Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03390 and EX31_RS03395 overlap by 11 nucleotides EX31_RS03395 and EX31_RS03400 are separated by 76 nucleotides EX31_RS03400 and EX31_RS03410 are separated by 706 nucleotides
EX31_RS03390: EX31_RS03390 - drug/metabolite DMT transporter permease, at 165,820 to 166,710
_RS03390
EX31_RS03395: EX31_RS03395 - YacL family protein, at 166,700 to 167,065
_RS03395
EX31_RS03400: EX31_RS03400 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 167,142 to 169,739
_RS03400
EX31_RS03410: EX31_RS03410 - type 1 fimbrial protein, at 170,446 to 171,306
_RS03410
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 166.163 kb on + strand, within EX31_RS03390 at 166.163 kb on + strand, within EX31_RS03390 at 166.163 kb on + strand, within EX31_RS03390 at 166.163 kb on + strand, within EX31_RS03390 at 166.163 kb on + strand, within EX31_RS03390 at 166.164 kb on - strand, within EX31_RS03390 at 166.164 kb on - strand, within EX31_RS03390 at 166.291 kb on + strand, within EX31_RS03390 at 166.330 kb on + strand, within EX31_RS03390 at 166.330 kb on + strand, within EX31_RS03390 at 166.330 kb on + strand, within EX31_RS03390 at 166.331 kb on - strand, within EX31_RS03390 at 166.331 kb on - strand, within EX31_RS03390 at 166.331 kb on - strand, within EX31_RS03390 at 166.331 kb on - strand, within EX31_RS03390 at 166.350 kb on - strand, within EX31_RS03390 at 166.356 kb on + strand, within EX31_RS03390 at 166.357 kb on - strand, within EX31_RS03390 at 166.417 kb on + strand, within EX31_RS03390 at 166.418 kb on - strand, within EX31_RS03390 at 166.418 kb on - strand, within EX31_RS03390 at 166.426 kb on + strand, within EX31_RS03390 at 166.426 kb on + strand, within EX31_RS03390 at 166.426 kb on + strand, within EX31_RS03390 at 166.426 kb on + strand, within EX31_RS03390 at 166.427 kb on - strand, within EX31_RS03390 at 166.427 kb on - strand, within EX31_RS03390 at 166.454 kb on + strand, within EX31_RS03390 at 166.454 kb on + strand, within EX31_RS03390 at 166.473 kb on - strand, within EX31_RS03390 at 166.504 kb on + strand, within EX31_RS03390 at 166.504 kb on + strand, within EX31_RS03390 at 166.505 kb on - strand, within EX31_RS03390 at 166.564 kb on + strand, within EX31_RS03390 at 166.565 kb on - strand, within EX31_RS03390 at 166.565 kb on - strand, within EX31_RS03390 at 166.611 kb on + strand, within EX31_RS03390 at 166.611 kb on + strand, within EX31_RS03390 at 166.611 kb on + strand, within EX31_RS03390 at 166.611 kb on + strand, within EX31_RS03390 at 166.611 kb on + strand, within EX31_RS03390 at 166.612 kb on - strand, within EX31_RS03390 at 166.612 kb on - strand, within EX31_RS03390 at 166.612 kb on - strand, within EX31_RS03390 at 166.612 kb on - strand, within EX31_RS03390 at 166.612 kb on - strand, within EX31_RS03390 at 166.728 kb on + strand at 166.728 kb on + strand at 166.728 kb on + strand at 166.789 kb on - strand, within EX31_RS03395 at 166.791 kb on + strand, within EX31_RS03395 at 166.792 kb on - strand, within EX31_RS03395 at 166.792 kb on - strand, within EX31_RS03395 at 166.792 kb on - strand, within EX31_RS03395 at 166.865 kb on + strand, within EX31_RS03395 at 166.878 kb on + strand, within EX31_RS03395 at 166.878 kb on + strand, within EX31_RS03395 at 166.878 kb on + strand, within EX31_RS03395 at 166.878 kb on + strand, within EX31_RS03395 at 166.878 kb on + strand, within EX31_RS03395 at 166.878 kb on + strand, within EX31_RS03395 at 166.879 kb on - strand, within EX31_RS03395 at 166.879 kb on - strand, within EX31_RS03395 at 167.059 kb on - strand at 167.093 kb on - strand at 167.133 kb on + strand at 167.133 kb on + strand at 167.134 kb on - strand at 167.134 kb on - strand at 167.134 kb on - strand at 167.134 kb on - strand at 167.134 kb on - strand at 167.136 kb on - strand at 167.136 kb on - strand at 167.143 kb on + strand at 167.143 kb on + strand at 167.144 kb on - strand at 167.144 kb on - strand at 167.144 kb on - strand at 167.183 kb on + strand at 167.183 kb on + strand at 167.184 kb on - strand at 167.184 kb on - strand at 167.184 kb on - strand at 167.186 kb on - strand at 167.186 kb on - strand at 167.186 kb on - strand at 167.186 kb on - strand at 167.186 kb on - strand at 167.219 kb on - strand at 167.219 kb on - strand at 167.219 kb on - strand at 167.223 kb on - strand at 167.223 kb on - strand at 167.223 kb on - strand at 167.253 kb on - strand at 167.253 kb on - strand at 167.253 kb on - strand at 167.253 kb on - strand at 167.255 kb on - strand at 167.264 kb on - strand at 167.536 kb on - strand, within EX31_RS03400 at 167.559 kb on - strand, within EX31_RS03400 at 167.709 kb on - strand, within EX31_RS03400 at 167.919 kb on - strand, within EX31_RS03400 at 167.919 kb on - strand, within EX31_RS03400 at 168.074 kb on - strand, within EX31_RS03400 at 168.285 kb on - strand, within EX31_RS03400 at 168.366 kb on - strand, within EX31_RS03400 at 168.366 kb on - strand, within EX31_RS03400 at 168.393 kb on - strand, within EX31_RS03400 at 168.398 kb on - strand, within EX31_RS03400 at 168.682 kb on - strand, within EX31_RS03400 at 168.812 kb on - strand, within EX31_RS03400 at 168.812 kb on - strand, within EX31_RS03400 at 168.812 kb on - strand, within EX31_RS03400 at 168.990 kb on - strand, within EX31_RS03400 at 169.002 kb on - strand, within EX31_RS03400 at 169.002 kb on - strand, within EX31_RS03400 at 169.037 kb on - strand, within EX31_RS03400 at 169.161 kb on - strand, within EX31_RS03400 at 169.227 kb on - strand, within EX31_RS03400 at 169.227 kb on - strand, within EX31_RS03400 at 169.274 kb on - strand, within EX31_RS03400 at 169.274 kb on - strand, within EX31_RS03400 at 169.352 kb on - strand, within EX31_RS03400 at 169.352 kb on - strand, within EX31_RS03400 at 169.352 kb on - strand, within EX31_RS03400 at 169.449 kb on - strand, within EX31_RS03400 at 169.449 kb on - strand, within EX31_RS03400 at 169.451 kb on - strand, within EX31_RS03400 at 169.451 kb on - strand, within EX31_RS03400 at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.512 kb on - strand at 169.556 kb on - strand at 169.556 kb on - strand at 169.603 kb on - strand at 169.714 kb on - strand at 169.735 kb on - strand at 169.768 kb on - strand at 169.768 kb on - strand at 169.768 kb on - strand at 169.768 kb on - strand at 169.857 kb on - strand at 169.879 kb on - strand at 169.928 kb on + strand at 170.034 kb on + strand at 170.034 kb on + strand at 170.034 kb on + strand at 170.034 kb on + strand at 170.035 kb on - strand at 170.035 kb on - strand at 170.035 kb on - strand at 170.035 kb on - strand at 170.070 kb on - strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.190 kb on + strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.191 kb on - strand at 170.192 kb on + strand at 170.192 kb on + strand at 170.241 kb on + strand at 170.241 kb on + strand at 170.241 kb on + strand at 170.242 kb on - strand at 170.242 kb on - strand at 170.242 kb on - strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.245 kb on + strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.246 kb on - strand at 170.290 kb on + strand at 170.290 kb on + strand at 170.320 kb on + strand at 170.320 kb on + strand at 170.321 kb on - strand at 170.321 kb on - strand at 170.321 kb on - strand at 170.334 kb on + strand at 170.334 kb on + strand at 170.334 kb on + strand at 170.338 kb on + strand at 170.454 kb on - strand at 170.454 kb on - strand at 170.454 kb on - strand at 170.454 kb on - strand at 170.463 kb on + strand at 170.464 kb on - strand at 170.516 kb on + strand at 170.516 kb on + strand at 170.517 kb on - strand at 170.517 kb on - strand at 170.517 kb on - strand at 170.517 kb on - strand at 170.605 kb on - strand, within EX31_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 166,163 + EX31_RS03390 0.38 -0.1 166,163 + EX31_RS03390 0.38 +0.6 166,163 + EX31_RS03390 0.38 +1.1 166,163 + EX31_RS03390 0.38 +0.5 166,163 + EX31_RS03390 0.38 -0.8 166,164 - EX31_RS03390 0.39 -0.9 166,164 - EX31_RS03390 0.39 -0.2 166,291 + EX31_RS03390 0.53 +0.5 166,330 + EX31_RS03390 0.57 -0.1 166,330 + EX31_RS03390 0.57 +0.2 166,330 + EX31_RS03390 0.57 -1.4 166,331 - EX31_RS03390 0.57 -0.6 166,331 - EX31_RS03390 0.57 -0.9 166,331 - EX31_RS03390 0.57 -1.0 166,331 - EX31_RS03390 0.57 +1.1 166,350 - EX31_RS03390 0.59 +2.1 166,356 + EX31_RS03390 0.60 -0.4 166,357 - EX31_RS03390 0.60 -0.2 166,417 + EX31_RS03390 0.67 -0.3 166,418 - EX31_RS03390 0.67 +1.1 166,418 - EX31_RS03390 0.67 -0.2 166,426 + EX31_RS03390 0.68 -1.6 166,426 + EX31_RS03390 0.68 -2.3 166,426 + EX31_RS03390 0.68 -0.3 166,426 + EX31_RS03390 0.68 +0.3 166,427 - EX31_RS03390 0.68 -0.1 166,427 - EX31_RS03390 0.68 +0.8 166,454 + EX31_RS03390 0.71 +1.8 166,454 + EX31_RS03390 0.71 -2.9 166,473 - EX31_RS03390 0.73 -1.9 166,504 + EX31_RS03390 0.77 -0.6 166,504 + EX31_RS03390 0.77 +1.1 166,505 - EX31_RS03390 0.77 +1.1 166,564 + EX31_RS03390 0.84 -1.6 166,565 - EX31_RS03390 0.84 +0.1 166,565 - EX31_RS03390 0.84 +0.7 166,611 + EX31_RS03390 0.89 -0.1 166,611 + EX31_RS03390 0.89 +0.0 166,611 + EX31_RS03390 0.89 +0.9 166,611 + EX31_RS03390 0.89 +0.3 166,611 + EX31_RS03390 0.89 -1.2 166,612 - EX31_RS03390 0.89 +0.1 166,612 - EX31_RS03390 0.89 +0.1 166,612 - EX31_RS03390 0.89 -0.6 166,612 - EX31_RS03390 0.89 +1.4 166,612 - EX31_RS03390 0.89 -0.3 166,728 + -0.4 166,728 + +0.1 166,728 + +0.4 166,789 - EX31_RS03395 0.24 +1.1 166,791 + EX31_RS03395 0.25 +0.1 166,792 - EX31_RS03395 0.25 -0.4 166,792 - EX31_RS03395 0.25 -0.2 166,792 - EX31_RS03395 0.25 +0.8 166,865 + EX31_RS03395 0.45 +0.3 166,878 + EX31_RS03395 0.49 +2.7 166,878 + EX31_RS03395 0.49 -0.9 166,878 + EX31_RS03395 0.49 +0.1 166,878 + EX31_RS03395 0.49 -0.4 166,878 + EX31_RS03395 0.49 +1.0 166,878 + EX31_RS03395 0.49 +1.1 166,879 - EX31_RS03395 0.49 +0.8 166,879 - EX31_RS03395 0.49 +0.8 167,059 - -0.1 167,093 - +1.4 167,133 + -0.0 167,133 + -1.9 167,134 - +0.9 167,134 - -0.2 167,134 - +1.7 167,134 - -0.3 167,134 - +1.6 167,136 - +0.8 167,136 - +1.1 167,143 + -0.4 167,143 + +1.7 167,144 - +1.6 167,144 - +0.0 167,144 - +0.9 167,183 + +1.1 167,183 + -0.4 167,184 - -0.3 167,184 - -0.8 167,184 - +1.6 167,186 - -0.3 167,186 - +0.3 167,186 - +1.1 167,186 - -0.0 167,186 - -0.3 167,219 - -1.4 167,219 - -1.0 167,219 - +0.3 167,223 - +0.1 167,223 - -1.0 167,223 - -3.0 167,253 - -2.3 167,253 - +1.1 167,253 - -1.7 167,253 - -0.4 167,255 - -0.9 167,264 - -1.6 167,536 - EX31_RS03400 0.15 +0.1 167,559 - EX31_RS03400 0.16 -0.4 167,709 - EX31_RS03400 0.22 +1.1 167,919 - EX31_RS03400 0.30 +1.1 167,919 - EX31_RS03400 0.30 -0.7 168,074 - EX31_RS03400 0.36 +0.1 168,285 - EX31_RS03400 0.44 +1.1 168,366 - EX31_RS03400 0.47 -0.4 168,366 - EX31_RS03400 0.47 -0.7 168,393 - EX31_RS03400 0.48 -0.6 168,398 - EX31_RS03400 0.48 -2.0 168,682 - EX31_RS03400 0.59 +2.1 168,812 - EX31_RS03400 0.64 -1.0 168,812 - EX31_RS03400 0.64 -0.9 168,812 - EX31_RS03400 0.64 +0.1 168,990 - EX31_RS03400 0.71 +1.1 169,002 - EX31_RS03400 0.72 -1.7 169,002 - EX31_RS03400 0.72 +0.1 169,037 - EX31_RS03400 0.73 +0.1 169,161 - EX31_RS03400 0.78 -1.9 169,227 - EX31_RS03400 0.80 -1.9 169,227 - EX31_RS03400 0.80 -0.4 169,274 - EX31_RS03400 0.82 -2.6 169,274 - EX31_RS03400 0.82 -2.3 169,352 - EX31_RS03400 0.85 -0.4 169,352 - EX31_RS03400 0.85 -1.7 169,352 - EX31_RS03400 0.85 +0.7 169,449 - EX31_RS03400 0.89 -1.0 169,449 - EX31_RS03400 0.89 +0.1 169,451 - EX31_RS03400 0.89 -1.8 169,451 - EX31_RS03400 0.89 +0.1 169,512 - -0.4 169,512 - +0.1 169,512 - +1.1 169,512 - -0.6 169,512 - +0.4 169,512 - -1.9 169,512 - +1.1 169,556 - +1.1 169,556 - -2.2 169,603 - -1.8 169,714 - -2.4 169,735 - +0.6 169,768 - -0.3 169,768 - -0.1 169,768 - -0.3 169,768 - -2.1 169,857 - +0.7 169,879 - +1.1 169,928 + -1.4 170,034 + -0.4 170,034 + -0.9 170,034 + -0.4 170,034 + +1.1 170,035 - +0.3 170,035 - +0.4 170,035 - -0.4 170,035 - +0.7 170,070 - +0.3 170,190 + -0.7 170,190 + -0.2 170,190 + +0.3 170,190 + -0.0 170,190 + +0.5 170,190 + +0.1 170,190 + -0.2 170,190 + +1.8 170,190 + +0.4 170,191 - +1.0 170,191 - +0.4 170,191 - -0.4 170,191 - -0.4 170,191 - -1.4 170,191 - +1.2 170,191 - +0.3 170,191 - +2.7 170,191 - +0.9 170,191 - -0.5 170,191 - -2.2 170,191 - -0.6 170,191 - -0.9 170,191 - +1.0 170,192 + +0.0 170,192 + +0.1 170,241 + +1.1 170,241 + -0.1 170,241 + +0.1 170,242 - -1.4 170,242 - +0.9 170,242 - +1.3 170,245 + +0.5 170,245 + -0.2 170,245 + +0.8 170,245 + +0.0 170,245 + +0.7 170,245 + +1.1 170,245 + +1.5 170,245 + +1.5 170,246 - -1.0 170,246 - -0.4 170,246 - +0.5 170,246 - +0.6 170,246 - +0.2 170,290 + +0.3 170,290 + +0.8 170,320 + +0.8 170,320 + +2.1 170,321 - +0.5 170,321 - +0.6 170,321 - +0.4 170,334 + +0.4 170,334 + +1.1 170,334 + +0.1 170,338 + -0.2 170,454 - +1.3 170,454 - +1.0 170,454 - +0.6 170,454 - +0.6 170,463 + +0.7 170,464 - -0.9 170,516 + +1.0 170,516 + +0.6 170,517 - -0.3 170,517 - -0.9 170,517 - +0.6 170,517 - +0.1 170,605 - EX31_RS03410 0.18 +0.5
Or see this region's nucleotide sequence