Strain Fitness in Rahnella sp. WP5 around EX31_RS01645

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01640 and EX31_RS01645 overlap by 1 nucleotidesEX31_RS01645 and EX31_RS01650 are separated by 393 nucleotides EX31_RS01640: EX31_RS01640 - phage terminase large subunit family protein, at 363,490 to 365,592 _RS01640 EX31_RS01645: EX31_RS01645 - DUF1441 family protein, at 365,592 to 366,080 _RS01645 EX31_RS01650: EX31_RS01650 - hypothetical protein, at 366,474 to 366,851 _RS01650 Position (kb) 365 366 367Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 364.881 kb on + strand, within EX31_RS01640at 364.883 kb on + strand, within EX31_RS01640at 364.883 kb on + strand, within EX31_RS01640at 364.883 kb on + strand, within EX31_RS01640at 364.884 kb on - strand, within EX31_RS01640at 364.885 kb on + strand, within EX31_RS01640at 364.885 kb on + strand, within EX31_RS01640at 364.885 kb on + strand, within EX31_RS01640at 364.886 kb on - strand, within EX31_RS01640at 364.998 kb on + strand, within EX31_RS01640at 364.998 kb on + strand, within EX31_RS01640at 364.998 kb on + strand, within EX31_RS01640at 364.998 kb on + strand, within EX31_RS01640at 364.999 kb on - strand, within EX31_RS01640at 364.999 kb on - strand, within EX31_RS01640at 364.999 kb on - strand, within EX31_RS01640at 364.999 kb on - strand, within EX31_RS01640at 365.073 kb on - strand, within EX31_RS01640at 365.094 kb on + strand, within EX31_RS01640at 365.094 kb on + strand, within EX31_RS01640at 365.095 kb on - strand, within EX31_RS01640at 365.095 kb on - strand, within EX31_RS01640at 365.139 kb on + strand, within EX31_RS01640at 365.139 kb on + strand, within EX31_RS01640at 365.139 kb on + strand, within EX31_RS01640at 365.140 kb on - strand, within EX31_RS01640at 365.145 kb on - strand, within EX31_RS01640at 365.145 kb on - strand, within EX31_RS01640at 365.149 kb on - strand, within EX31_RS01640at 365.236 kb on - strand, within EX31_RS01640at 365.324 kb on + strand, within EX31_RS01640at 365.325 kb on - strand, within EX31_RS01640at 365.325 kb on - strand, within EX31_RS01640at 365.359 kb on - strand, within EX31_RS01640at 365.396 kb on + strandat 365.422 kb on - strandat 365.435 kb on + strandat 365.436 kb on - strandat 365.493 kb on + strandat 365.493 kb on + strandat 365.493 kb on + strandat 365.493 kb on + strandat 365.493 kb on + strandat 365.494 kb on - strandat 365.494 kb on - strandat 365.494 kb on - strandat 365.494 kb on - strandat 365.495 kb on + strandat 365.495 kb on + strandat 365.495 kb on + strandat 365.496 kb on - strandat 365.523 kb on + strandat 365.524 kb on - strandat 365.542 kb on + strandat 365.543 kb on - strandat 365.543 kb on - strandat 365.551 kb on + strandat 365.673 kb on - strand, within EX31_RS01645at 365.679 kb on + strand, within EX31_RS01645at 365.805 kb on + strand, within EX31_RS01645at 365.806 kb on - strand, within EX31_RS01645at 365.806 kb on - strand, within EX31_RS01645at 365.947 kb on - strand, within EX31_RS01645at 366.327 kb on + strandat 366.351 kb on - strandat 366.396 kb on - strandat 366.396 kb on - strandat 366.397 kb on + strandat 366.398 kb on - strandat 366.417 kb on + strandat 366.418 kb on - strandat 366.418 kb on - strandat 366.456 kb on + strandat 366.458 kb on + strandat 366.459 kb on - strandat 366.459 kb on - strandat 366.459 kb on - strandat 366.459 kb on - strandat 366.459 kb on - strandat 366.459 kb on - strandat 366.463 kb on - strandat 366.463 kb on - strandat 366.499 kb on + strandat 366.499 kb on + strandat 366.500 kb on - strandat 366.510 kb on - strandat 366.694 kb on - strand, within EX31_RS01650at 366.746 kb on - strand, within EX31_RS01650at 366.746 kb on - strand, within EX31_RS01650at 366.761 kb on + strand, within EX31_RS01650at 366.761 kb on + strand, within EX31_RS01650at 366.774 kb on - strand, within EX31_RS01650at 366.791 kb on + strand, within EX31_RS01650at 366.849 kb on + strandat 366.936 kb on - strandat 366.952 kb on - strandat 366.963 kb on + strandat 366.964 kb on - strandat 366.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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364,881 + EX31_RS01640 0.66 +0.6
364,883 + EX31_RS01640 0.66 -1.4
364,883 + EX31_RS01640 0.66 +0.1
364,883 + EX31_RS01640 0.66 +0.6
364,884 - EX31_RS01640 0.66 -0.2
364,885 + EX31_RS01640 0.66 +0.7
364,885 + EX31_RS01640 0.66 +1.8
364,885 + EX31_RS01640 0.66 +1.8
364,886 - EX31_RS01640 0.66 -1.5
364,998 + EX31_RS01640 0.72 -0.1
364,998 + EX31_RS01640 0.72 +1.6
364,998 + EX31_RS01640 0.72 +1.2
364,998 + EX31_RS01640 0.72 +0.4
364,999 - EX31_RS01640 0.72 +2.0
364,999 - EX31_RS01640 0.72 +2.4
364,999 - EX31_RS01640 0.72 -0.9
364,999 - EX31_RS01640 0.72 +0.6
365,073 - EX31_RS01640 0.75 +1.0
365,094 + EX31_RS01640 0.76 +3.1
365,094 + EX31_RS01640 0.76 +0.7
365,095 - EX31_RS01640 0.76 +0.8
365,095 - EX31_RS01640 0.76 -0.2
365,139 + EX31_RS01640 0.78 +0.0
365,139 + EX31_RS01640 0.78 +0.8
365,139 + EX31_RS01640 0.78 +0.1
365,140 - EX31_RS01640 0.78 -0.2
365,145 - EX31_RS01640 0.79 +2.1
365,145 - EX31_RS01640 0.79 -0.6
365,149 - EX31_RS01640 0.79 +0.5
365,236 - EX31_RS01640 0.83 -0.4
365,324 + EX31_RS01640 0.87 +1.3
365,325 - EX31_RS01640 0.87 -1.2
365,325 - EX31_RS01640 0.87 -1.8
365,359 - EX31_RS01640 0.89 +2.5
365,396 + +1.0
365,422 - +0.8
365,435 + +0.8
365,436 - +1.0
365,493 + +0.1
365,493 + +0.8
365,493 + +2.4
365,493 + +0.8
365,493 + +4.0
365,494 - +0.4
365,494 - -0.2
365,494 - +0.1
365,494 - +1.4
365,495 + -1.5
365,495 + -0.9
365,495 + +1.1
365,496 - +0.8
365,523 + -0.8
365,524 - -0.8
365,542 + +1.8
365,543 - -1.8
365,543 - +1.0
365,551 + -2.0
365,673 - EX31_RS01645 0.17 +1.1
365,679 + EX31_RS01645 0.18 -0.6
365,805 + EX31_RS01645 0.44 +0.1
365,806 - EX31_RS01645 0.44 +1.1
365,806 - EX31_RS01645 0.44 +2.6
365,947 - EX31_RS01645 0.73 +1.6
366,327 + +2.4
366,351 - -0.5
366,396 - -0.2
366,396 - +1.4
366,397 + -0.0
366,398 - +3.1
366,417 + -0.2
366,418 - +0.5
366,418 - +1.6
366,456 + -1.0
366,458 + +1.0
366,459 - +1.2
366,459 - -1.8
366,459 - +0.8
366,459 - -0.0
366,459 - +0.8
366,459 - -1.5
366,463 - +2.6
366,463 - -0.0
366,499 + -1.3
366,499 + +3.0
366,500 - -0.3
366,510 - +0.6
366,694 - EX31_RS01650 0.58 +0.6
366,746 - EX31_RS01650 0.72 +0.6
366,746 - EX31_RS01650 0.72 +1.6
366,761 + EX31_RS01650 0.76 +0.3
366,761 + EX31_RS01650 0.76 +1.2
366,774 - EX31_RS01650 0.79 +1.2
366,791 + EX31_RS01650 0.84 +2.4
366,849 + +1.8
366,936 - -0.2
366,952 - -0.8
366,963 + +1.1
366,964 - -0.5
366,964 - +0.1

Or see this region's nucleotide sequence