Strain Fitness in Rahnella sp. WP5 around EX31_RS03085

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03075 and EX31_RS03080 are separated by 142 nucleotidesEX31_RS03080 and EX31_RS03085 are separated by 22 nucleotidesEX31_RS03085 and EX31_RS03090 are separated by 447 nucleotides EX31_RS03075: EX31_RS03075 - LysR family transcriptional regulator, at 97,389 to 98,330 _RS03075 EX31_RS03080: EX31_RS03080 - glycoside hydrolase family 108 protein, at 98,473 to 99,015 _RS03080 EX31_RS03085: EX31_RS03085 - hypothetical protein, at 99,038 to 99,484 _RS03085 EX31_RS03090: EX31_RS03090 - chitinase, at 99,932 to 102,073 _RS03090 Position (kb) 99 100Strain fitness (log2 ratio) -2 -1 0 1 2 3at 98.070 kb on + strand, within EX31_RS03075at 98.070 kb on + strand, within EX31_RS03075at 98.085 kb on - strand, within EX31_RS03075at 98.195 kb on + strand, within EX31_RS03075at 98.195 kb on + strand, within EX31_RS03075at 98.196 kb on - strand, within EX31_RS03075at 98.211 kb on + strand, within EX31_RS03075at 98.284 kb on - strandat 98.335 kb on + strandat 98.420 kb on + strandat 98.445 kb on - strandat 98.527 kb on - strandat 98.550 kb on - strand, within EX31_RS03080at 98.571 kb on + strand, within EX31_RS03080at 98.571 kb on + strand, within EX31_RS03080at 98.571 kb on + strand, within EX31_RS03080at 98.572 kb on - strand, within EX31_RS03080at 98.574 kb on + strand, within EX31_RS03080at 98.574 kb on + strand, within EX31_RS03080at 98.575 kb on - strand, within EX31_RS03080at 98.575 kb on - strand, within EX31_RS03080at 98.575 kb on - strand, within EX31_RS03080at 98.681 kb on + strand, within EX31_RS03080at 98.681 kb on + strand, within EX31_RS03080at 98.684 kb on + strand, within EX31_RS03080at 98.684 kb on + strand, within EX31_RS03080at 98.685 kb on - strand, within EX31_RS03080at 98.685 kb on - strand, within EX31_RS03080at 98.685 kb on - strand, within EX31_RS03080at 98.685 kb on - strand, within EX31_RS03080at 98.685 kb on - strand, within EX31_RS03080at 98.700 kb on + strand, within EX31_RS03080at 98.700 kb on + strand, within EX31_RS03080at 98.700 kb on + strand, within EX31_RS03080at 98.700 kb on + strand, within EX31_RS03080at 98.701 kb on - strand, within EX31_RS03080at 98.701 kb on - strand, within EX31_RS03080at 98.704 kb on + strand, within EX31_RS03080at 98.704 kb on + strand, within EX31_RS03080at 98.704 kb on + strand, within EX31_RS03080at 98.705 kb on - strand, within EX31_RS03080at 98.825 kb on + strand, within EX31_RS03080at 98.831 kb on + strand, within EX31_RS03080at 98.831 kb on + strand, within EX31_RS03080at 98.831 kb on + strand, within EX31_RS03080at 98.832 kb on - strand, within EX31_RS03080at 98.852 kb on + strand, within EX31_RS03080at 98.852 kb on + strand, within EX31_RS03080at 98.852 kb on + strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.853 kb on - strand, within EX31_RS03080at 98.889 kb on + strand, within EX31_RS03080at 98.891 kb on + strand, within EX31_RS03080at 98.891 kb on + strand, within EX31_RS03080at 98.891 kb on + strand, within EX31_RS03080at 98.891 kb on + strand, within EX31_RS03080at 98.891 kb on + strand, within EX31_RS03080at 98.892 kb on - strand, within EX31_RS03080at 98.892 kb on - strand, within EX31_RS03080at 98.892 kb on - strand, within EX31_RS03080at 98.892 kb on - strand, within EX31_RS03080at 98.892 kb on - strand, within EX31_RS03080at 98.897 kb on + strand, within EX31_RS03080at 98.897 kb on + strand, within EX31_RS03080at 98.922 kb on + strand, within EX31_RS03080at 98.946 kb on + strand, within EX31_RS03080at 98.962 kb on + strandat 98.962 kb on + strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.963 kb on - strandat 98.966 kb on + strandat 98.967 kb on - strandat 98.995 kb on - strandat 99.015 kb on + strandat 99.015 kb on + strandat 99.015 kb on + strandat 99.015 kb on + strandat 99.016 kb on - strandat 99.016 kb on - strandat 99.016 kb on - strandat 99.016 kb on - strandat 99.080 kb on + strandat 99.108 kb on - strand, within EX31_RS03085at 99.138 kb on - strand, within EX31_RS03085at 99.138 kb on - strand, within EX31_RS03085at 99.173 kb on - strand, within EX31_RS03085at 99.202 kb on + strand, within EX31_RS03085at 99.202 kb on + strand, within EX31_RS03085at 99.203 kb on - strand, within EX31_RS03085at 99.248 kb on + strand, within EX31_RS03085at 99.248 kb on + strand, within EX31_RS03085at 99.253 kb on - strand, within EX31_RS03085at 99.253 kb on - strand, within EX31_RS03085at 99.362 kb on - strand, within EX31_RS03085at 99.471 kb on + strandat 99.472 kb on - strandat 99.474 kb on - strandat 99.474 kb on - strandat 99.586 kb on - strandat 99.591 kb on + strandat 99.640 kb on + strandat 99.641 kb on - strandat 99.743 kb on - strandat 99.770 kb on - strandat 99.905 kb on + strandat 99.983 kb on - strandat 100.030 kb on + strandat 100.031 kb on - strandat 100.031 kb on - strandat 100.058 kb on + strandat 100.058 kb on + strandat 100.059 kb on - strandat 100.061 kb on - strandat 100.100 kb on + strandat 100.103 kb on + strandat 100.103 kb on + strandat 100.121 kb on + strandat 100.121 kb on + strandat 100.121 kb on + strandat 100.122 kb on - strandat 100.122 kb on - strandat 100.122 kb on - strandat 100.206 kb on - strand, within EX31_RS03090at 100.265 kb on - strand, within EX31_RS03090at 100.265 kb on - strand, within EX31_RS03090at 100.295 kb on - strand, within EX31_RS03090at 100.416 kb on + strand, within EX31_RS03090at 100.416 kb on + strand, within EX31_RS03090at 100.416 kb on + strand, within EX31_RS03090at 100.416 kb on + strand, within EX31_RS03090at 100.416 kb on + strand, within EX31_RS03090at 100.417 kb on - strand, within EX31_RS03090at 100.417 kb on - strand, within EX31_RS03090at 100.417 kb on - strand, within EX31_RS03090at 100.437 kb on + strand, within EX31_RS03090at 100.437 kb on + strand, within EX31_RS03090at 100.437 kb on + strand, within EX31_RS03090at 100.437 kb on + strand, within EX31_RS03090at 100.438 kb on - strand, within EX31_RS03090at 100.438 kb on - strand, within EX31_RS03090at 100.438 kb on - strand, within EX31_RS03090at 100.438 kb on - strand, within EX31_RS03090

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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98,070 + EX31_RS03075 0.72 -1.3
98,070 + EX31_RS03075 0.72 +0.3
98,085 - EX31_RS03075 0.74 +1.1
98,195 + EX31_RS03075 0.86 -0.0
98,195 + EX31_RS03075 0.86 +1.1
98,196 - EX31_RS03075 0.86 -1.0
98,211 + EX31_RS03075 0.87 +1.1
98,284 - -1.2
98,335 + +3.3
98,420 + -2.0
98,445 - -0.6
98,527 - -0.9
98,550 - EX31_RS03080 0.14 -0.1
98,571 + EX31_RS03080 0.18 -0.3
98,571 + EX31_RS03080 0.18 +1.1
98,571 + EX31_RS03080 0.18 +0.2
98,572 - EX31_RS03080 0.18 -0.0
98,574 + EX31_RS03080 0.19 +1.1
98,574 + EX31_RS03080 0.19 -1.3
98,575 - EX31_RS03080 0.19 +1.4
98,575 - EX31_RS03080 0.19 +0.5
98,575 - EX31_RS03080 0.19 +1.1
98,681 + EX31_RS03080 0.38 +1.1
98,681 + EX31_RS03080 0.38 +2.1
98,684 + EX31_RS03080 0.39 -0.5
98,684 + EX31_RS03080 0.39 -0.9
98,685 - EX31_RS03080 0.39 +0.1
98,685 - EX31_RS03080 0.39 -0.5
98,685 - EX31_RS03080 0.39 +0.0
98,685 - EX31_RS03080 0.39 -0.2
98,685 - EX31_RS03080 0.39 -0.6
98,700 + EX31_RS03080 0.42 +0.2
98,700 + EX31_RS03080 0.42 +1.5
98,700 + EX31_RS03080 0.42 +0.1
98,700 + EX31_RS03080 0.42 +0.3
98,701 - EX31_RS03080 0.42 -0.1
98,701 - EX31_RS03080 0.42 -2.3
98,704 + EX31_RS03080 0.43 +0.4
98,704 + EX31_RS03080 0.43 +0.4
98,704 + EX31_RS03080 0.43 +0.7
98,705 - EX31_RS03080 0.43 +1.1
98,825 + EX31_RS03080 0.65 +1.3
98,831 + EX31_RS03080 0.66 +1.1
98,831 + EX31_RS03080 0.66 +0.7
98,831 + EX31_RS03080 0.66 +0.4
98,832 - EX31_RS03080 0.66 -0.9
98,852 + EX31_RS03080 0.70 -0.5
98,852 + EX31_RS03080 0.70 +1.1
98,852 + EX31_RS03080 0.70 +0.5
98,853 - EX31_RS03080 0.70 +0.0
98,853 - EX31_RS03080 0.70 -0.8
98,853 - EX31_RS03080 0.70 +1.1
98,853 - EX31_RS03080 0.70 +1.7
98,853 - EX31_RS03080 0.70 -1.6
98,853 - EX31_RS03080 0.70 -1.1
98,853 - EX31_RS03080 0.70 -0.9
98,889 + EX31_RS03080 0.77 +1.4
98,891 + EX31_RS03080 0.77 +0.1
98,891 + EX31_RS03080 0.77 +0.2
98,891 + EX31_RS03080 0.77 +1.3
98,891 + EX31_RS03080 0.77 -0.5
98,891 + EX31_RS03080 0.77 +0.5
98,892 - EX31_RS03080 0.77 +2.4
98,892 - EX31_RS03080 0.77 +0.8
98,892 - EX31_RS03080 0.77 -1.5
98,892 - EX31_RS03080 0.77 -0.5
98,892 - EX31_RS03080 0.77 -0.6
98,897 + EX31_RS03080 0.78 -0.9
98,897 + EX31_RS03080 0.78 +0.6
98,922 + EX31_RS03080 0.83 +0.6
98,946 + EX31_RS03080 0.87 +1.1
98,962 + -0.3
98,962 + -0.2
98,963 - +0.3
98,963 - -1.3
98,963 - +1.1
98,963 - +1.1
98,963 - -1.5
98,963 - -1.2
98,963 - -0.8
98,963 - -0.3
98,966 + +1.6
98,967 - -0.2
98,995 - +0.7
99,015 + +0.8
99,015 + +0.4
99,015 + +0.7
99,015 + -1.9
99,016 - +0.1
99,016 - +0.0
99,016 - -0.7
99,016 - -0.4
99,080 + +1.3
99,108 - EX31_RS03085 0.16 -0.4
99,138 - EX31_RS03085 0.22 -0.8
99,138 - EX31_RS03085 0.22 -0.9
99,173 - EX31_RS03085 0.30 -0.8
99,202 + EX31_RS03085 0.37 +0.1
99,202 + EX31_RS03085 0.37 +2.1
99,203 - EX31_RS03085 0.37 -0.7
99,248 + EX31_RS03085 0.47 +0.1
99,248 + EX31_RS03085 0.47 -0.5
99,253 - EX31_RS03085 0.48 -0.2
99,253 - EX31_RS03085 0.48 -0.9
99,362 - EX31_RS03085 0.72 -0.5
99,471 + -0.5
99,472 - +2.3
99,474 - -0.2
99,474 - -0.9
99,586 - -1.2
99,591 + +0.9
99,640 + +0.8
99,641 - -0.8
99,743 - -0.3
99,770 - +0.5
99,905 + -0.4
99,983 - -0.1
100,030 + +0.4
100,031 - +0.7
100,031 - +1.1
100,058 + +0.8
100,058 + +0.1
100,059 - -0.5
100,061 - +2.1
100,100 + -1.3
100,103 + -0.1
100,103 + -1.0
100,121 + +0.8
100,121 + -1.2
100,121 + -0.4
100,122 - +0.1
100,122 - -0.7
100,122 - +1.0
100,206 - EX31_RS03090 0.13 -0.0
100,265 - EX31_RS03090 0.16 +2.1
100,265 - EX31_RS03090 0.16 -1.2
100,295 - EX31_RS03090 0.17 +0.4
100,416 + EX31_RS03090 0.23 +0.5
100,416 + EX31_RS03090 0.23 -0.6
100,416 + EX31_RS03090 0.23 +1.1
100,416 + EX31_RS03090 0.23 +1.9
100,416 + EX31_RS03090 0.23 +0.8
100,417 - EX31_RS03090 0.23 +0.6
100,417 - EX31_RS03090 0.23 -0.1
100,417 - EX31_RS03090 0.23 +0.9
100,437 + EX31_RS03090 0.24 -0.7
100,437 + EX31_RS03090 0.24 -0.3
100,437 + EX31_RS03090 0.24 -1.2
100,437 + EX31_RS03090 0.24 +0.2
100,438 - EX31_RS03090 0.24 -0.5
100,438 - EX31_RS03090 0.24 -0.5
100,438 - EX31_RS03090 0.24 +2.6
100,438 - EX31_RS03090 0.24 +0.9

Or see this region's nucleotide sequence