Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03135 and EX31_RS03140 are separated by 108 nucleotides EX31_RS03140 and EX31_RS03145 are separated by 137 nucleotides EX31_RS03145 and EX31_RS03150 are separated by 61 nucleotides
EX31_RS03135: EX31_RS03135 - cold shock domain-containing protein, at 111,045 to 111,524
_RS03135
EX31_RS03140: EX31_RS03140 - DNA oxidative demethylase AlkB, at 111,633 to 112,286
_RS03140
EX31_RS03145: EX31_RS03145 - shikimate 5-dehydrogenase, at 112,424 to 113,242
_RS03145
EX31_RS03150: EX31_RS03150 - glucarate dehydratase, at 113,304 to 114,641
_RS03150
Position (kb)
112
113
114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 111.435 kb on - strand, within EX31_RS03135 at 111.435 kb on - strand, within EX31_RS03135 at 111.449 kb on - strand, within EX31_RS03135 at 111.476 kb on + strand, within EX31_RS03135 at 111.513 kb on + strand at 111.514 kb on - strand at 111.537 kb on - strand at 111.540 kb on + strand at 111.541 kb on - strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.545 kb on - strand at 111.545 kb on - strand at 111.548 kb on + strand at 111.548 kb on + strand at 111.548 kb on + strand at 111.582 kb on - strand at 111.582 kb on - strand at 111.613 kb on - strand at 111.634 kb on + strand at 111.635 kb on - strand at 111.635 kb on - strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.708 kb on + strand, within EX31_RS03140 at 111.708 kb on + strand, within EX31_RS03140 at 111.709 kb on - strand, within EX31_RS03140 at 111.786 kb on - strand, within EX31_RS03140 at 112.212 kb on + strand, within EX31_RS03140 at 112.213 kb on - strand, within EX31_RS03140 at 112.287 kb on - strand at 112.287 kb on - strand at 112.313 kb on + strand at 112.314 kb on - strand at 112.314 kb on - strand at 112.314 kb on - strand at 112.314 kb on - strand at 112.317 kb on + strand at 112.317 kb on + strand at 112.318 kb on - strand at 112.318 kb on - strand at 112.319 kb on + strand at 112.319 kb on + strand at 112.319 kb on + strand at 112.319 kb on + strand at 112.320 kb on - strand at 112.320 kb on - strand at 112.320 kb on - strand at 112.369 kb on + strand at 112.369 kb on + strand at 112.370 kb on - strand at 112.370 kb on - strand at 112.379 kb on + strand at 112.379 kb on + strand at 112.379 kb on + strand at 112.379 kb on + strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.410 kb on - strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.504 kb on + strand at 112.505 kb on - strand at 112.514 kb on + strand, within EX31_RS03145 at 112.588 kb on - strand, within EX31_RS03145 at 112.697 kb on - strand, within EX31_RS03145 at 112.697 kb on - strand, within EX31_RS03145 at 112.697 kb on - strand, within EX31_RS03145 at 112.719 kb on + strand, within EX31_RS03145 at 112.719 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.731 kb on - strand, within EX31_RS03145 at 112.731 kb on - strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.743 kb on - strand, within EX31_RS03145 at 112.743 kb on - strand, within EX31_RS03145 at 112.743 kb on - strand, within EX31_RS03145 at 112.871 kb on + strand, within EX31_RS03145 at 112.871 kb on + strand, within EX31_RS03145 at 112.872 kb on - strand, within EX31_RS03145 at 112.872 kb on - strand, within EX31_RS03145 at 112.920 kb on - strand, within EX31_RS03145 at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.181 kb on - strand at 113.181 kb on - strand at 113.181 kb on - strand at 113.191 kb on - strand at 113.211 kb on + strand at 113.211 kb on + strand at 113.211 kb on + strand at 113.211 kb on + strand at 113.212 kb on - strand at 113.289 kb on - strand at 113.290 kb on + strand at 113.291 kb on - strand at 113.291 kb on - strand at 113.291 kb on - strand at 113.298 kb on + strand at 113.305 kb on + strand at 113.404 kb on + strand at 113.404 kb on + strand at 113.404 kb on + strand at 113.405 kb on - strand at 113.481 kb on - strand, within EX31_RS03150 at 113.609 kb on + strand, within EX31_RS03150 at 113.609 kb on + strand, within EX31_RS03150 at 113.609 kb on + strand, within EX31_RS03150 at 113.624 kb on + strand, within EX31_RS03150 at 113.625 kb on - strand, within EX31_RS03150 at 113.744 kb on + strand, within EX31_RS03150 at 113.744 kb on + strand, within EX31_RS03150 at 113.745 kb on - strand, within EX31_RS03150 at 113.777 kb on + strand, within EX31_RS03150 at 113.777 kb on + strand, within EX31_RS03150 at 113.777 kb on + strand, within EX31_RS03150 at 113.778 kb on - strand, within EX31_RS03150 at 113.778 kb on - strand, within EX31_RS03150 at 113.778 kb on - strand, within EX31_RS03150 at 113.872 kb on + strand, within EX31_RS03150 at 113.936 kb on + strand, within EX31_RS03150 at 113.936 kb on + strand, within EX31_RS03150 at 114.015 kb on + strand, within EX31_RS03150 at 114.154 kb on + strand, within EX31_RS03150 at 114.188 kb on - strand, within EX31_RS03150 at 114.188 kb on - strand, within EX31_RS03150
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 111,435 - EX31_RS03135 0.81 -0.9 111,435 - EX31_RS03135 0.81 -1.0 111,449 - EX31_RS03135 0.84 -0.0 111,476 + EX31_RS03135 0.90 +1.7 111,513 + -0.5 111,514 - +0.3 111,537 - -0.2 111,540 + -1.5 111,541 - +0.4 111,544 + -0.7 111,544 + +0.9 111,544 + +0.0 111,544 + +0.5 111,544 + +0.1 111,544 + +1.1 111,545 - -0.9 111,545 - +0.5 111,548 + +0.0 111,548 + +2.7 111,548 + -2.0 111,582 - +1.3 111,582 - +0.3 111,613 - -1.2 111,634 + +0.2 111,635 - +1.1 111,635 - +1.1 111,653 + +1.5 111,653 + +3.1 111,653 + +0.1 111,653 + -0.6 111,653 + -1.0 111,653 + +0.1 111,653 + -0.0 111,653 + +0.6 111,654 - -0.5 111,654 - +1.2 111,654 - +0.3 111,654 - -0.3 111,654 - +0.7 111,654 - -1.3 111,654 - +0.3 111,708 + EX31_RS03140 0.11 +0.8 111,708 + EX31_RS03140 0.11 +1.6 111,709 - EX31_RS03140 0.12 +0.7 111,786 - EX31_RS03140 0.23 +0.1 112,212 + EX31_RS03140 0.89 +0.6 112,213 - EX31_RS03140 0.89 -0.3 112,287 - +0.2 112,287 - -0.9 112,313 + +0.0 112,314 - +1.0 112,314 - -0.1 112,314 - +1.0 112,314 - +0.1 112,317 + -1.9 112,317 + +1.1 112,318 - +0.3 112,318 - +0.6 112,319 + +0.9 112,319 + +0.1 112,319 + +1.1 112,319 + +1.1 112,320 - +1.1 112,320 - -0.2 112,320 - -1.9 112,369 + +1.6 112,369 + -0.1 112,370 - +0.9 112,370 - -1.2 112,379 + +1.1 112,379 + -0.2 112,379 + +0.8 112,379 + +0.0 112,380 - -0.6 112,380 - -1.6 112,380 - +2.1 112,380 - -0.3 112,380 - -0.5 112,409 + +1.5 112,409 + +2.7 112,409 + -0.6 112,409 + -0.1 112,409 + +0.1 112,409 + +1.3 112,410 - +0.5 112,459 + +1.3 112,459 + -1.9 112,459 + +1.1 112,459 + -0.1 112,459 + +0.9 112,459 + +0.9 112,459 + +0.3 112,459 + +1.4 112,459 + +0.5 112,459 + +1.6 112,459 + +0.4 112,460 - +1.0 112,460 - +1.1 112,460 - -0.6 112,460 - -2.2 112,460 - +0.5 112,504 + +1.5 112,505 - +1.2 112,514 + EX31_RS03145 0.11 +2.7 112,588 - EX31_RS03145 0.20 +0.1 112,697 - EX31_RS03145 0.33 -0.8 112,697 - EX31_RS03145 0.33 +1.1 112,697 - EX31_RS03145 0.33 +0.9 112,719 + EX31_RS03145 0.36 +0.6 112,719 + EX31_RS03145 0.36 -1.8 112,730 + EX31_RS03145 0.37 -0.1 112,730 + EX31_RS03145 0.37 +0.4 112,730 + EX31_RS03145 0.37 +0.4 112,730 + EX31_RS03145 0.37 -1.5 112,731 - EX31_RS03145 0.37 -0.1 112,731 - EX31_RS03145 0.37 +0.5 112,742 + EX31_RS03145 0.39 -0.2 112,742 + EX31_RS03145 0.39 +0.8 112,742 + EX31_RS03145 0.39 +0.5 112,742 + EX31_RS03145 0.39 -1.5 112,742 + EX31_RS03145 0.39 -0.1 112,743 - EX31_RS03145 0.39 +1.5 112,743 - EX31_RS03145 0.39 +0.1 112,743 - EX31_RS03145 0.39 +0.7 112,871 + EX31_RS03145 0.55 -2.2 112,871 + EX31_RS03145 0.55 -0.0 112,872 - EX31_RS03145 0.55 +0.2 112,872 - EX31_RS03145 0.55 +0.9 112,920 - EX31_RS03145 0.61 +0.5 113,180 + -0.9 113,180 + -2.5 113,180 + +0.1 113,180 + +1.9 113,180 + +0.6 113,180 + -0.4 113,180 + -0.4 113,181 - +2.7 113,181 - +1.0 113,181 - +0.6 113,191 - -0.1 113,211 + -0.1 113,211 + +0.5 113,211 + -0.5 113,211 + -1.2 113,212 - -0.6 113,289 - +3.1 113,290 + +0.1 113,291 - -0.1 113,291 - +0.3 113,291 - +1.5 113,298 + -0.5 113,305 + -1.2 113,404 + +0.6 113,404 + +0.2 113,404 + +1.2 113,405 - +1.1 113,481 - EX31_RS03150 0.13 +0.6 113,609 + EX31_RS03150 0.23 +1.0 113,609 + EX31_RS03150 0.23 +0.1 113,609 + EX31_RS03150 0.23 -0.9 113,624 + EX31_RS03150 0.24 +0.5 113,625 - EX31_RS03150 0.24 -0.1 113,744 + EX31_RS03150 0.33 -0.4 113,744 + EX31_RS03150 0.33 +1.8 113,745 - EX31_RS03150 0.33 +1.4 113,777 + EX31_RS03150 0.35 +1.8 113,777 + EX31_RS03150 0.35 +0.7 113,777 + EX31_RS03150 0.35 -0.3 113,778 - EX31_RS03150 0.35 -0.5 113,778 - EX31_RS03150 0.35 +0.1 113,778 - EX31_RS03150 0.35 +0.5 113,872 + EX31_RS03150 0.42 -1.9 113,936 + EX31_RS03150 0.47 -0.7 113,936 + EX31_RS03150 0.47 +1.3 114,015 + EX31_RS03150 0.53 -2.8 114,154 + EX31_RS03150 0.64 +1.2 114,188 - EX31_RS03150 0.66 +0.4 114,188 - EX31_RS03150 0.66 +1.0
Or see this region's nucleotide sequence