Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02405 and EX31_RS02410 are separated by 319 nucleotides EX31_RS02410 and EX31_RS02415 are separated by 285 nucleotides EX31_RS02415 and EX31_RS02420 overlap by 20 nucleotides
EX31_RS02405: EX31_RS02405 - MFS transporter, at 511,273 to 512,484
_RS02405
EX31_RS02410: EX31_RS02410 - multidrug DMT transporter, at 512,804 to 513,139
_RS02410
EX31_RS02415: EX31_RS02415 - hypothetical protein, at 513,425 to 513,727
_RS02415
EX31_RS02420: EX31_RS02420 - type III PLP-dependent enzyme, at 513,708 to 515,015
_RS02420
Position (kb) 513
514 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 512.532 kb on - strand at 512.597 kb on - strand at 512.604 kb on - strand at 512.619 kb on - strand at 512.619 kb on - strand at 512.683 kb on + strand at 512.683 kb on + strand at 512.684 kb on - strand at 512.684 kb on - strand at 512.684 kb on - strand at 512.689 kb on + strand at 512.690 kb on - strand at 512.717 kb on + strand at 512.728 kb on + strand at 512.821 kb on + strand at 512.821 kb on + strand at 512.822 kb on - strand at 512.827 kb on - strand at 512.827 kb on - strand at 512.842 kb on + strand, within EX31_RS02410 at 512.843 kb on - strand, within EX31_RS02410 at 512.843 kb on - strand, within EX31_RS02410 at 512.901 kb on + strand, within EX31_RS02410 at 512.901 kb on + strand, within EX31_RS02410 at 513.128 kb on + strand at 513.140 kb on - strand at 513.140 kb on - strand at 513.140 kb on - strand at 513.140 kb on - strand at 513.140 kb on - strand at 513.140 kb on - strand at 513.140 kb on - strand at 513.162 kb on + strand at 513.193 kb on + strand at 513.199 kb on - strand at 513.285 kb on - strand at 513.344 kb on - strand at 513.388 kb on - strand at 513.430 kb on + strand at 513.455 kb on - strand at 513.457 kb on - strand, within EX31_RS02415 at 513.457 kb on - strand, within EX31_RS02415 at 513.491 kb on - strand, within EX31_RS02415 at 513.982 kb on + strand, within EX31_RS02420 at 514.007 kb on + strand, within EX31_RS02420 at 514.007 kb on + strand, within EX31_RS02420 at 514.008 kb on - strand, within EX31_RS02420 at 514.033 kb on - strand, within EX31_RS02420 at 514.118 kb on + strand, within EX31_RS02420 at 514.119 kb on - strand, within EX31_RS02420 at 514.141 kb on + strand, within EX31_RS02420 at 514.301 kb on + strand, within EX31_RS02420 at 514.301 kb on + strand, within EX31_RS02420 at 514.301 kb on + strand, within EX31_RS02420 at 514.301 kb on + strand, within EX31_RS02420 at 514.302 kb on - strand, within EX31_RS02420 at 514.302 kb on - strand, within EX31_RS02420 at 514.302 kb on - strand, within EX31_RS02420 at 514.305 kb on + strand, within EX31_RS02420 at 514.305 kb on + strand, within EX31_RS02420 at 514.305 kb on + strand, within EX31_RS02420 at 514.305 kb on + strand, within EX31_RS02420 at 514.306 kb on - strand, within EX31_RS02420 at 514.512 kb on + strand, within EX31_RS02420 at 514.512 kb on + strand, within EX31_RS02420 at 514.512 kb on + strand, within EX31_RS02420 at 514.512 kb on + strand, within EX31_RS02420 at 514.513 kb on - strand, within EX31_RS02420 at 514.535 kb on + strand, within EX31_RS02420 at 514.535 kb on + strand, within EX31_RS02420 at 514.697 kb on + strand, within EX31_RS02420
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 512,532 - -0.2 512,597 - -0.2 512,604 - -0.5 512,619 - +0.4 512,619 - +0.6 512,683 + +0.2 512,683 + -0.4 512,684 - -1.8 512,684 - +0.8 512,684 - -0.2 512,689 + +0.4 512,690 - -0.4 512,717 + -0.5 512,728 + +0.2 512,821 + +0.5 512,821 + -0.3 512,822 - -0.8 512,827 - +0.4 512,827 - +0.0 512,842 + EX31_RS02410 0.11 +0.3 512,843 - EX31_RS02410 0.12 -0.2 512,843 - EX31_RS02410 0.12 -0.8 512,901 + EX31_RS02410 0.29 -1.2 512,901 + EX31_RS02410 0.29 -1.2 513,128 + -0.2 513,140 - +0.3 513,140 - +0.1 513,140 - +0.2 513,140 - -0.2 513,140 - -0.2 513,140 - +0.1 513,140 - -1.5 513,162 + -0.9 513,193 + +1.5 513,199 - -0.4 513,285 - +0.1 513,344 - -0.2 513,388 - -0.5 513,430 + +0.3 513,455 - +0.6 513,457 - EX31_RS02415 0.11 +2.4 513,457 - EX31_RS02415 0.11 -0.5 513,491 - EX31_RS02415 0.22 +1.2 513,982 + EX31_RS02420 0.21 +0.4 514,007 + EX31_RS02420 0.23 +1.1 514,007 + EX31_RS02420 0.23 +2.4 514,008 - EX31_RS02420 0.23 +0.5 514,033 - EX31_RS02420 0.25 -2.3 514,118 + EX31_RS02420 0.31 +0.7 514,119 - EX31_RS02420 0.31 -1.5 514,141 + EX31_RS02420 0.33 +0.2 514,301 + EX31_RS02420 0.45 +0.8 514,301 + EX31_RS02420 0.45 +0.3 514,301 + EX31_RS02420 0.45 +0.2 514,301 + EX31_RS02420 0.45 -0.6 514,302 - EX31_RS02420 0.45 -0.2 514,302 - EX31_RS02420 0.45 -0.5 514,302 - EX31_RS02420 0.45 -0.2 514,305 + EX31_RS02420 0.46 +0.2 514,305 + EX31_RS02420 0.46 -0.6 514,305 + EX31_RS02420 0.46 +2.8 514,305 + EX31_RS02420 0.46 -0.5 514,306 - EX31_RS02420 0.46 +1.8 514,512 + EX31_RS02420 0.61 -0.8 514,512 + EX31_RS02420 0.61 -2.0 514,512 + EX31_RS02420 0.61 +0.2 514,512 + EX31_RS02420 0.61 +0.2 514,513 - EX31_RS02420 0.62 -0.5 514,535 + EX31_RS02420 0.63 +1.7 514,535 + EX31_RS02420 0.63 -0.8 514,697 + EX31_RS02420 0.76 +0.6
Or see this region's nucleotide sequence