Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25900 and EX31_RS01780 are separated by 660 nucleotides EX31_RS01780 and EX31_RS01785 are separated by 34 nucleotides
EX31_RS25900: EX31_RS25900 - hypothetical protein, at 381,524 to 381,772
_RS25900
EX31_RS01780: EX31_RS01780 - hypothetical protein, at 382,433 to 382,804
_RS01780
EX31_RS01785: EX31_RS01785 - YfdQ family protein, at 382,839 to 383,666
_RS01785
Position (kb) 382
383 Strain fitness (log2 ratio) -1
0
1
2 at 381.442 kb on - strand at 381.530 kb on - strand at 381.583 kb on - strand, within EX31_RS25900 at 381.780 kb on + strand at 381.805 kb on - strand at 381.825 kb on + strand at 381.825 kb on + strand at 381.825 kb on + strand at 381.832 kb on - strand at 381.832 kb on - strand at 381.868 kb on + strand at 381.869 kb on - strand at 381.876 kb on + strand at 381.924 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 382.006 kb on - strand at 382.078 kb on + strand at 382.092 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.281 kb on - strand at 382.321 kb on + strand at 382.380 kb on + strand at 382.381 kb on - strand at 382.447 kb on + strand at 382.447 kb on + strand at 382.447 kb on + strand at 382.448 kb on - strand at 382.523 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.703 kb on + strand, within EX31_RS01780 at 382.704 kb on - strand, within EX31_RS01780 at 382.704 kb on - strand, within EX31_RS01780 at 382.836 kb on - strand at 382.836 kb on - strand at 382.836 kb on - strand at 382.836 kb on - strand at 382.838 kb on + strand at 382.838 kb on + strand at 382.839 kb on - strand at 382.839 kb on - strand at 383.058 kb on + strand, within EX31_RS01785 at 383.171 kb on + strand, within EX31_RS01785 at 383.171 kb on + strand, within EX31_RS01785 at 383.416 kb on + strand, within EX31_RS01785 at 383.416 kb on + strand, within EX31_RS01785 at 383.438 kb on + strand, within EX31_RS01785 at 383.438 kb on + strand, within EX31_RS01785 at 383.439 kb on - strand, within EX31_RS01785 at 383.460 kb on - strand, within EX31_RS01785 at 383.472 kb on + strand, within EX31_RS01785 at 383.473 kb on - strand, within EX31_RS01785 at 383.679 kb on - strand at 383.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 381,442 - +1.2 381,530 - +1.1 381,583 - EX31_RS25900 0.24 +2.4 381,780 + -0.8 381,805 - -0.3 381,825 + +1.8 381,825 + +0.6 381,825 + -0.2 381,832 - -0.0 381,832 - +0.2 381,868 + -0.2 381,869 - +0.8 381,876 + -0.5 381,924 - -1.6 381,949 - -1.5 381,949 - +1.8 381,949 - +1.1 381,949 - +1.0 382,006 - -0.7 382,078 + -0.2 382,092 + -0.5 382,221 + +0.3 382,221 + +1.8 382,221 + +1.4 382,221 + +2.4 382,221 + +0.6 382,221 + +0.8 382,221 + +0.3 382,221 + -0.8 382,221 + +1.4 382,281 - +0.2 382,321 + +0.7 382,380 + +1.8 382,381 - -1.2 382,447 + +1.3 382,447 + -0.6 382,447 + -0.6 382,448 - +0.6 382,523 - EX31_RS01780 0.24 +1.8 382,655 - EX31_RS01780 0.60 +1.8 382,655 - EX31_RS01780 0.60 +1.4 382,655 - EX31_RS01780 0.60 +0.8 382,655 - EX31_RS01780 0.60 +0.8 382,703 + EX31_RS01780 0.73 +0.8 382,704 - EX31_RS01780 0.73 -0.2 382,704 - EX31_RS01780 0.73 -0.3 382,836 - -1.0 382,836 - +0.8 382,836 - +2.1 382,836 - +2.2 382,838 + +0.8 382,838 + +0.1 382,839 - -0.5 382,839 - -0.4 383,058 + EX31_RS01785 0.26 +1.8 383,171 + EX31_RS01785 0.40 +2.4 383,171 + EX31_RS01785 0.40 -0.7 383,416 + EX31_RS01785 0.70 -0.2 383,416 + EX31_RS01785 0.70 -0.0 383,438 + EX31_RS01785 0.72 +1.2 383,438 + EX31_RS01785 0.72 -0.8 383,439 - EX31_RS01785 0.72 -0.5 383,460 - EX31_RS01785 0.75 -0.8 383,472 + EX31_RS01785 0.76 +1.6 383,473 - EX31_RS01785 0.77 +0.4 383,679 - +2.4 383,715 + -0.4
Or see this region's nucleotide sequence