Strain Fitness in Rahnella sp. WP5 around EX31_RS03850

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03845 and EX31_RS03850 are separated by 160 nucleotidesEX31_RS03850 and EX31_RS03855 are separated by 65 nucleotides EX31_RS03845: EX31_RS03845 - porin, at 281,946 to 283,091 _RS03845 EX31_RS03850: EX31_RS03850 - SMP-30/gluconolactonase/LRE family protein, at 283,252 to 284,127 _RS03850 EX31_RS03855: EX31_RS03855 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 284,193 to 285,146 _RS03855 EX31_RS03860: EX31_RS03860 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 285,127 to 285,597 _RS03860 Position (kb) 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 282.293 kb on + strand, within EX31_RS03845at 282.315 kb on + strand, within EX31_RS03845at 282.315 kb on + strand, within EX31_RS03845at 282.315 kb on + strand, within EX31_RS03845at 282.315 kb on + strand, within EX31_RS03845at 282.316 kb on - strand, within EX31_RS03845at 282.316 kb on - strand, within EX31_RS03845at 282.316 kb on - strand, within EX31_RS03845at 282.316 kb on - strand, within EX31_RS03845at 282.339 kb on + strand, within EX31_RS03845at 282.375 kb on + strand, within EX31_RS03845at 282.375 kb on + strand, within EX31_RS03845at 282.375 kb on + strand, within EX31_RS03845at 282.375 kb on + strand, within EX31_RS03845at 282.376 kb on - strand, within EX31_RS03845at 282.378 kb on + strand, within EX31_RS03845at 282.379 kb on - strand, within EX31_RS03845at 282.379 kb on - strand, within EX31_RS03845at 282.415 kb on - strand, within EX31_RS03845at 282.415 kb on - strand, within EX31_RS03845at 282.415 kb on - strand, within EX31_RS03845at 282.419 kb on + strand, within EX31_RS03845at 282.419 kb on + strand, within EX31_RS03845at 282.420 kb on - strand, within EX31_RS03845at 282.460 kb on - strand, within EX31_RS03845at 282.482 kb on + strand, within EX31_RS03845at 282.525 kb on + strand, within EX31_RS03845at 282.525 kb on + strand, within EX31_RS03845at 282.525 kb on + strand, within EX31_RS03845at 282.525 kb on + strand, within EX31_RS03845at 282.525 kb on + strand, within EX31_RS03845at 282.525 kb on + strand, within EX31_RS03845at 282.526 kb on - strand, within EX31_RS03845at 282.534 kb on + strand, within EX31_RS03845at 282.534 kb on + strand, within EX31_RS03845at 282.583 kb on - strand, within EX31_RS03845at 282.583 kb on - strand, within EX31_RS03845at 282.583 kb on - strand, within EX31_RS03845at 282.590 kb on + strand, within EX31_RS03845at 282.618 kb on + strand, within EX31_RS03845at 282.619 kb on - strand, within EX31_RS03845at 282.619 kb on - strand, within EX31_RS03845at 282.655 kb on - strand, within EX31_RS03845at 282.660 kb on + strand, within EX31_RS03845at 282.660 kb on + strand, within EX31_RS03845at 282.660 kb on + strand, within EX31_RS03845at 282.660 kb on + strand, within EX31_RS03845at 282.661 kb on - strand, within EX31_RS03845at 282.661 kb on - strand, within EX31_RS03845at 282.661 kb on - strand, within EX31_RS03845at 282.661 kb on - strand, within EX31_RS03845at 282.702 kb on - strand, within EX31_RS03845at 282.708 kb on + strand, within EX31_RS03845at 282.708 kb on + strand, within EX31_RS03845at 282.708 kb on + strand, within EX31_RS03845at 282.708 kb on + strand, within EX31_RS03845at 282.709 kb on - strand, within EX31_RS03845at 282.709 kb on - strand, within EX31_RS03845at 282.783 kb on + strand, within EX31_RS03845at 282.783 kb on + strand, within EX31_RS03845at 282.844 kb on - strand, within EX31_RS03845at 282.844 kb on - strand, within EX31_RS03845at 282.844 kb on - strand, within EX31_RS03845at 282.855 kb on + strand, within EX31_RS03845at 282.855 kb on + strand, within EX31_RS03845at 282.855 kb on + strand, within EX31_RS03845at 282.856 kb on - strand, within EX31_RS03845at 282.856 kb on - strand, within EX31_RS03845at 282.856 kb on - strand, within EX31_RS03845at 282.867 kb on + strand, within EX31_RS03845at 282.867 kb on + strand, within EX31_RS03845at 282.912 kb on + strand, within EX31_RS03845at 282.913 kb on - strand, within EX31_RS03845at 282.913 kb on - strand, within EX31_RS03845at 282.913 kb on - strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.936 kb on + strand, within EX31_RS03845at 282.937 kb on - strand, within EX31_RS03845at 282.937 kb on - strand, within EX31_RS03845at 282.937 kb on - strand, within EX31_RS03845at 282.937 kb on - strand, within EX31_RS03845at 282.937 kb on - strand, within EX31_RS03845at 282.941 kb on - strand, within EX31_RS03845at 282.954 kb on + strand, within EX31_RS03845at 282.955 kb on - strand, within EX31_RS03845at 282.962 kb on + strand, within EX31_RS03845at 282.962 kb on + strand, within EX31_RS03845at 282.962 kb on + strand, within EX31_RS03845at 282.962 kb on + strand, within EX31_RS03845at 282.962 kb on + strand, within EX31_RS03845at 282.962 kb on + strand, within EX31_RS03845at 282.963 kb on - strand, within EX31_RS03845at 283.017 kb on + strandat 283.017 kb on + strandat 283.040 kb on + strandat 283.058 kb on + strandat 283.059 kb on - strandat 283.081 kb on - strandat 283.090 kb on - strandat 283.090 kb on - strandat 283.123 kb on + strandat 283.130 kb on + strandat 283.130 kb on + strandat 283.131 kb on - strandat 283.156 kb on - strandat 283.169 kb on + strandat 283.169 kb on + strandat 283.169 kb on + strandat 283.170 kb on - strandat 283.178 kb on + strandat 283.179 kb on - strandat 283.202 kb on - strandat 283.217 kb on + strandat 283.217 kb on + strandat 283.217 kb on + strandat 283.217 kb on + strandat 283.218 kb on - strandat 283.218 kb on - strandat 283.218 kb on - strandat 283.218 kb on - strandat 283.218 kb on - strandat 283.219 kb on + strandat 283.219 kb on + strandat 283.220 kb on - strandat 283.220 kb on - strandat 283.220 kb on - strandat 283.220 kb on - strandat 283.220 kb on - strandat 283.220 kb on - strandat 283.220 kb on - strandat 283.226 kb on + strandat 283.226 kb on + strandat 283.226 kb on + strandat 283.226 kb on + strandat 283.227 kb on - strandat 283.227 kb on - strandat 283.227 kb on - strandat 283.227 kb on - strandat 283.227 kb on - strandat 283.227 kb on - strandat 283.227 kb on - strandat 283.230 kb on + strandat 283.230 kb on + strandat 283.230 kb on + strandat 283.230 kb on + strandat 283.230 kb on + strandat 283.230 kb on + strandat 283.230 kb on + strandat 283.231 kb on - strandat 283.231 kb on - strandat 283.231 kb on - strandat 283.231 kb on - strandat 283.385 kb on - strand, within EX31_RS03850at 283.501 kb on + strand, within EX31_RS03850at 283.502 kb on - strand, within EX31_RS03850at 283.617 kb on + strand, within EX31_RS03850at 283.619 kb on + strand, within EX31_RS03850at 283.619 kb on + strand, within EX31_RS03850at 283.619 kb on + strand, within EX31_RS03850at 283.619 kb on + strand, within EX31_RS03850at 283.620 kb on - strand, within EX31_RS03850at 283.620 kb on - strand, within EX31_RS03850at 283.620 kb on - strand, within EX31_RS03850at 283.704 kb on + strand, within EX31_RS03850at 283.704 kb on + strand, within EX31_RS03850at 283.705 kb on - strand, within EX31_RS03850at 283.705 kb on - strand, within EX31_RS03850at 283.827 kb on + strand, within EX31_RS03850at 283.928 kb on + strand, within EX31_RS03850at 283.995 kb on + strand, within EX31_RS03850at 284.147 kb on + strandat 284.181 kb on + strandat 284.182 kb on - strandat 284.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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282,293 + EX31_RS03845 0.30 -1.0
282,315 + EX31_RS03845 0.32 +0.2
282,315 + EX31_RS03845 0.32 +0.2
282,315 + EX31_RS03845 0.32 -0.2
282,315 + EX31_RS03845 0.32 -0.1
282,316 - EX31_RS03845 0.32 +1.0
282,316 - EX31_RS03845 0.32 +1.5
282,316 - EX31_RS03845 0.32 -1.8
282,316 - EX31_RS03845 0.32 +0.6
282,339 + EX31_RS03845 0.34 +1.0
282,375 + EX31_RS03845 0.37 -0.8
282,375 + EX31_RS03845 0.37 -0.8
282,375 + EX31_RS03845 0.37 +0.4
282,375 + EX31_RS03845 0.37 -0.9
282,376 - EX31_RS03845 0.38 -1.4
282,378 + EX31_RS03845 0.38 -1.3
282,379 - EX31_RS03845 0.38 +0.5
282,379 - EX31_RS03845 0.38 -0.2
282,415 - EX31_RS03845 0.41 +0.4
282,415 - EX31_RS03845 0.41 +0.0
282,415 - EX31_RS03845 0.41 -1.1
282,419 + EX31_RS03845 0.41 -0.6
282,419 + EX31_RS03845 0.41 +0.4
282,420 - EX31_RS03845 0.41 +1.2
282,460 - EX31_RS03845 0.45 +0.3
282,482 + EX31_RS03845 0.47 +0.6
282,525 + EX31_RS03845 0.51 +0.7
282,525 + EX31_RS03845 0.51 +1.2
282,525 + EX31_RS03845 0.51 +0.5
282,525 + EX31_RS03845 0.51 +0.3
282,525 + EX31_RS03845 0.51 -1.0
282,525 + EX31_RS03845 0.51 -0.3
282,526 - EX31_RS03845 0.51 -0.7
282,534 + EX31_RS03845 0.51 -0.4
282,534 + EX31_RS03845 0.51 +0.6
282,583 - EX31_RS03845 0.56 +0.0
282,583 - EX31_RS03845 0.56 +0.5
282,583 - EX31_RS03845 0.56 +0.2
282,590 + EX31_RS03845 0.56 -0.3
282,618 + EX31_RS03845 0.59 +1.8
282,619 - EX31_RS03845 0.59 +0.9
282,619 - EX31_RS03845 0.59 +0.8
282,655 - EX31_RS03845 0.62 +0.0
282,660 + EX31_RS03845 0.62 +1.1
282,660 + EX31_RS03845 0.62 -0.4
282,660 + EX31_RS03845 0.62 -0.8
282,660 + EX31_RS03845 0.62 -0.2
282,661 - EX31_RS03845 0.62 -0.0
282,661 - EX31_RS03845 0.62 +1.2
282,661 - EX31_RS03845 0.62 +0.2
282,661 - EX31_RS03845 0.62 -0.0
282,702 - EX31_RS03845 0.66 +0.2
282,708 + EX31_RS03845 0.66 -1.1
282,708 + EX31_RS03845 0.66 -0.1
282,708 + EX31_RS03845 0.66 +1.4
282,708 + EX31_RS03845 0.66 +0.5
282,709 - EX31_RS03845 0.67 +0.4
282,709 - EX31_RS03845 0.67 -2.3
282,783 + EX31_RS03845 0.73 +1.0
282,783 + EX31_RS03845 0.73 +0.1
282,844 - EX31_RS03845 0.78 -0.4
282,844 - EX31_RS03845 0.78 +0.7
282,844 - EX31_RS03845 0.78 -0.7
282,855 + EX31_RS03845 0.79 +0.4
282,855 + EX31_RS03845 0.79 -1.4
282,855 + EX31_RS03845 0.79 +0.0
282,856 - EX31_RS03845 0.79 -2.4
282,856 - EX31_RS03845 0.79 +0.1
282,856 - EX31_RS03845 0.79 +0.9
282,867 + EX31_RS03845 0.80 +0.6
282,867 + EX31_RS03845 0.80 -1.2
282,912 + EX31_RS03845 0.84 -0.8
282,913 - EX31_RS03845 0.84 +0.0
282,913 - EX31_RS03845 0.84 +0.2
282,913 - EX31_RS03845 0.84 -1.1
282,936 + EX31_RS03845 0.86 -0.4
282,936 + EX31_RS03845 0.86 +0.9
282,936 + EX31_RS03845 0.86 +0.5
282,936 + EX31_RS03845 0.86 -0.4
282,936 + EX31_RS03845 0.86 -0.4
282,936 + EX31_RS03845 0.86 +1.1
282,936 + EX31_RS03845 0.86 -0.7
282,936 + EX31_RS03845 0.86 +0.4
282,937 - EX31_RS03845 0.86 +1.2
282,937 - EX31_RS03845 0.86 +0.2
282,937 - EX31_RS03845 0.86 +1.5
282,937 - EX31_RS03845 0.86 +1.2
282,937 - EX31_RS03845 0.86 -0.7
282,941 - EX31_RS03845 0.87 +1.2
282,954 + EX31_RS03845 0.88 -1.6
282,955 - EX31_RS03845 0.88 +0.4
282,962 + EX31_RS03845 0.89 +2.2
282,962 + EX31_RS03845 0.89 -1.5
282,962 + EX31_RS03845 0.89 +0.2
282,962 + EX31_RS03845 0.89 +0.4
282,962 + EX31_RS03845 0.89 +0.1
282,962 + EX31_RS03845 0.89 -0.4
282,963 - EX31_RS03845 0.89 +0.2
283,017 + +0.9
283,017 + +0.9
283,040 + -0.1
283,058 + -0.4
283,059 - -0.4
283,081 - -2.1
283,090 - +1.2
283,090 - +0.8
283,123 + +1.2
283,130 + -1.3
283,130 + +0.5
283,131 - -0.7
283,156 - -0.8
283,169 + -1.4
283,169 + +0.3
283,169 + +0.6
283,170 - +2.2
283,178 + -1.1
283,179 - +0.8
283,202 - +0.3
283,217 + -0.2
283,217 + +0.3
283,217 + +0.9
283,217 + +1.2
283,218 - +1.9
283,218 - +0.6
283,218 - -0.1
283,218 - -0.6
283,218 - +1.3
283,219 + -0.7
283,219 + +1.4
283,220 - +0.5
283,220 - -2.1
283,220 - -0.3
283,220 - +0.2
283,220 - +0.5
283,220 - -0.1
283,220 - +0.8
283,226 + +0.1
283,226 + +1.2
283,226 + -0.3
283,226 + +0.9
283,227 - +0.0
283,227 - +0.7
283,227 - +1.0
283,227 - +0.7
283,227 - +0.2
283,227 - +0.4
283,227 - -0.8
283,230 + +0.2
283,230 + -1.1
283,230 + +1.1
283,230 + +1.3
283,230 + -2.4
283,230 + +0.2
283,230 + -0.4
283,231 - +0.5
283,231 - +0.7
283,231 - +1.5
283,231 - +1.0
283,385 - EX31_RS03850 0.15 -0.4
283,501 + EX31_RS03850 0.28 -0.8
283,502 - EX31_RS03850 0.29 -0.5
283,617 + EX31_RS03850 0.42 +0.4
283,619 + EX31_RS03850 0.42 +0.6
283,619 + EX31_RS03850 0.42 +1.7
283,619 + EX31_RS03850 0.42 +1.3
283,619 + EX31_RS03850 0.42 -0.0
283,620 - EX31_RS03850 0.42 +1.4
283,620 - EX31_RS03850 0.42 -0.3
283,620 - EX31_RS03850 0.42 +1.2
283,704 + EX31_RS03850 0.52 +1.2
283,704 + EX31_RS03850 0.52 +1.3
283,705 - EX31_RS03850 0.52 +0.6
283,705 - EX31_RS03850 0.52 +1.2
283,827 + EX31_RS03850 0.66 +0.8
283,928 + EX31_RS03850 0.77 +0.8
283,995 + EX31_RS03850 0.85 +0.8
284,147 + +0.5
284,181 + +2.2
284,182 - -0.1
284,182 - +0.1

Or see this region's nucleotide sequence