04045 at 332.268 kb on + strand, within EX31_RS04045 at 332.268 kb on + strand, within EX31_RS04045 at 332.268 kb on + strand, within EX31_RS04045 at 332.269 kb on - strand, within EX31_RS04045 at 332.269 kb on - strand, within EX31_RS04045 at 332.303 kb on + strand, within EX31_RS04045 at 332.303 kb on + strand, within EX31_RS04045 at 332.354 kb on + strand, within EX31_RS04045 at 332.354 kb on + strand, within EX31_RS04045 at 332.354 kb on + strand, within EX31_RS04045 at 332.354 kb on + strand, within EX31_RS04045 at 332.354 kb on + strand, within EX31_RS04045 at 332.354 kb on + strand, within EX31_RS04045 at 332.355 kb on - strand, within EX31_RS04045 at 332.355 kb on - strand, within EX31_RS04045 at 332.356 kb on + strand, within EX31_RS04045 at 332.357 kb on - strand, within EX31_RS04045 at 332.357 kb on - strand, within EX31_RS04045 at 332.484 kb on + strand at 332.485 kb on - strand at 332.485 kb on - strand at 332.540 kb on - strand at 332.548 kb on - strand at 332.574 kb on + strand at 332.579 kb on + strand at 332.667 kb on - strand at 332.794 kb on + strand, within EX31_RS04050 at 332.839 kb on - strand, within EX31_RS04050 at 332.916 kb on + strand, within EX31_RS04050 at 332.917 kb on - strand, within EX31_RS04050 at 332.939 kb on - strand, within EX31_RS04050 at 332.945 kb on + strand, within EX31_RS04050 at 333.004 kb on - strand, within EX31_RS04050 at 333.004 kb on - strand, within EX31_RS04050 at 333.240 kb on + strand, within EX31_RS04050 at 333.240 kb on + strand, within EX31_RS04050 at 333.240 kb on + strand, within EX31_RS04050 at 333.240 kb on + strand, within EX31_RS04050 at 333.241 kb on - strand, within EX31_RS04050 at 333.241 kb on - strand, within EX31_RS04050 at 333.286 kb on + strand, within EX31_RS04050 at 333.286 kb on + strand, within EX31_RS04050 at 333.320 kb on - strand, within EX31_RS04050 at 333.379 kb on + strand at 333.380 kb on - strand at 333.380 kb on - strand at 333.380 kb on - strand at 333.403 kb on + strand at 333.403 kb on + strand at 333.404 kb on - strand at 333.404 kb on - strand at 333.404 kb on - strand at 333.404 kb on - strand at 333.427 kb on + strand at 333.427 kb on + strand at 333.427 kb on + strand at 333.427 kb on + strand at 333.427 kb on + strand at 333.427 kb on + strand at 333.428 kb on - strand at 333.428 kb on - strand at 333.428 kb on - strand at 333.435 kb on - strand at 333.436 kb on + strand at 333.437 kb on - strand at 333.437 kb on - strand at 333.437 kb on - strand at 333.452 kb on + strand at 333.452 kb on + strand at 333.452 kb on + strand at 333.453 kb on - strand at 333.453 kb on - strand at 333.455 kb on - strand at 333.455 kb on - strand at 333.455 kb on - strand at 333.455 kb on - strand at 333.480 kb on - strand at 333.524 kb on + strand at 333.524 kb on + strand at 333.525 kb on - strand at 333.525 kb on - strand at 333.525 kb on - strand at 333.529 kb on - strand at 333.529 kb on - strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.587 kb on - strand at 333.604 kb on + strand, within EX31_RS04055 at 333.605 kb on - strand, within EX31_RS04055 at 333.605 kb on - strand, within EX31_RS04055 at 333.627 kb on + strand, within EX31_RS04055 at 333.721 kb on - strand, within EX31_RS04055 at 333.752 kb on + strand, within EX31_RS04055 at 333.753 kb on - strand, within EX31_RS04055 at 333.761 kb on - strand, within EX31_RS04055 at 333.761 kb on - strand, within EX31_RS04055 at 333.779 kb on + strand, within EX31_RS04055 at 333.879 kb on + strand, within EX31_RS04055 at 333.880 kb on - strand, within EX31_RS04055 at 333.900 kb on + strand, within EX31_RS04055 at 333.901 kb on - strand, within EX31_RS04055 at 333.914 kb on + strand, within EX31_RS04055 at 333.914 kb on + strand, within EX31_RS04055 at 333.915 kb on - strand, within EX31_RS04055 at 333.915 kb on - strand, within EX31_RS04055 at 333.915 kb on - strand, within EX31_RS04055 at 334.026 kb on + strand, within EX31_RS04055 at 334.084 kb on - strand, within EX31_RS04055 at 334.084 kb on - strand, within EX31_RS04055 at 334.088 kb on + strand, within EX31_RS04055 at 334.088 kb on + strand, within EX31_RS04055 at 334.089 kb on - strand, within EX31_RS04055 at 334.134 kb on - strand, within EX31_RS04055 at 334.134 kb on - strand, within EX31_RS04055 at 334.134 kb on - strand, within EX31_RS04055 at 334.199 kb on + strand, within EX31_RS04055 at 334.314 kb on + strand, within EX31_RS04055 at 334.358 kb on + strand, within EX31_RS04055 at 334.359 kb on - strand, within EX31_RS04055 at 334.359 kb on - strand, within EX31_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 331,780 - EX31_RS04045 0.46 -0.2 331,780 - EX31_RS04045 0.46 -0.2 331,780 - EX31_RS04045 0.46 -0.2 331,833 + EX31_RS04045 0.50 +0.3 331,834 - EX31_RS04045 0.50 +0.9 331,870 + EX31_RS04045 0.53 +0.8 331,870 + EX31_RS04045 0.53 -1.3 331,870 + EX31_RS04045 0.53 +1.5 331,870 + EX31_RS04045 0.53 -0.1 331,870 + EX31_RS04045 0.53 +0.6 331,871 - EX31_RS04045 0.53 -0.5 331,871 - EX31_RS04045 0.53 -0.9 331,871 - EX31_RS04045 0.53 -0.1 331,883 + EX31_RS04045 0.54 +1.2 331,951 + EX31_RS04045 0.59 +1.3 331,951 + EX31_RS04045 0.59 +0.8 331,951 + EX31_RS04045 0.59 +0.1 331,951 + EX31_RS04045 0.59 +0.7 331,952 - EX31_RS04045 0.59 +0.5 331,952 - EX31_RS04045 0.59 +1.3 331,986 - EX31_RS04045 0.61 +0.2 332,015 - EX31_RS04045 0.64 +1.0 332,015 - EX31_RS04045 0.64 +1.4 332,102 + EX31_RS04045 0.70 -0.0 332,102 + EX31_RS04045 0.70 +3.8 332,103 - EX31_RS04045 0.70 +0.3 332,103 - EX31_RS04045 0.70 +0.1 332,103 - EX31_RS04045 0.70 +0.2 332,103 - EX31_RS04045 0.70 +0.2 332,103 - EX31_RS04045 0.70 -1.6 332,103 - EX31_RS04045 0.70 -0.1 332,103 - EX31_RS04045 0.70 +0.3 332,103 - EX31_RS04045 0.70 +0.2 332,103 - EX31_RS04045 0.70 -0.1 332,133 - EX31_RS04045 0.72 -1.4 332,135 + EX31_RS04045 0.73 +0.1 332,136 - EX31_RS04045 0.73 +0.4 332,136 - EX31_RS04045 0.73 +3.3 332,186 + EX31_RS04045 0.76 -0.4 332,187 - EX31_RS04045 0.76 +0.5 332,207 - EX31_RS04045 0.78 -0.7 332,266 + EX31_RS04045 0.82 -0.4 332,266 + EX31_RS04045 0.82 -1.1 332,266 + EX31_RS04045 0.82 +0.6 332,266 + EX31_RS04045 0.82 -0.8 332,267 - EX31_RS04045 0.82 -0.8 332,267 - EX31_RS04045 0.82 +1.0 332,268 + EX31_RS04045 0.82 -1.0 332,268 + EX31_RS04045 0.82 +1.2 332,268 + EX31_RS04045 0.82 +1.6 332,269 - EX31_RS04045 0.82 -0.5 332,269 - EX31_RS04045 0.82 +0.4 332,303 + EX31_RS04045 0.85 -0.3 332,303 + EX31_RS04045 0.85 +0.3 332,354 + EX31_RS04045 0.89 -0.2 332,354 + EX31_RS04045 0.89 -0.3 332,354 + EX31_RS04045 0.89 +2.0 332,354 + EX31_RS04045 0.89 +1.0 332,354 + EX31_RS04045 0.89 -0.2 332,354 + EX31_RS04045 0.89 +1.0 332,355 - EX31_RS04045 0.89 -0.1 332,355 - EX31_RS04045 0.89 +0.5 332,356 + EX31_RS04045 0.89 +1.2 332,357 - EX31_RS04045 0.89 -0.4 332,357 - EX31_RS04045 0.89 -0.3 332,484 + +2.2 332,485 - +0.2 332,485 - +0.0 332,540 - +0.4 332,548 - +0.9 332,574 + -1.3 332,579 + -0.5 332,667 - +0.0 332,794 + EX31_RS04050 0.16 -0.9 332,839 - EX31_RS04050 0.22 +0.3 332,916 + EX31_RS04050 0.33 +0.7 332,917 - EX31_RS04050 0.33 +0.8 332,939 - EX31_RS04050 0.36 -0.1 332,945 + EX31_RS04050 0.37 +3.2 333,004 - EX31_RS04050 0.45 +0.0 333,004 - EX31_RS04050 0.45 -2.0 333,240 + EX31_RS04050 0.78 -1.0 333,240 + EX31_RS04050 0.78 +1.2 333,240 + EX31_RS04050 0.78 +0.6 333,240 + EX31_RS04050 0.78 -0.2 333,241 - EX31_RS04050 0.78 +0.6 333,241 - EX31_RS04050 0.78 -0.6 333,286 + EX31_RS04050 0.84 +0.1 333,286 + EX31_RS04050 0.84 -1.3 333,320 - EX31_RS04050 0.89 -0.5 333,379 + -1.1 333,380 - +1.5 333,380 - +1.6 333,380 - +0.3 333,403 + +0.0 333,403 + +0.2 333,404 - -0.1 333,404 - -1.1 333,404 - +0.3 333,404 - -0.2 333,427 + +0.2 333,427 + -0.1 333,427 + +0.0 333,427 + +0.9 333,427 + -1.0 333,427 + +1.1 333,428 - +0.5 333,428 - +0.2 333,428 - -1.2 333,435 - +0.2 333,436 + +0.4 333,437 - +1.2 333,437 - +0.4 333,437 - -0.1 333,452 + -0.3 333,452 + +0.4 333,452 + +0.7 333,453 - -0.1 333,453 - -1.0 333,455 - -0.2 333,455 - -0.1 333,455 - -1.9 333,455 - +0.6 333,480 - +0.4 333,524 + +0.7 333,524 + +0.5 333,525 - -0.6 333,525 - -0.8 333,525 - +0.6 333,529 - -1.4 333,529 - -0.1 333,571 + +1.5 333,571 + -1.4 333,571 + +1.2 333,572 - +0.7 333,572 - -0.0 333,572 - +1.2 333,572 - +0.1 333,572 - +1.0 333,587 - +0.1 333,604 + EX31_RS04055 0.10 +1.2 333,605 - EX31_RS04055 0.10 -0.1 333,605 - EX31_RS04055 0.10 -0.0 333,627 + EX31_RS04055 0.12 -0.7 333,721 - EX31_RS04055 0.20 +1.2 333,752 + EX31_RS04055 0.22 -1.1 333,753 - EX31_RS04055 0.22 -0.2 333,761 - EX31_RS04055 0.23 +0.4 333,761 - EX31_RS04055 0.23 +1.3 333,779 + EX31_RS04055 0.24 +1.2 333,879 + EX31_RS04055 0.33 -0.1 333,880 - EX31_RS04055 0.33 -0.0 333,900 + EX31_RS04055 0.34 -0.1 333,901 - EX31_RS04055 0.34 -0.3 333,914 + EX31_RS04055 0.35 +2.2 333,914 + EX31_RS04055 0.35 +0.2 333,915 - EX31_RS04055 0.35 -1.2 333,915 - EX31_RS04055 0.35 +1.2 333,915 - EX31_RS04055 0.35 -0.6 334,026 + EX31_RS04055 0.45 -1.4 334,084 - EX31_RS04055 0.49 +0.0 334,084 - EX31_RS04055 0.49 +0.3 334,088 + EX31_RS04055 0.50 -0.1 334,088 + EX31_RS04055 0.50 +1.2 334,089 - EX31_RS04055 0.50 +1.4 334,134 - EX31_RS04055 0.53 +0.3 334,134 - EX31_RS04055 0.53 -0.2 334,134 - EX31_RS04055 0.53 -0.1 334,199 + EX31_RS04055 0.59 -0.2 334,314 + EX31_RS04055 0.68 +0.9 334,358 + EX31_RS04055 0.72 -0.7 334,359 - EX31_RS04055 0.72 -0.4 334,359 - EX31_RS04055 0.72 +1.5
Or see this region's nucleotide sequence