Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02190 and EX31_RS02195 are separated by 244 nucleotides EX31_RS02195 and EX31_RS02200 are separated by 207 nucleotides EX31_RS02200 and EX31_RS02205 overlap by 4 nucleotides
EX31_RS02190: EX31_RS02190 - transporter, at 477,015 to 478,394
_RS02190
EX31_RS02195: EX31_RS02195 - MarR family transcriptional regulator, at 478,639 to 479,058
_RS02195
EX31_RS02200: EX31_RS02200 - Hcp family type VI secretion system effector, at 479,266 to 479,748
_RS02200
EX31_RS02205: EX31_RS02205 - DUF2778 domain-containing protein, at 479,745 to 480,221
_RS02205
Position (kb) 478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 477.724 kb on - strand, within EX31_RS02190 at 477.724 kb on - strand, within EX31_RS02190 at 477.930 kb on - strand, within EX31_RS02190 at 477.962 kb on + strand, within EX31_RS02190 at 477.963 kb on - strand, within EX31_RS02190 at 477.972 kb on - strand, within EX31_RS02190 at 477.983 kb on + strand, within EX31_RS02190 at 477.983 kb on + strand, within EX31_RS02190 at 478.017 kb on - strand, within EX31_RS02190 at 478.027 kb on + strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.048 kb on + strand, within EX31_RS02190 at 478.048 kb on + strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.063 kb on + strand, within EX31_RS02190 at 478.064 kb on - strand, within EX31_RS02190 at 478.064 kb on - strand, within EX31_RS02190 at 478.074 kb on - strand, within EX31_RS02190 at 478.105 kb on + strand, within EX31_RS02190 at 478.105 kb on + strand, within EX31_RS02190 at 478.106 kb on - strand, within EX31_RS02190 at 478.114 kb on - strand, within EX31_RS02190 at 478.135 kb on - strand, within EX31_RS02190 at 478.135 kb on - strand, within EX31_RS02190 at 478.151 kb on + strand, within EX31_RS02190 at 478.151 kb on + strand, within EX31_RS02190 at 478.151 kb on + strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.153 kb on + strand, within EX31_RS02190 at 478.154 kb on - strand, within EX31_RS02190 at 478.291 kb on + strand at 478.374 kb on + strand at 478.414 kb on - strand at 478.460 kb on + strand at 478.462 kb on + strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.471 kb on + strand at 478.489 kb on - strand at 478.498 kb on + strand at 478.499 kb on - strand at 478.586 kb on - strand at 478.599 kb on + strand at 478.604 kb on + strand at 478.604 kb on + strand at 478.605 kb on - strand at 478.619 kb on - strand at 478.893 kb on + strand, within EX31_RS02195 at 478.893 kb on + strand, within EX31_RS02195 at 478.908 kb on + strand, within EX31_RS02195 at 478.911 kb on + strand, within EX31_RS02195 at 478.911 kb on + strand, within EX31_RS02195 at 478.912 kb on - strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.971 kb on - strand, within EX31_RS02195 at 479.037 kb on + strand at 479.038 kb on - strand at 479.056 kb on + strand at 479.057 kb on - strand at 479.067 kb on + strand at 479.203 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.235 kb on - strand at 479.235 kb on - strand at 479.236 kb on + strand at 479.237 kb on - strand at 479.282 kb on - strand at 479.285 kb on + strand at 479.387 kb on + strand, within EX31_RS02200 at 479.391 kb on + strand, within EX31_RS02200 at 479.391 kb on + strand, within EX31_RS02200 at 479.429 kb on + strand, within EX31_RS02200 at 479.430 kb on - strand, within EX31_RS02200 at 479.482 kb on + strand, within EX31_RS02200 at 479.482 kb on + strand, within EX31_RS02200 at 479.483 kb on - strand, within EX31_RS02200 at 479.525 kb on + strand, within EX31_RS02200 at 479.525 kb on + strand, within EX31_RS02200 at 479.525 kb on + strand, within EX31_RS02200 at 479.526 kb on - strand, within EX31_RS02200 at 479.526 kb on - strand, within EX31_RS02200 at 479.567 kb on - strand, within EX31_RS02200 at 479.575 kb on - strand, within EX31_RS02200 at 479.575 kb on - strand, within EX31_RS02200 at 479.592 kb on - strand, within EX31_RS02200 at 479.646 kb on + strand, within EX31_RS02200 at 479.652 kb on + strand, within EX31_RS02200 at 479.653 kb on - strand, within EX31_RS02200 at 479.716 kb on - strand at 479.767 kb on + strand at 479.780 kb on + strand at 479.782 kb on + strand at 479.782 kb on + strand at 479.782 kb on + strand at 479.783 kb on - strand at 479.791 kb on + strand at 479.791 kb on + strand at 479.792 kb on - strand at 479.792 kb on - strand at 479.901 kb on + strand, within EX31_RS02205 at 479.901 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.937 kb on + strand, within EX31_RS02205 at 479.938 kb on - strand, within EX31_RS02205 at 479.957 kb on + strand, within EX31_RS02205 at 479.957 kb on + strand, within EX31_RS02205 at 480.014 kb on + strand, within EX31_RS02205 at 480.014 kb on + strand, within EX31_RS02205 at 480.015 kb on - strand, within EX31_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 477,724 - EX31_RS02190 0.51 +0.2 477,724 - EX31_RS02190 0.51 +0.1 477,930 - EX31_RS02190 0.66 -0.2 477,962 + EX31_RS02190 0.69 -0.8 477,963 - EX31_RS02190 0.69 +0.5 477,972 - EX31_RS02190 0.69 -1.5 477,983 + EX31_RS02190 0.70 -0.7 477,983 + EX31_RS02190 0.70 -0.7 478,017 - EX31_RS02190 0.73 -1.5 478,027 + EX31_RS02190 0.73 +0.4 478,028 - EX31_RS02190 0.73 -0.4 478,028 - EX31_RS02190 0.73 +0.2 478,028 - EX31_RS02190 0.73 +0.4 478,028 - EX31_RS02190 0.73 -0.2 478,048 + EX31_RS02190 0.75 +0.2 478,048 + EX31_RS02190 0.75 -0.4 478,049 - EX31_RS02190 0.75 +0.8 478,049 - EX31_RS02190 0.75 -0.5 478,049 - EX31_RS02190 0.75 -0.8 478,049 - EX31_RS02190 0.75 +3.2 478,063 + EX31_RS02190 0.76 +1.8 478,064 - EX31_RS02190 0.76 +1.8 478,064 - EX31_RS02190 0.76 -1.8 478,074 - EX31_RS02190 0.77 -1.5 478,105 + EX31_RS02190 0.79 -0.8 478,105 + EX31_RS02190 0.79 -0.0 478,106 - EX31_RS02190 0.79 -0.2 478,114 - EX31_RS02190 0.80 +0.2 478,135 - EX31_RS02190 0.81 +0.2 478,135 - EX31_RS02190 0.81 -0.3 478,151 + EX31_RS02190 0.82 -2.0 478,151 + EX31_RS02190 0.82 +1.8 478,151 + EX31_RS02190 0.82 +1.6 478,152 - EX31_RS02190 0.82 -0.9 478,152 - EX31_RS02190 0.82 -0.2 478,152 - EX31_RS02190 0.82 +0.5 478,152 - EX31_RS02190 0.82 -0.2 478,152 - EX31_RS02190 0.82 +1.8 478,153 + EX31_RS02190 0.82 +0.2 478,154 - EX31_RS02190 0.83 -1.5 478,291 + +1.6 478,374 + +1.6 478,414 - +0.8 478,460 + -0.2 478,462 + +0.8 478,463 - +1.0 478,463 - -1.3 478,463 - +0.8 478,463 - -0.9 478,463 - +0.8 478,471 + +0.8 478,489 - -2.5 478,498 + +0.1 478,499 - -0.2 478,586 - -0.8 478,599 + +3.2 478,604 + +0.8 478,604 + -0.3 478,605 - +1.4 478,619 - +1.8 478,893 + EX31_RS02195 0.60 +1.8 478,893 + EX31_RS02195 0.60 +0.2 478,908 + EX31_RS02195 0.64 +0.3 478,911 + EX31_RS02195 0.65 +0.6 478,911 + EX31_RS02195 0.65 +1.2 478,912 - EX31_RS02195 0.65 +0.2 478,970 + EX31_RS02195 0.79 -2.5 478,970 + EX31_RS02195 0.79 +2.7 478,970 + EX31_RS02195 0.79 +2.2 478,971 - EX31_RS02195 0.79 +1.1 479,037 + +0.5 479,038 - -0.2 479,056 + -0.8 479,057 - +0.2 479,067 + -0.5 479,203 + -1.5 479,234 + -0.8 479,234 + +1.4 479,234 + -0.2 479,234 + +0.2 479,234 + -0.2 479,235 - +1.0 479,235 - -0.2 479,236 + +0.5 479,237 - +0.7 479,282 - +0.6 479,285 + -1.6 479,387 + EX31_RS02200 0.25 +1.6 479,391 + EX31_RS02200 0.26 -0.5 479,391 + EX31_RS02200 0.26 +0.1 479,429 + EX31_RS02200 0.34 -1.0 479,430 - EX31_RS02200 0.34 +0.8 479,482 + EX31_RS02200 0.45 +0.1 479,482 + EX31_RS02200 0.45 +1.1 479,483 - EX31_RS02200 0.45 -0.1 479,525 + EX31_RS02200 0.54 -0.9 479,525 + EX31_RS02200 0.54 -1.2 479,525 + EX31_RS02200 0.54 +1.6 479,526 - EX31_RS02200 0.54 +0.2 479,526 - EX31_RS02200 0.54 -1.3 479,567 - EX31_RS02200 0.62 +3.4 479,575 - EX31_RS02200 0.64 -0.6 479,575 - EX31_RS02200 0.64 +0.8 479,592 - EX31_RS02200 0.67 -0.8 479,646 + EX31_RS02200 0.79 -0.4 479,652 + EX31_RS02200 0.80 -0.4 479,653 - EX31_RS02200 0.80 +0.5 479,716 - +0.5 479,767 + +0.2 479,780 + +0.1 479,782 + +0.8 479,782 + +0.1 479,782 + +2.6 479,783 - -0.8 479,791 + +1.4 479,791 + -0.7 479,792 - +0.3 479,792 - +1.2 479,901 + EX31_RS02205 0.33 +0.8 479,901 + EX31_RS02205 0.33 +1.2 479,904 + EX31_RS02205 0.33 +2.4 479,904 + EX31_RS02205 0.33 -0.8 479,904 + EX31_RS02205 0.33 +0.2 479,904 + EX31_RS02205 0.33 +0.5 479,904 + EX31_RS02205 0.33 +0.8 479,905 - EX31_RS02205 0.34 +0.8 479,905 - EX31_RS02205 0.34 -0.5 479,905 - EX31_RS02205 0.34 -1.8 479,905 - EX31_RS02205 0.34 +1.1 479,905 - EX31_RS02205 0.34 -0.2 479,937 + EX31_RS02205 0.40 -1.2 479,938 - EX31_RS02205 0.40 +1.1 479,957 + EX31_RS02205 0.44 +0.3 479,957 + EX31_RS02205 0.44 +0.1 480,014 + EX31_RS02205 0.56 -0.9 480,014 + EX31_RS02205 0.56 -0.2 480,015 - EX31_RS02205 0.57 -1.5
Or see this region's nucleotide sequence