Strain Fitness in Rahnella sp. WP5 around EX31_RS03145

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03135 and EX31_RS03140 are separated by 108 nucleotidesEX31_RS03140 and EX31_RS03145 are separated by 137 nucleotidesEX31_RS03145 and EX31_RS03150 are separated by 61 nucleotides EX31_RS03135: EX31_RS03135 - cold shock domain-containing protein, at 111,045 to 111,524 _RS03135 EX31_RS03140: EX31_RS03140 - DNA oxidative demethylase AlkB, at 111,633 to 112,286 _RS03140 EX31_RS03145: EX31_RS03145 - shikimate 5-dehydrogenase, at 112,424 to 113,242 _RS03145 EX31_RS03150: EX31_RS03150 - glucarate dehydratase, at 113,304 to 114,641 _RS03150 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 111.435 kb on - strand, within EX31_RS03135at 111.435 kb on - strand, within EX31_RS03135at 111.449 kb on - strand, within EX31_RS03135at 111.476 kb on + strand, within EX31_RS03135at 111.513 kb on + strandat 111.514 kb on - strandat 111.537 kb on - strandat 111.540 kb on + strandat 111.541 kb on - strandat 111.544 kb on + strandat 111.544 kb on + strandat 111.544 kb on + strandat 111.544 kb on + strandat 111.544 kb on + strandat 111.544 kb on + strandat 111.545 kb on - strandat 111.545 kb on - strandat 111.548 kb on + strandat 111.548 kb on + strandat 111.548 kb on + strandat 111.582 kb on - strandat 111.582 kb on - strandat 111.613 kb on - strandat 111.634 kb on + strandat 111.635 kb on - strandat 111.635 kb on - strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.653 kb on + strandat 111.654 kb on - strandat 111.654 kb on - strandat 111.654 kb on - strandat 111.654 kb on - strandat 111.654 kb on - strandat 111.654 kb on - strandat 111.654 kb on - strandat 111.708 kb on + strand, within EX31_RS03140at 111.708 kb on + strand, within EX31_RS03140at 111.709 kb on - strand, within EX31_RS03140at 111.786 kb on - strand, within EX31_RS03140at 112.212 kb on + strand, within EX31_RS03140at 112.213 kb on - strand, within EX31_RS03140at 112.287 kb on - strandat 112.287 kb on - strandat 112.313 kb on + strandat 112.314 kb on - strandat 112.314 kb on - strandat 112.314 kb on - strandat 112.314 kb on - strandat 112.317 kb on + strandat 112.317 kb on + strandat 112.318 kb on - strandat 112.318 kb on - strandat 112.319 kb on + strandat 112.319 kb on + strandat 112.319 kb on + strandat 112.319 kb on + strandat 112.320 kb on - strandat 112.320 kb on - strandat 112.320 kb on - strandat 112.369 kb on + strandat 112.369 kb on + strandat 112.370 kb on - strandat 112.370 kb on - strandat 112.379 kb on + strandat 112.379 kb on + strandat 112.379 kb on + strandat 112.379 kb on + strandat 112.380 kb on - strandat 112.380 kb on - strandat 112.380 kb on - strandat 112.380 kb on - strandat 112.380 kb on - strandat 112.409 kb on + strandat 112.409 kb on + strandat 112.409 kb on + strandat 112.409 kb on + strandat 112.409 kb on + strandat 112.409 kb on + strandat 112.410 kb on - strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.459 kb on + strandat 112.460 kb on - strandat 112.460 kb on - strandat 112.460 kb on - strandat 112.460 kb on - strandat 112.460 kb on - strandat 112.504 kb on + strandat 112.505 kb on - strandat 112.514 kb on + strand, within EX31_RS03145at 112.588 kb on - strand, within EX31_RS03145at 112.697 kb on - strand, within EX31_RS03145at 112.697 kb on - strand, within EX31_RS03145at 112.697 kb on - strand, within EX31_RS03145at 112.719 kb on + strand, within EX31_RS03145at 112.719 kb on + strand, within EX31_RS03145at 112.730 kb on + strand, within EX31_RS03145at 112.730 kb on + strand, within EX31_RS03145at 112.730 kb on + strand, within EX31_RS03145at 112.730 kb on + strand, within EX31_RS03145at 112.731 kb on - strand, within EX31_RS03145at 112.731 kb on - strand, within EX31_RS03145at 112.742 kb on + strand, within EX31_RS03145at 112.742 kb on + strand, within EX31_RS03145at 112.742 kb on + strand, within EX31_RS03145at 112.742 kb on + strand, within EX31_RS03145at 112.742 kb on + strand, within EX31_RS03145at 112.743 kb on - strand, within EX31_RS03145at 112.743 kb on - strand, within EX31_RS03145at 112.743 kb on - strand, within EX31_RS03145at 112.871 kb on + strand, within EX31_RS03145at 112.871 kb on + strand, within EX31_RS03145at 112.872 kb on - strand, within EX31_RS03145at 112.872 kb on - strand, within EX31_RS03145at 112.920 kb on - strand, within EX31_RS03145at 113.180 kb on + strandat 113.180 kb on + strandat 113.180 kb on + strandat 113.180 kb on + strandat 113.180 kb on + strandat 113.180 kb on + strandat 113.180 kb on + strandat 113.181 kb on - strandat 113.181 kb on - strandat 113.181 kb on - strandat 113.191 kb on - strandat 113.211 kb on + strandat 113.211 kb on + strandat 113.211 kb on + strandat 113.211 kb on + strandat 113.212 kb on - strandat 113.289 kb on - strandat 113.290 kb on + strandat 113.291 kb on - strandat 113.291 kb on - strandat 113.291 kb on - strandat 113.298 kb on + strandat 113.305 kb on + strandat 113.404 kb on + strandat 113.404 kb on + strandat 113.404 kb on + strandat 113.405 kb on - strandat 113.481 kb on - strand, within EX31_RS03150at 113.609 kb on + strand, within EX31_RS03150at 113.609 kb on + strand, within EX31_RS03150at 113.609 kb on + strand, within EX31_RS03150at 113.624 kb on + strand, within EX31_RS03150at 113.625 kb on - strand, within EX31_RS03150at 113.744 kb on + strand, within EX31_RS03150at 113.744 kb on + strand, within EX31_RS03150at 113.745 kb on - strand, within EX31_RS03150at 113.777 kb on + strand, within EX31_RS03150at 113.777 kb on + strand, within EX31_RS03150at 113.777 kb on + strand, within EX31_RS03150at 113.778 kb on - strand, within EX31_RS03150at 113.778 kb on - strand, within EX31_RS03150at 113.778 kb on - strand, within EX31_RS03150at 113.872 kb on + strand, within EX31_RS03150at 113.936 kb on + strand, within EX31_RS03150at 113.936 kb on + strand, within EX31_RS03150at 114.015 kb on + strand, within EX31_RS03150at 114.154 kb on + strand, within EX31_RS03150at 114.188 kb on - strand, within EX31_RS03150at 114.188 kb on - strand, within EX31_RS03150

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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111,435 - EX31_RS03135 0.81 -0.9
111,435 - EX31_RS03135 0.81 -1.0
111,449 - EX31_RS03135 0.84 -0.0
111,476 + EX31_RS03135 0.90 +1.7
111,513 + -0.5
111,514 - +0.3
111,537 - -0.2
111,540 + -1.5
111,541 - +0.4
111,544 + -0.7
111,544 + +0.9
111,544 + +0.0
111,544 + +0.5
111,544 + +0.1
111,544 + +1.1
111,545 - -0.9
111,545 - +0.5
111,548 + +0.0
111,548 + +2.7
111,548 + -2.0
111,582 - +1.3
111,582 - +0.3
111,613 - -1.2
111,634 + +0.2
111,635 - +1.1
111,635 - +1.1
111,653 + +1.5
111,653 + +3.1
111,653 + +0.1
111,653 + -0.6
111,653 + -1.0
111,653 + +0.1
111,653 + -0.0
111,653 + +0.6
111,654 - -0.5
111,654 - +1.2
111,654 - +0.3
111,654 - -0.3
111,654 - +0.7
111,654 - -1.3
111,654 - +0.3
111,708 + EX31_RS03140 0.11 +0.8
111,708 + EX31_RS03140 0.11 +1.6
111,709 - EX31_RS03140 0.12 +0.7
111,786 - EX31_RS03140 0.23 +0.1
112,212 + EX31_RS03140 0.89 +0.6
112,213 - EX31_RS03140 0.89 -0.3
112,287 - +0.2
112,287 - -0.9
112,313 + +0.0
112,314 - +1.0
112,314 - -0.1
112,314 - +1.0
112,314 - +0.1
112,317 + -1.9
112,317 + +1.1
112,318 - +0.3
112,318 - +0.6
112,319 + +0.9
112,319 + +0.1
112,319 + +1.1
112,319 + +1.1
112,320 - +1.1
112,320 - -0.2
112,320 - -1.9
112,369 + +1.6
112,369 + -0.1
112,370 - +0.9
112,370 - -1.2
112,379 + +1.1
112,379 + -0.2
112,379 + +0.8
112,379 + +0.0
112,380 - -0.6
112,380 - -1.6
112,380 - +2.1
112,380 - -0.3
112,380 - -0.5
112,409 + +1.5
112,409 + +2.7
112,409 + -0.6
112,409 + -0.1
112,409 + +0.1
112,409 + +1.3
112,410 - +0.5
112,459 + +1.3
112,459 + -1.9
112,459 + +1.1
112,459 + -0.1
112,459 + +0.9
112,459 + +0.9
112,459 + +0.3
112,459 + +1.4
112,459 + +0.5
112,459 + +1.6
112,459 + +0.4
112,460 - +1.0
112,460 - +1.1
112,460 - -0.6
112,460 - -2.2
112,460 - +0.5
112,504 + +1.5
112,505 - +1.2
112,514 + EX31_RS03145 0.11 +2.7
112,588 - EX31_RS03145 0.20 +0.1
112,697 - EX31_RS03145 0.33 -0.8
112,697 - EX31_RS03145 0.33 +1.1
112,697 - EX31_RS03145 0.33 +0.9
112,719 + EX31_RS03145 0.36 +0.6
112,719 + EX31_RS03145 0.36 -1.8
112,730 + EX31_RS03145 0.37 -0.1
112,730 + EX31_RS03145 0.37 +0.4
112,730 + EX31_RS03145 0.37 +0.4
112,730 + EX31_RS03145 0.37 -1.5
112,731 - EX31_RS03145 0.37 -0.1
112,731 - EX31_RS03145 0.37 +0.5
112,742 + EX31_RS03145 0.39 -0.2
112,742 + EX31_RS03145 0.39 +0.8
112,742 + EX31_RS03145 0.39 +0.5
112,742 + EX31_RS03145 0.39 -1.5
112,742 + EX31_RS03145 0.39 -0.1
112,743 - EX31_RS03145 0.39 +1.5
112,743 - EX31_RS03145 0.39 +0.1
112,743 - EX31_RS03145 0.39 +0.7
112,871 + EX31_RS03145 0.55 -2.2
112,871 + EX31_RS03145 0.55 -0.0
112,872 - EX31_RS03145 0.55 +0.2
112,872 - EX31_RS03145 0.55 +0.9
112,920 - EX31_RS03145 0.61 +0.5
113,180 + -0.9
113,180 + -2.5
113,180 + +0.1
113,180 + +1.9
113,180 + +0.6
113,180 + -0.4
113,180 + -0.4
113,181 - +2.7
113,181 - +1.0
113,181 - +0.6
113,191 - -0.1
113,211 + -0.1
113,211 + +0.5
113,211 + -0.5
113,211 + -1.2
113,212 - -0.6
113,289 - +3.1
113,290 + +0.1
113,291 - -0.1
113,291 - +0.3
113,291 - +1.5
113,298 + -0.5
113,305 + -1.2
113,404 + +0.6
113,404 + +0.2
113,404 + +1.2
113,405 - +1.1
113,481 - EX31_RS03150 0.13 +0.6
113,609 + EX31_RS03150 0.23 +1.0
113,609 + EX31_RS03150 0.23 +0.1
113,609 + EX31_RS03150 0.23 -0.9
113,624 + EX31_RS03150 0.24 +0.5
113,625 - EX31_RS03150 0.24 -0.1
113,744 + EX31_RS03150 0.33 -0.4
113,744 + EX31_RS03150 0.33 +1.8
113,745 - EX31_RS03150 0.33 +1.4
113,777 + EX31_RS03150 0.35 +1.8
113,777 + EX31_RS03150 0.35 +0.7
113,777 + EX31_RS03150 0.35 -0.3
113,778 - EX31_RS03150 0.35 -0.5
113,778 - EX31_RS03150 0.35 +0.1
113,778 - EX31_RS03150 0.35 +0.5
113,872 + EX31_RS03150 0.42 -1.9
113,936 + EX31_RS03150 0.47 -0.7
113,936 + EX31_RS03150 0.47 +1.3
114,015 + EX31_RS03150 0.53 -2.8
114,154 + EX31_RS03150 0.64 +1.2
114,188 - EX31_RS03150 0.66 +0.4
114,188 - EX31_RS03150 0.66 +1.0

Or see this region's nucleotide sequence