Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01585 and EX31_RS01590 overlap by 20 nucleotides EX31_RS01590 and EX31_RS01595 are separated by 20 nucleotides EX31_RS01595 and EX31_RS01600 are separated by 10 nucleotides EX31_RS01600 and EX31_RS01605 are separated by 7 nucleotides EX31_RS01605 and EX31_RS01610 overlap by 4 nucleotides EX31_RS01610 and EX31_RS01615 are separated by 8 nucleotides
EX31_RS01585: EX31_RS01585 - phage tail tape measure protein, at 354,342 to 356,672
_RS01585
EX31_RS01590: EX31_RS01590 - phage tail assembly protein T, at 356,653 to 356,967
_RS01590
EX31_RS01595: EX31_RS01595 - phage minor tail protein G, at 356,988 to 357,395
_RS01595
EX31_RS01600: EX31_RS01600 - tail fiber protein, at 357,406 to 358,143
_RS01600
EX31_RS01605: EX31_RS01605 - tail protein, at 358,151 to 358,555
_RS01605
EX31_RS01610: EX31_RS01610 - phage tail protein, at 358,552 to 359,103
_RS01610
EX31_RS01615: EX31_RS01615 - DNA breaking-rejoining protein, at 359,112 to 359,387
_RS01615
Position (kb) 357
358
359 Strain fitness (log2 ratio) -1
0
1
2
3 at 356.477 kb on + strand at 356.600 kb on - strand at 356.600 kb on - strand at 356.711 kb on - strand, within EX31_RS01590 at 356.711 kb on - strand, within EX31_RS01590 at 356.782 kb on - strand, within EX31_RS01590 at 356.800 kb on + strand, within EX31_RS01590 at 356.800 kb on + strand, within EX31_RS01590 at 356.801 kb on - strand, within EX31_RS01590 at 356.913 kb on + strand, within EX31_RS01590 at 356.913 kb on + strand, within EX31_RS01590 at 356.913 kb on + strand, within EX31_RS01590 at 356.914 kb on - strand, within EX31_RS01590 at 357.344 kb on - strand, within EX31_RS01595 at 357.435 kb on + strand at 357.435 kb on + strand at 357.436 kb on - strand at 357.490 kb on - strand, within EX31_RS01600 at 357.511 kb on - strand, within EX31_RS01600 at 357.715 kb on - strand, within EX31_RS01600 at 357.849 kb on - strand, within EX31_RS01600 at 357.903 kb on + strand, within EX31_RS01600 at 357.904 kb on - strand, within EX31_RS01600 at 357.975 kb on - strand, within EX31_RS01600 at 358.070 kb on + strand at 358.144 kb on - strand at 358.158 kb on - strand at 358.161 kb on + strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.174 kb on - strand at 358.222 kb on - strand, within EX31_RS01605 at 358.227 kb on + strand, within EX31_RS01605 at 358.227 kb on + strand, within EX31_RS01605 at 358.228 kb on - strand, within EX31_RS01605 at 358.350 kb on - strand, within EX31_RS01605 at 358.423 kb on - strand, within EX31_RS01605 at 358.550 kb on + strand at 358.550 kb on + strand at 358.560 kb on + strand at 358.646 kb on + strand, within EX31_RS01610 at 358.646 kb on + strand, within EX31_RS01610 at 358.647 kb on - strand, within EX31_RS01610 at 358.657 kb on - strand, within EX31_RS01610 at 358.774 kb on - strand, within EX31_RS01610 at 359.058 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 356,477 + +0.1 356,600 - +1.4 356,600 - -0.5 356,711 - EX31_RS01590 0.18 +1.8 356,711 - EX31_RS01590 0.18 +1.8 356,782 - EX31_RS01590 0.41 +0.1 356,800 + EX31_RS01590 0.47 +0.8 356,800 + EX31_RS01590 0.47 +0.8 356,801 - EX31_RS01590 0.47 +0.8 356,913 + EX31_RS01590 0.83 +1.6 356,913 + EX31_RS01590 0.83 -1.2 356,913 + EX31_RS01590 0.83 +0.6 356,914 - EX31_RS01590 0.83 +1.3 357,344 - EX31_RS01595 0.87 -0.2 357,435 + -0.2 357,435 + +0.8 357,436 - -0.3 357,490 - EX31_RS01600 0.11 -0.8 357,511 - EX31_RS01600 0.14 +1.3 357,715 - EX31_RS01600 0.42 +0.8 357,849 - EX31_RS01600 0.60 +1.6 357,903 + EX31_RS01600 0.67 +2.3 357,904 - EX31_RS01600 0.67 -0.5 357,975 - EX31_RS01600 0.77 +1.8 358,070 + +0.0 358,144 - -0.8 358,158 - -0.4 358,161 + +0.6 358,162 - +0.2 358,162 - +0.5 358,162 - +1.5 358,162 - +0.6 358,162 - -0.8 358,162 - +0.8 358,162 - +0.8 358,174 - +2.2 358,222 - EX31_RS01605 0.18 +0.8 358,227 + EX31_RS01605 0.19 +0.8 358,227 + EX31_RS01605 0.19 +0.2 358,228 - EX31_RS01605 0.19 +0.8 358,350 - EX31_RS01605 0.49 +0.1 358,423 - EX31_RS01605 0.67 -0.2 358,550 + +1.4 358,550 + +0.2 358,560 + +2.8 358,646 + EX31_RS01610 0.17 +1.3 358,646 + EX31_RS01610 0.17 +0.8 358,647 - EX31_RS01610 0.17 +0.4 358,657 - EX31_RS01610 0.19 +0.1 358,774 - EX31_RS01610 0.40 +1.5 359,058 + -0.6 359,103 + -1.0 359,103 + +0.2 359,103 + +0.4
Or see this region's nucleotide sequence