Strain Fitness in Rahnella sp. WP5 around EX31_RS01590

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01585 and EX31_RS01590 overlap by 20 nucleotidesEX31_RS01590 and EX31_RS01595 are separated by 20 nucleotidesEX31_RS01595 and EX31_RS01600 are separated by 10 nucleotides EX31_RS01585: EX31_RS01585 - phage tail tape measure protein, at 354,342 to 356,672 _RS01585 EX31_RS01590: EX31_RS01590 - phage tail assembly protein T, at 356,653 to 356,967 _RS01590 EX31_RS01595: EX31_RS01595 - phage minor tail protein G, at 356,988 to 357,395 _RS01595 EX31_RS01600: EX31_RS01600 - tail fiber protein, at 357,406 to 358,143 _RS01600 Position (kb) 356 357Strain fitness (log2 ratio) -1 0 1 2 3at 355.701 kb on - strand, within EX31_RS01585at 355.735 kb on + strand, within EX31_RS01585at 355.736 kb on - strand, within EX31_RS01585at 355.743 kb on - strand, within EX31_RS01585at 355.743 kb on - strand, within EX31_RS01585at 355.813 kb on - strand, within EX31_RS01585at 355.885 kb on - strand, within EX31_RS01585at 356.127 kb on - strand, within EX31_RS01585at 356.154 kb on - strand, within EX31_RS01585at 356.189 kb on + strand, within EX31_RS01585at 356.189 kb on + strand, within EX31_RS01585at 356.190 kb on - strand, within EX31_RS01585at 356.190 kb on - strand, within EX31_RS01585at 356.196 kb on + strand, within EX31_RS01585at 356.196 kb on + strand, within EX31_RS01585at 356.197 kb on - strand, within EX31_RS01585at 356.197 kb on - strand, within EX31_RS01585at 356.197 kb on - strand, within EX31_RS01585at 356.254 kb on + strand, within EX31_RS01585at 356.323 kb on + strand, within EX31_RS01585at 356.323 kb on + strand, within EX31_RS01585at 356.323 kb on + strand, within EX31_RS01585at 356.323 kb on + strand, within EX31_RS01585at 356.323 kb on + strand, within EX31_RS01585at 356.323 kb on + strand, within EX31_RS01585at 356.324 kb on - strand, within EX31_RS01585at 356.324 kb on - strand, within EX31_RS01585at 356.324 kb on - strand, within EX31_RS01585at 356.334 kb on + strand, within EX31_RS01585at 356.477 kb on + strandat 356.600 kb on - strandat 356.600 kb on - strandat 356.711 kb on - strand, within EX31_RS01590at 356.711 kb on - strand, within EX31_RS01590at 356.782 kb on - strand, within EX31_RS01590at 356.800 kb on + strand, within EX31_RS01590at 356.800 kb on + strand, within EX31_RS01590at 356.801 kb on - strand, within EX31_RS01590at 356.913 kb on + strand, within EX31_RS01590at 356.913 kb on + strand, within EX31_RS01590at 356.913 kb on + strand, within EX31_RS01590at 356.914 kb on - strand, within EX31_RS01590at 357.344 kb on - strand, within EX31_RS01595at 357.435 kb on + strandat 357.435 kb on + strandat 357.436 kb on - strandat 357.490 kb on - strand, within EX31_RS01600at 357.511 kb on - strand, within EX31_RS01600at 357.715 kb on - strand, within EX31_RS01600at 357.849 kb on - strand, within EX31_RS01600at 357.903 kb on + strand, within EX31_RS01600at 357.904 kb on - strand, within EX31_RS01600

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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355,701 - EX31_RS01585 0.58 -0.0
355,735 + EX31_RS01585 0.60 -0.8
355,736 - EX31_RS01585 0.60 +0.8
355,743 - EX31_RS01585 0.60 +1.1
355,743 - EX31_RS01585 0.60 -0.4
355,813 - EX31_RS01585 0.63 -0.7
355,885 - EX31_RS01585 0.66 -1.6
356,127 - EX31_RS01585 0.77 +0.2
356,154 - EX31_RS01585 0.78 +0.2
356,189 + EX31_RS01585 0.79 +0.2
356,189 + EX31_RS01585 0.79 -0.2
356,190 - EX31_RS01585 0.79 +1.0
356,190 - EX31_RS01585 0.79 -0.5
356,196 + EX31_RS01585 0.80 +1.8
356,196 + EX31_RS01585 0.80 -1.2
356,197 - EX31_RS01585 0.80 +0.6
356,197 - EX31_RS01585 0.80 +1.1
356,197 - EX31_RS01585 0.80 -0.2
356,254 + EX31_RS01585 0.82 +0.0
356,323 + EX31_RS01585 0.85 -0.2
356,323 + EX31_RS01585 0.85 +0.0
356,323 + EX31_RS01585 0.85 +0.8
356,323 + EX31_RS01585 0.85 +2.8
356,323 + EX31_RS01585 0.85 +1.5
356,323 + EX31_RS01585 0.85 -0.3
356,324 - EX31_RS01585 0.85 +0.1
356,324 - EX31_RS01585 0.85 +0.5
356,324 - EX31_RS01585 0.85 +0.8
356,334 + EX31_RS01585 0.85 +0.5
356,477 + +0.1
356,600 - +1.4
356,600 - -0.5
356,711 - EX31_RS01590 0.18 +1.8
356,711 - EX31_RS01590 0.18 +1.8
356,782 - EX31_RS01590 0.41 +0.1
356,800 + EX31_RS01590 0.47 +0.8
356,800 + EX31_RS01590 0.47 +0.8
356,801 - EX31_RS01590 0.47 +0.8
356,913 + EX31_RS01590 0.83 +1.6
356,913 + EX31_RS01590 0.83 -1.2
356,913 + EX31_RS01590 0.83 +0.6
356,914 - EX31_RS01590 0.83 +1.3
357,344 - EX31_RS01595 0.87 -0.2
357,435 + -0.2
357,435 + +0.8
357,436 - -0.3
357,490 - EX31_RS01600 0.11 -0.8
357,511 - EX31_RS01600 0.14 +1.3
357,715 - EX31_RS01600 0.42 +0.8
357,849 - EX31_RS01600 0.60 +1.6
357,903 + EX31_RS01600 0.67 +2.3
357,904 - EX31_RS01600 0.67 -0.5

Or see this region's nucleotide sequence