Strain Fitness in Rahnella sp. WP5 around EX31_RS01660

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01650 and EX31_RS25070 are separated by 408 nucleotidesEX31_RS25070 and EX31_RS01655 are separated by 90 nucleotidesEX31_RS01655 and EX31_RS01660 are separated by 62 nucleotidesEX31_RS01660 and EX31_RS01665 are separated by 10 nucleotidesEX31_RS01665 and EX31_RS01670 overlap by 8 nucleotides EX31_RS01650: EX31_RS01650 - hypothetical protein, at 366,474 to 366,851 _RS01650 EX31_RS25070: EX31_RS25070 - DUF551 domain-containing protein, at 367,260 to 367,463 _RS25070 EX31_RS01655: EX31_RS01655 - hypothetical protein, at 367,554 to 367,757 _RS01655 EX31_RS01660: EX31_RS01660 - hypothetical protein, at 367,820 to 368,077 _RS01660 EX31_RS01665: EX31_RS01665 - lysis protein, at 368,088 to 368,594 _RS01665 EX31_RS01670: EX31_RS01670 - lysozyme, at 368,587 to 369,117 _RS01670 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2 3at 366.849 kb on + strandat 366.936 kb on - strandat 366.952 kb on - strandat 366.963 kb on + strandat 366.964 kb on - strandat 366.964 kb on - strandat 367.153 kb on + strandat 367.153 kb on + strandat 367.154 kb on - strandat 367.173 kb on + strandat 367.174 kb on - strandat 367.174 kb on - strandat 367.174 kb on - strandat 367.174 kb on - strandat 367.228 kb on - strandat 367.253 kb on - strandat 367.262 kb on - strandat 367.262 kb on - strandat 367.315 kb on + strand, within EX31_RS25070at 367.357 kb on - strand, within EX31_RS25070at 367.357 kb on - strand, within EX31_RS25070at 367.366 kb on + strand, within EX31_RS25070at 367.394 kb on + strand, within EX31_RS25070at 367.541 kb on + strandat 367.541 kb on + strandat 367.542 kb on - strandat 367.542 kb on - strandat 367.542 kb on - strandat 367.542 kb on - strandat 367.546 kb on - strandat 367.559 kb on - strandat 367.595 kb on - strand, within EX31_RS01655at 367.657 kb on + strand, within EX31_RS01655at 367.721 kb on + strand, within EX31_RS01655at 367.722 kb on - strand, within EX31_RS01655at 367.722 kb on - strand, within EX31_RS01655at 367.725 kb on + strand, within EX31_RS01655at 367.726 kb on - strand, within EX31_RS01655at 367.726 kb on - strand, within EX31_RS01655at 367.761 kb on + strandat 367.762 kb on - strandat 367.770 kb on + strandat 367.770 kb on + strandat 367.804 kb on + strandat 367.805 kb on - strandat 367.807 kb on + strandat 367.807 kb on + strandat 367.808 kb on - strandat 367.812 kb on - strandat 367.812 kb on - strandat 367.821 kb on + strandat 367.822 kb on - strandat 367.908 kb on + strand, within EX31_RS01660at 367.909 kb on - strand, within EX31_RS01660at 367.909 kb on - strand, within EX31_RS01660at 367.948 kb on + strand, within EX31_RS01660at 367.985 kb on - strand, within EX31_RS01660at 368.021 kb on - strand, within EX31_RS01660at 368.044 kb on + strand, within EX31_RS01660at 368.090 kb on - strandat 368.126 kb on - strandat 368.126 kb on - strandat 368.126 kb on - strandat 368.704 kb on - strand, within EX31_RS01670at 368.836 kb on + strand, within EX31_RS01670at 368.837 kb on - strand, within EX31_RS01670at 368.837 kb on - strand, within EX31_RS01670at 368.837 kb on - strand, within EX31_RS01670at 368.845 kb on - strand, within EX31_RS01670at 368.908 kb on - strand, within EX31_RS01670at 368.951 kb on + strand, within EX31_RS01670at 368.952 kb on - strand, within EX31_RS01670at 368.952 kb on - strand, within EX31_RS01670at 368.970 kb on + strand, within EX31_RS01670

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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366,849 + +1.8
366,936 - -0.2
366,952 - -0.8
366,963 + +1.1
366,964 - -0.5
366,964 - +0.1
367,153 + +1.0
367,153 + +0.1
367,154 - +1.2
367,173 + +0.4
367,174 - -0.4
367,174 - +0.4
367,174 - -1.5
367,174 - +1.2
367,228 - +1.0
367,253 - +0.8
367,262 - -0.2
367,262 - +0.5
367,315 + EX31_RS25070 0.27 -1.8
367,357 - EX31_RS25070 0.48 +0.2
367,357 - EX31_RS25070 0.48 +0.4
367,366 + EX31_RS25070 0.52 +1.1
367,394 + EX31_RS25070 0.66 +0.4
367,541 + +0.6
367,541 + -1.2
367,542 - -0.6
367,542 - -0.2
367,542 - -0.2
367,542 - +0.8
367,546 - +0.8
367,559 - +0.8
367,595 - EX31_RS01655 0.20 -0.2
367,657 + EX31_RS01655 0.50 +0.4
367,721 + EX31_RS01655 0.82 +0.2
367,722 - EX31_RS01655 0.82 +0.8
367,722 - EX31_RS01655 0.82 -1.2
367,725 + EX31_RS01655 0.84 +0.0
367,726 - EX31_RS01655 0.84 +0.7
367,726 - EX31_RS01655 0.84 +2.8
367,761 + -2.2
367,762 - -2.0
367,770 + +2.0
367,770 + +1.3
367,804 + -0.2
367,805 - -0.8
367,807 + +0.6
367,807 + +2.0
367,808 - +0.3
367,812 - -1.3
367,812 - +0.4
367,821 + +0.8
367,822 - +0.2
367,908 + EX31_RS01660 0.34 -0.2
367,909 - EX31_RS01660 0.34 +0.8
367,909 - EX31_RS01660 0.34 +1.8
367,948 + EX31_RS01660 0.50 +0.2
367,985 - EX31_RS01660 0.64 +0.8
368,021 - EX31_RS01660 0.78 +1.3
368,044 + EX31_RS01660 0.87 +0.6
368,090 - -0.0
368,126 - -0.4
368,126 - -0.2
368,126 - +2.1
368,704 - EX31_RS01670 0.22 +1.4
368,836 + EX31_RS01670 0.47 +0.8
368,837 - EX31_RS01670 0.47 -0.2
368,837 - EX31_RS01670 0.47 -0.7
368,837 - EX31_RS01670 0.47 -0.8
368,845 - EX31_RS01670 0.49 +0.3
368,908 - EX31_RS01670 0.60 -0.2
368,951 + EX31_RS01670 0.69 -0.2
368,952 - EX31_RS01670 0.69 +0.2
368,952 - EX31_RS01670 0.69 -0.4
368,970 + EX31_RS01670 0.72 +0.6

Or see this region's nucleotide sequence