Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01800 and EX31_RS01805 are separated by 610 nucleotides EX31_RS01805 and EX31_RS01810 are separated by 158 nucleotides EX31_RS01810 and EX31_RS01815 are separated by 229 nucleotides
EX31_RS01800: EX31_RS01800 - porin, at 385,481 to 386,152
_RS01800
EX31_RS01805: EX31_RS01805 - hypothetical protein, at 386,763 to 386,951
_RS01805
EX31_RS01810: EX31_RS01810 - hypothetical protein, at 387,110 to 387,523
_RS01810
EX31_RS01815: EX31_RS01815 - (S)-acetoin forming diacetyl reductase, at 387,753 to 388,532
_RS01815
Position (kb) 386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.808 kb on - strand, within EX31_RS01800 at 385.882 kb on + strand, within EX31_RS01800 at 385.986 kb on + strand, within EX31_RS01800 at 385.986 kb on + strand, within EX31_RS01800 at 385.987 kb on - strand, within EX31_RS01800 at 385.987 kb on - strand, within EX31_RS01800 at 385.987 kb on - strand, within EX31_RS01800 at 385.991 kb on + strand, within EX31_RS01800 at 386.075 kb on - strand, within EX31_RS01800 at 386.082 kb on - strand, within EX31_RS01800 at 386.082 kb on - strand, within EX31_RS01800 at 386.424 kb on + strand at 386.449 kb on - strand at 386.451 kb on - strand at 386.491 kb on - strand at 386.636 kb on + strand at 386.681 kb on + strand at 386.757 kb on + strand at 386.757 kb on + strand at 386.855 kb on + strand, within EX31_RS01805 at 386.855 kb on + strand, within EX31_RS01805 at 386.904 kb on - strand, within EX31_RS01805 at 386.937 kb on + strand at 386.937 kb on + strand at 386.938 kb on - strand at 386.938 kb on - strand at 386.938 kb on - strand at 387.046 kb on + strand at 387.046 kb on + strand at 387.047 kb on - strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.113 kb on + strand at 387.113 kb on + strand at 387.114 kb on - strand at 387.114 kb on - strand at 387.177 kb on - strand, within EX31_RS01810 at 387.509 kb on - strand at 387.509 kb on - strand at 387.509 kb on - strand at 387.543 kb on + strand at 387.544 kb on - strand at 387.544 kb on - strand at 387.544 kb on - strand at 387.549 kb on + strand at 387.549 kb on + strand at 387.550 kb on - strand at 387.550 kb on - strand at 387.560 kb on - strand at 387.613 kb on + strand at 387.627 kb on - strand at 387.656 kb on - strand at 387.735 kb on + strand at 387.735 kb on + strand at 387.735 kb on + strand at 387.736 kb on - strand at 387.736 kb on - strand at 387.739 kb on + strand at 387.740 kb on - strand at 387.740 kb on - strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.753 kb on - strand at 387.753 kb on - strand at 387.753 kb on - strand at 387.863 kb on + strand, within EX31_RS01815 at 387.914 kb on + strand, within EX31_RS01815
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 385,808 - EX31_RS01800 0.49 -1.4 385,882 + EX31_RS01800 0.60 +0.5 385,986 + EX31_RS01800 0.75 +2.4 385,986 + EX31_RS01800 0.75 +2.8 385,987 - EX31_RS01800 0.75 +0.2 385,987 - EX31_RS01800 0.75 +0.2 385,987 - EX31_RS01800 0.75 +0.1 385,991 + EX31_RS01800 0.76 +1.4 386,075 - EX31_RS01800 0.88 +0.1 386,082 - EX31_RS01800 0.89 -0.5 386,082 - EX31_RS01800 0.89 +0.2 386,424 + -1.8 386,449 - +2.0 386,451 - +0.3 386,491 - +0.2 386,636 + +1.8 386,681 + +0.6 386,757 + +0.8 386,757 + +1.8 386,855 + EX31_RS01805 0.49 -0.4 386,855 + EX31_RS01805 0.49 -1.8 386,904 - EX31_RS01805 0.75 -1.2 386,937 + -0.5 386,937 + +0.2 386,938 - +0.8 386,938 - -0.8 386,938 - +0.1 387,046 + -0.9 387,046 + -0.2 387,047 - +0.8 387,111 + -0.3 387,111 + -0.9 387,113 + +1.1 387,113 + -0.7 387,114 - +1.1 387,114 - -0.2 387,177 - EX31_RS01810 0.16 -0.8 387,509 - -0.2 387,509 - +0.6 387,509 - +1.2 387,543 + -0.4 387,544 - +1.2 387,544 - -0.2 387,544 - +0.8 387,549 + +0.8 387,549 + +0.8 387,550 - -0.2 387,550 - +0.2 387,560 - +0.5 387,613 + -0.1 387,627 - -0.2 387,656 - -0.2 387,735 + +1.8 387,735 + -0.9 387,735 + +0.5 387,736 - +1.0 387,736 - -2.8 387,739 + +0.8 387,740 - -0.1 387,740 - -0.0 387,752 + +1.8 387,752 + +0.1 387,752 + +0.3 387,752 + +0.4 387,752 + -1.8 387,753 - -1.2 387,753 - +0.4 387,753 - +2.1 387,863 + EX31_RS01815 0.14 -1.0 387,914 + EX31_RS01815 0.21 +0.1
Or see this region's nucleotide sequence